data_4FRY
#
_model_server_result.job_id            a3wpW4792Q3J8OpgYj9BVA 
_model_server_result.datetime_utc      '2024-11-05 00:38:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fry 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4FRY 
#
_exptl.entry_id    4FRY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.41 
_cell.angle_gamma         90 
_cell.entry_id            4FRY 
_cell.length_a            33.35 
_cell.length_b            56.63 
_cell.length_c            76.58 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FRY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4FRY 
_atom_sites.fract_transf_matrix[1][1]    0.029985 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004431 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017658 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 201 600 NAD NAD . 
D 3 AMP A 1 202 800 AMP AMP . 
E 2 NAD B 1 201 600 NAD NAD . 
F 3 AMP B 1 202 800 AMP AMP . 
G 4 HOH A 1 301 7 HOH HOH . 
G 4 HOH A 2 302 11 HOH HOH . 
G 4 HOH A 3 303 16 HOH HOH . 
G 4 HOH A 4 304 18 HOH HOH . 
G 4 HOH A 5 305 30 HOH HOH . 
G 4 HOH A 6 306 47 HOH HOH . 
G 4 HOH A 7 307 68 HOH HOH . 
G 4 HOH A 8 308 79 HOH HOH . 
G 4 HOH A 9 309 87 HOH HOH . 
G 4 HOH A 10 310 91 HOH HOH . 
G 4 HOH A 11 311 92 HOH HOH . 
G 4 HOH A 12 312 93 HOH HOH . 
G 4 HOH A 13 313 94 HOH HOH . 
G 4 HOH A 14 314 97 HOH HOH . 
G 4 HOH A 15 315 98 HOH HOH . 
G 4 HOH A 16 316 99 HOH HOH . 
G 4 HOH A 17 317 100 HOH HOH . 
G 4 HOH A 18 318 101 HOH HOH . 
G 4 HOH A 19 319 106 HOH HOH . 
G 4 HOH A 20 320 112 HOH HOH . 
G 4 HOH A 21 321 115 HOH HOH . 
G 4 HOH A 22 322 122 HOH HOH . 
G 4 HOH A 23 323 124 HOH HOH . 
G 4 HOH A 24 324 125 HOH HOH . 
H 4 HOH B 1 301 19 HOH HOH . 
H 4 HOH B 2 302 23 HOH HOH . 
H 4 HOH B 3 303 38 HOH HOH . 
H 4 HOH B 4 304 40 HOH HOH . 
H 4 HOH B 5 305 45 HOH HOH . 
H 4 HOH B 6 306 56 HOH HOH . 
H 4 HOH B 7 307 58 HOH HOH . 
H 4 HOH B 8 308 73 HOH HOH . 
H 4 HOH B 9 309 80 HOH HOH . 
H 4 HOH B 10 310 89 HOH HOH . 
H 4 HOH B 11 311 95 HOH HOH . 
H 4 HOH B 12 312 96 HOH HOH . 
H 4 HOH B 13 313 102 HOH HOH . 
H 4 HOH B 14 314 103 HOH HOH . 
H 4 HOH B 15 315 104 HOH HOH . 
H 4 HOH B 16 316 105 HOH HOH . 
H 4 HOH B 17 317 107 HOH HOH . 
H 4 HOH B 18 318 113 HOH HOH . 
H 4 HOH B 19 319 116 HOH HOH . 
H 4 HOH B 20 320 117 HOH HOH . 
H 4 HOH B 21 321 118 HOH HOH . 
H 4 HOH B 22 322 119 HOH HOH . 
H 4 HOH B 23 323 120 HOH HOH . 
H 4 HOH B 24 324 121 HOH HOH . 
H 4 HOH B 25 325 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . D 3 13.417 25.19 59.595 1 23.42 ? P AMP 202 A 1 
HETATM 2 O O1P AMP . . . D 3 13.336 25.941 60.915 1 24.75 ? O1P AMP 202 A 1 
HETATM 3 O O2P AMP . . . D 3 12.468 24.024 59.493 1 22.68 ? O2P AMP 202 A 1 
HETATM 4 O O3P AMP . . . D 3 13.411 26.113 58.409 1 22.3 ? O3P AMP 202 A 1 
HETATM 5 O O5' AMP . . . D 3 14.868 24.495 59.656 1 23.78 ? O5' AMP 202 A 1 
HETATM 6 C C5' AMP . . . D 3 15.675 24.209 58.504 1 24.08 ? C5' AMP 202 A 1 
HETATM 7 C C4' AMP . . . D 3 16.99 23.527 58.911 1 24.15 ? C4' AMP 202 A 1 
HETATM 8 O O4' AMP . . . D 3 17.74 24.416 59.746 1 24.8 ? O4' AMP 202 A 1 
HETATM 9 C C3' AMP . . . D 3 16.793 22.278 59.746 1 25.68 ? C3' AMP 202 A 1 
HETATM 10 O O3' AMP . . . D 3 17.832 21.325 59.488 1 25.22 ? O3' AMP 202 A 1 
HETATM 11 C C2' AMP . . . D 3 16.87 22.763 61.178 1 25.84 ? C2' AMP 202 A 1 
HETATM 12 O O2' AMP . . . D 3 17.336 21.774 62.1 1 25.69 ? O2' AMP 202 A 1 
HETATM 13 C C1' AMP . . . D 3 17.835 23.928 61.074 1 25.62 ? C1' AMP 202 A 1 
HETATM 14 N N9 AMP . . . D 3 17.524 25.023 62.034 1 27.34 ? N9 AMP 202 A 1 
HETATM 15 C C8 AMP . . . D 3 16.326 25.539 62.342 1 26.38 ? C8 AMP 202 A 1 
HETATM 16 N N7 AMP . . . D 3 16.447 26.542 63.242 1 26.8 ? N7 AMP 202 A 1 
HETATM 17 C C5 AMP . . . D 3 17.743 26.669 63.528 1 26.44 ? C5 AMP 202 A 1 
HETATM 18 C C6 AMP . . . D 3 18.553 27.535 64.407 1 27.22 ? C6 AMP 202 A 1 
HETATM 19 N N6 AMP . . . D 3 17.959 28.479 65.188 1 27.39 ? N6 AMP 202 A 1 
HETATM 20 N N1 AMP . . . D 3 19.894 27.338 64.407 1 27.02 ? N1 AMP 202 A 1 
HETATM 21 C C2 AMP . . . D 3 20.493 26.405 63.626 1 27.75 ? C2 AMP 202 A 1 
HETATM 22 N N3 AMP . . . D 3 19.811 25.59 62.793 1 26.99 ? N3 AMP 202 A 1 
HETATM 23 C C4 AMP . . . D 3 18.457 25.679 62.712 1 27.45 ? C4 AMP 202 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           23 
#