data_4FRY # _model_server_result.job_id UGY-bnaWJrHlZEyK4ojk0Q _model_server_result.datetime_utc '2024-11-05 00:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4FRY # _exptl.entry_id 4FRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.41 _cell.angle_gamma 90 _cell.entry_id 4FRY _cell.length_a 33.35 _cell.length_b 56.63 _cell.length_c 76.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 276 n n PA O2A NAD sing 277 n n PA O5B NAD sing 278 n n PA O3 NAD sing 279 n n O2A HOA2 NAD sing 280 n n O5B C5B NAD sing 281 n n C5B C4B NAD sing 282 n n C5B H51A NAD sing 283 n n C5B H52A NAD sing 284 n n C4B O4B NAD sing 285 n n C4B C3B NAD sing 286 n n C4B H4B NAD sing 287 n n O4B C1B NAD sing 288 n n C3B O3B NAD sing 289 n n C3B C2B NAD sing 290 n n C3B H3B NAD sing 291 n n O3B HO3A NAD sing 292 n n C2B O2B NAD sing 293 n n C2B C1B NAD sing 294 n n C2B H2B NAD sing 295 n n O2B HO2A NAD sing 296 n n C1B N9A NAD sing 297 n n C1B H1B NAD sing 298 n n N9A C8A NAD sing 299 n y N9A C4A NAD sing 300 n y C8A N7A NAD doub 301 n y C8A H8A NAD sing 302 n n N7A C5A NAD sing 303 n y C5A C6A NAD sing 304 n y C5A C4A NAD doub 305 n y C6A N6A NAD sing 306 n n C6A N1A NAD doub 307 n y N6A H61A NAD sing 308 n n N6A H62A NAD sing 309 n n N1A C2A NAD sing 310 n y C2A N3A NAD doub 311 n y C2A H2A NAD sing 312 n n N3A C4A NAD sing 313 n y O3 PN NAD sing 314 n n PN O1N NAD doub 315 n n PN O2N NAD sing 316 n n PN O5D NAD sing 317 n n O5D C5D NAD sing 318 n n C5D C4D NAD sing 319 n n C5D H51N NAD sing 320 n n C5D H52N NAD sing 321 n n C4D O4D NAD sing 322 n n C4D C3D NAD sing 323 n n C4D H4D NAD sing 324 n n O4D C1D NAD sing 325 n n C3D O3D NAD sing 326 n n C3D C2D NAD sing 327 n n C3D H3D NAD sing 328 n n O3D HO3N NAD sing 329 n n C2D O2D NAD sing 330 n n C2D C1D NAD sing 331 n n C2D H2D NAD sing 332 n n O2D HO2N NAD sing 333 n n C1D N1N NAD sing 334 n n C1D H1D NAD sing 335 n n N1N C2N NAD sing 336 n y N1N C6N NAD doub 337 n y C2N C3N NAD doub 338 n y C2N H2N NAD sing 339 n n C3N C7N NAD sing 340 n n C3N C4N NAD sing 341 n y C7N O7N NAD doub 342 n n C7N N7N NAD sing 343 n n N7N H71N NAD sing 344 n n N7N H72N NAD sing 345 n n C4N C5N NAD doub 346 n y C4N H4N NAD sing 347 n n C5N C6N NAD sing 348 n y C5N H5N NAD sing 349 n n C6N H6N NAD sing 350 n n # _atom_sites.entry_id 4FRY _atom_sites.fract_transf_matrix[1][1] 0.029985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004431 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 201 600 NAD NAD . D 3 AMP A 1 202 800 AMP AMP . E 2 NAD B 1 201 600 NAD NAD . F 3 AMP B 1 202 800 AMP AMP . G 4 HOH A 1 301 7 HOH HOH . G 4 HOH A 2 302 11 HOH HOH . G 4 HOH A 3 303 16 HOH HOH . G 4 HOH A 4 304 18 HOH HOH . G 4 HOH A 5 305 30 HOH HOH . G 4 HOH A 6 306 47 HOH HOH . G 4 HOH A 7 307 68 HOH HOH . G 4 HOH A 8 308 79 HOH HOH . G 4 HOH A 9 309 87 HOH HOH . G 4 HOH A 10 310 91 HOH HOH . G 4 HOH A 11 311 92 HOH HOH . G 4 HOH A 12 312 93 HOH HOH . G 4 HOH A 13 313 94 HOH HOH . G 4 HOH A 14 314 97 HOH HOH . G 4 HOH A 15 315 98 HOH HOH . G 4 HOH A 16 316 99 HOH HOH . G 4 HOH A 17 317 100 HOH HOH . G 4 HOH A 18 318 101 HOH HOH . G 4 HOH A 19 319 106 HOH HOH . G 4 HOH A 20 320 112 HOH HOH . G 4 HOH A 21 321 115 HOH HOH . G 4 HOH A 22 322 122 HOH HOH . G 4 HOH A 23 323 124 HOH HOH . G 4 HOH A 24 324 125 HOH HOH . H 4 HOH B 1 301 19 HOH HOH . H 4 HOH B 2 302 23 HOH HOH . H 4 HOH B 3 303 38 HOH HOH . H 4 HOH B 4 304 40 HOH HOH . H 4 HOH B 5 305 45 HOH HOH . H 4 HOH B 6 306 56 HOH HOH . H 4 HOH B 7 307 58 HOH HOH . H 4 HOH B 8 308 73 HOH HOH . H 4 HOH B 9 309 80 HOH HOH . H 4 HOH B 10 310 89 HOH HOH . H 4 HOH B 11 311 95 HOH HOH . H 4 HOH B 12 312 96 HOH HOH . H 4 HOH B 13 313 102 HOH HOH . H 4 HOH B 14 314 103 HOH HOH . H 4 HOH B 15 315 104 HOH HOH . H 4 HOH B 16 316 105 HOH HOH . H 4 HOH B 17 317 107 HOH HOH . H 4 HOH B 18 318 113 HOH HOH . H 4 HOH B 19 319 116 HOH HOH . H 4 HOH B 20 320 117 HOH HOH . H 4 HOH B 21 321 118 HOH HOH . H 4 HOH B 22 322 119 HOH HOH . H 4 HOH B 23 323 120 HOH HOH . H 4 HOH B 24 324 121 HOH HOH . H 4 HOH B 25 325 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 5.764 26.983 63.063 1 21.4 ? PA NAD 201 A 1 HETATM 2 O O1A NAD . . . C 2 6.871 26.223 63.739 1 21.18 ? O1A NAD 201 A 1 HETATM 3 O O2A NAD . . . C 2 4.645 26.127 62.506 1 20.54 ? O2A NAD 201 A 1 HETATM 4 O O5B NAD . . . C 2 5.243 28.17 64.028 1 24.92 ? O5B NAD 201 A 1 HETATM 5 C C5B NAD . . . C 2 3.876 28.316 64.474 1 25.74 ? C5B NAD 201 A 1 HETATM 6 C C4B NAD . . . C 2 3.828 29.072 65.811 1 25.92 ? C4B NAD 201 A 1 HETATM 7 O O4B NAD . . . C 2 4.242 28.219 66.878 1 28.43 ? O4B NAD 201 A 1 HETATM 8 C C3B NAD . . . C 2 4.791 30.233 65.856 1 25.83 ? C3B NAD 201 A 1 HETATM 9 O O3B NAD . . . C 2 4.21 31.31 66.584 1 24.79 ? O3B NAD 201 A 1 HETATM 10 C C2B NAD . . . C 2 6.025 29.687 66.556 1 26.52 ? C2B NAD 201 A 1 HETATM 11 O O2B NAD . . . C 2 6.836 30.668 67.215 1 24.37 ? O2B NAD 201 A 1 HETATM 12 C C1B NAD . . . C 2 5.437 28.683 67.522 1 26.87 ? C1B NAD 201 A 1 HETATM 13 N N9A NAD . . . C 2 6.376 27.566 67.791 1 28.8 ? N9A NAD 201 A 1 HETATM 14 C C8A NAD . . . C 2 6.899 26.71 66.886 1 29.5 ? C8A NAD 201 A 1 HETATM 15 N N7A NAD . . . C 2 7.734 25.804 67.475 1 29.5 ? N7A NAD 201 A 1 HETATM 16 C C5A NAD . . . C 2 7.754 26.079 68.795 1 30.32 ? C5A NAD 201 A 1 HETATM 17 C C6A NAD . . . C 2 8.42 25.53 70.015 1 30.44 ? C6A NAD 201 A 1 HETATM 18 N N6A NAD . . . C 2 9.257 24.469 69.964 1 30.46 ? N6A NAD 201 A 1 HETATM 19 N N1A NAD . . . C 2 8.158 26.13 71.202 1 29.76 ? N1A NAD 201 A 1 HETATM 20 C C2A NAD . . . C 2 7.326 27.188 71.29 1 30.28 ? C2A NAD 201 A 1 HETATM 21 N N3A NAD . . . C 2 6.689 27.731 70.236 1 29 ? N3A NAD 201 A 1 HETATM 22 C C4A NAD . . . C 2 6.861 27.239 68.989 1 29.51 ? C4A NAD 201 A 1 HETATM 23 O O3 NAD . . . C 2 6.482 27.773 61.844 1 22.49 ? O3 NAD 201 A 1 HETATM 24 P PN NAD . . . C 2 5.927 28.939 60.891 1 23.55 ? PN NAD 201 A 1 HETATM 25 O O1N NAD . . . C 2 6.522 28.683 59.525 1 21.64 ? O1N NAD 201 A 1 HETATM 26 O O2N NAD . . . C 2 6.092 30.263 61.57 1 22.5 ? O2N NAD 201 A 1 HETATM 27 O O5D NAD . . . C 2 4.459 28.374 60.5 1 26.73 ? O5D NAD 201 A 1 HETATM 28 C C5D NAD . . . C 2 3.197 28.722 60.913 1 26.58 ? C5D NAD 201 A 1 HETATM 29 C C4D NAD . . . C 2 2.306 29.023 59.706 1 25.21 ? C4D NAD 201 A 1 HETATM 30 O O4D NAD . . . C 2 1.32 29.781 60.37 1 25.14 ? O4D NAD 201 A 1 HETATM 31 C C3D NAD . . . C 2 2.872 29.941 58.613 1 24.57 ? C3D NAD 201 A 1 HETATM 32 O O3D NAD . . . C 2 2.091 29.978 57.407 1 24.97 ? O3D NAD 201 A 1 HETATM 33 C C2D NAD . . . C 2 2.806 31.293 59.258 1 23.77 ? C2D NAD 201 A 1 HETATM 34 O O2D NAD . . . C 2 2.777 32.367 58.301 1 22.5 ? O2D NAD 201 A 1 HETATM 35 C C1D NAD . . . C 2 1.53 31.163 60.097 1 24.53 ? C1D NAD 201 A 1 HETATM 36 N N1N NAD . . . C 2 1.552 31.875 61.379 1 25.69 ? N1N NAD 201 A 1 HETATM 37 C C2N NAD . . . C 2 0.412 32.49 61.729 1 25.06 ? C2N NAD 201 A 1 HETATM 38 C C3N NAD . . . C 2 0.314 33.198 62.919 1 25.41 ? C3N NAD 201 A 1 HETATM 39 C C7N NAD . . . C 2 -0.953 33.912 63.308 1 25.42 ? C7N NAD 201 A 1 HETATM 40 O O7N NAD . . . C 2 -0.933 34.516 64.37 1 26.84 ? O7N NAD 201 A 1 HETATM 41 N N7N NAD . . . C 2 -2.039 33.936 62.523 1 23.91 ? N7N NAD 201 A 1 HETATM 42 C C4N NAD . . . C 2 1.433 33.276 63.752 1 26.1 ? C4N NAD 201 A 1 HETATM 43 C C5N NAD . . . C 2 2.599 32.631 63.379 1 26.08 ? C5N NAD 201 A 1 HETATM 44 C C6N NAD . . . C 2 2.639 31.922 62.184 1 25.45 ? C6N NAD 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #