data_4FSY # _model_server_result.job_id nnZ-wVe32CGmp1HXVQR7tA _model_server_result.datetime_utc '2024-10-19 16:35:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4FSY # _exptl.entry_id 4FSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(11-oxo-10,11-dihydro-5H-dibenzo[b,e][1,4]diazepin-3-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.28 _cell.angle_gamma 90 _cell.entry_id 4FSY _cell.length_a 45.276 _cell.length_b 65.903 _cell.length_c 57.759 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 55 A ILE 56 1_555 A N CSO 56 A CSO 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSO 56 A CSO 57 1_555 A N ILE 57 A ILE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? # _chem_comp.formula 'C20 H15 N3 O2' _chem_comp.formula_weight 329.352 _chem_comp.id HK7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(11-oxo-10,11-dihydro-5H-dibenzo[b,e][1,4]diazepin-3-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4FSY _atom_sites.fract_transf_matrix[1][1] 0.022087 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001653 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HK7 A 1 301 300 HK7 HK7 . C 3 SO4 A 1 302 301 SO4 SO4 . D 4 GOL A 1 303 302 GOL GOL . E 5 IPA A 1 304 1 IPA IPA . F 6 HOH A 1 401 1 HOH HOH . F 6 HOH A 2 402 2 HOH HOH . F 6 HOH A 3 403 3 HOH HOH . F 6 HOH A 4 404 4 HOH HOH . F 6 HOH A 5 405 5 HOH HOH . F 6 HOH A 6 406 6 HOH HOH . F 6 HOH A 7 407 7 HOH HOH . F 6 HOH A 8 408 8 HOH HOH . F 6 HOH A 9 409 9 HOH HOH . F 6 HOH A 10 410 10 HOH HOH . F 6 HOH A 11 411 11 HOH HOH . F 6 HOH A 12 412 12 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 14 HOH HOH . F 6 HOH A 15 415 15 HOH HOH . F 6 HOH A 16 416 16 HOH HOH . F 6 HOH A 17 417 17 HOH HOH . F 6 HOH A 18 418 18 HOH HOH . F 6 HOH A 19 419 19 HOH HOH . F 6 HOH A 20 420 20 HOH HOH . F 6 HOH A 21 421 21 HOH HOH . F 6 HOH A 22 422 22 HOH HOH . F 6 HOH A 23 423 23 HOH HOH . F 6 HOH A 24 424 24 HOH HOH . F 6 HOH A 25 425 25 HOH HOH . F 6 HOH A 26 426 26 HOH HOH . F 6 HOH A 27 427 27 HOH HOH . F 6 HOH A 28 428 28 HOH HOH . F 6 HOH A 29 429 29 HOH HOH . F 6 HOH A 30 430 30 HOH HOH . F 6 HOH A 31 431 31 HOH HOH . F 6 HOH A 32 432 32 HOH HOH . F 6 HOH A 33 433 33 HOH HOH . F 6 HOH A 34 434 34 HOH HOH . F 6 HOH A 35 435 35 HOH HOH . F 6 HOH A 36 436 36 HOH HOH . F 6 HOH A 37 437 37 HOH HOH . F 6 HOH A 38 438 38 HOH HOH . F 6 HOH A 39 439 39 HOH HOH . F 6 HOH A 40 440 40 HOH HOH . F 6 HOH A 41 441 41 HOH HOH . F 6 HOH A 42 442 42 HOH HOH . F 6 HOH A 43 443 43 HOH HOH . F 6 HOH A 44 444 44 HOH HOH . F 6 HOH A 45 445 45 HOH HOH . F 6 HOH A 46 446 46 HOH HOH . F 6 HOH A 47 447 47 HOH HOH . F 6 HOH A 48 448 48 HOH HOH . F 6 HOH A 49 449 49 HOH HOH . F 6 HOH A 50 450 50 HOH HOH . F 6 HOH A 51 451 51 HOH HOH . F 6 HOH A 52 452 52 HOH HOH . F 6 HOH A 53 453 53 HOH HOH . F 6 HOH A 54 454 54 HOH HOH . F 6 HOH A 55 455 55 HOH HOH . F 6 HOH A 56 456 56 HOH HOH . F 6 HOH A 57 457 57 HOH HOH . F 6 HOH A 58 458 58 HOH HOH . F 6 HOH A 59 459 59 HOH HOH . F 6 HOH A 60 460 60 HOH HOH . F 6 HOH A 61 461 61 HOH HOH . F 6 HOH A 62 462 62 HOH HOH . F 6 HOH A 63 463 63 HOH HOH . F 6 HOH A 64 464 64 HOH HOH . F 6 HOH A 65 465 65 HOH HOH . F 6 HOH A 66 466 66 HOH HOH . F 6 HOH A 67 467 67 HOH HOH . F 6 HOH A 68 468 68 HOH HOH . F 6 HOH A 69 469 69 HOH HOH . F 6 HOH A 70 470 70 HOH HOH . F 6 HOH A 71 471 71 HOH HOH . F 6 HOH A 72 472 72 HOH HOH . F 6 HOH A 73 473 73 HOH HOH . F 6 HOH A 74 474 74 HOH HOH . F 6 HOH A 75 475 75 HOH HOH . F 6 HOH A 76 476 76 HOH HOH . F 6 HOH A 77 477 77 HOH HOH . F 6 HOH A 78 478 78 HOH HOH . F 6 HOH A 79 479 79 HOH HOH . F 6 HOH A 80 480 80 HOH HOH . F 6 HOH A 81 481 81 HOH HOH . F 6 HOH A 82 482 82 HOH HOH . F 6 HOH A 83 483 83 HOH HOH . F 6 HOH A 84 484 84 HOH HOH . F 6 HOH A 85 485 85 HOH HOH . F 6 HOH A 86 486 86 HOH HOH . F 6 HOH A 87 487 87 HOH HOH . F 6 HOH A 88 488 88 HOH HOH . F 6 HOH A 89 489 89 HOH HOH . F 6 HOH A 90 490 90 HOH HOH . F 6 HOH A 91 491 91 HOH HOH . F 6 HOH A 92 492 92 HOH HOH . F 6 HOH A 93 493 93 HOH HOH . F 6 HOH A 94 494 94 HOH HOH . F 6 HOH A 95 495 95 HOH HOH . F 6 HOH A 96 496 96 HOH HOH . F 6 HOH A 97 497 97 HOH HOH . F 6 HOH A 98 498 98 HOH HOH . F 6 HOH A 99 499 99 HOH HOH . F 6 HOH A 100 500 100 HOH HOH . F 6 HOH A 101 501 101 HOH HOH . F 6 HOH A 102 502 102 HOH HOH . F 6 HOH A 103 503 103 HOH HOH . F 6 HOH A 104 504 104 HOH HOH . F 6 HOH A 105 505 105 HOH HOH . F 6 HOH A 106 506 106 HOH HOH . F 6 HOH A 107 507 107 HOH HOH . F 6 HOH A 108 508 108 HOH HOH . F 6 HOH A 109 509 109 HOH HOH . F 6 HOH A 110 510 110 HOH HOH . F 6 HOH A 111 511 111 HOH HOH . F 6 HOH A 112 512 112 HOH HOH . F 6 HOH A 113 513 113 HOH HOH . F 6 HOH A 114 514 114 HOH HOH . F 6 HOH A 115 515 115 HOH HOH . F 6 HOH A 116 516 116 HOH HOH . F 6 HOH A 117 517 117 HOH HOH . F 6 HOH A 118 518 118 HOH HOH . F 6 HOH A 119 519 119 HOH HOH . F 6 HOH A 120 520 120 HOH HOH . F 6 HOH A 121 521 121 HOH HOH . F 6 HOH A 122 522 122 HOH HOH . F 6 HOH A 123 523 123 HOH HOH . F 6 HOH A 124 524 124 HOH HOH . F 6 HOH A 125 525 125 HOH HOH . F 6 HOH A 126 526 126 HOH HOH . F 6 HOH A 127 527 127 HOH HOH . F 6 HOH A 128 528 128 HOH HOH . F 6 HOH A 129 529 129 HOH HOH . F 6 HOH A 130 530 130 HOH HOH . F 6 HOH A 131 531 131 HOH HOH . F 6 HOH A 132 532 132 HOH HOH . F 6 HOH A 133 533 133 HOH HOH . F 6 HOH A 134 534 134 HOH HOH . F 6 HOH A 135 535 135 HOH HOH . F 6 HOH A 136 536 136 HOH HOH . F 6 HOH A 137 537 137 HOH HOH . F 6 HOH A 138 538 138 HOH HOH . F 6 HOH A 139 539 139 HOH HOH . F 6 HOH A 140 540 140 HOH HOH . F 6 HOH A 141 541 141 HOH HOH . F 6 HOH A 142 542 142 HOH HOH . F 6 HOH A 143 543 143 HOH HOH . F 6 HOH A 144 544 144 HOH HOH . F 6 HOH A 145 545 145 HOH HOH . F 6 HOH A 146 546 146 HOH HOH . F 6 HOH A 147 547 147 HOH HOH . F 6 HOH A 148 548 148 HOH HOH . F 6 HOH A 149 549 149 HOH HOH . F 6 HOH A 150 550 150 HOH HOH . F 6 HOH A 151 551 151 HOH HOH . F 6 HOH A 152 552 152 HOH HOH . F 6 HOH A 153 553 153 HOH HOH . F 6 HOH A 154 554 154 HOH HOH . F 6 HOH A 155 555 155 HOH HOH . F 6 HOH A 156 556 156 HOH HOH . F 6 HOH A 157 557 157 HOH HOH . F 6 HOH A 158 558 158 HOH HOH . F 6 HOH A 159 559 159 HOH HOH . F 6 HOH A 160 560 160 HOH HOH . F 6 HOH A 161 561 161 HOH HOH . F 6 HOH A 162 562 162 HOH HOH . F 6 HOH A 163 563 163 HOH HOH . F 6 HOH A 164 564 164 HOH HOH . F 6 HOH A 165 565 165 HOH HOH . F 6 HOH A 166 566 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 HK7 . . . B 2 12.461 -5.34 13.354 1 32.5 ? O2 HK7 301 A 1 HETATM 2 C C16 HK7 . . . B 2 13.549 -5.886 13.589 1 30.27 ? C16 HK7 301 A 1 HETATM 3 N N3 HK7 . . . B 2 14.477 -5.264 14.384 1 27.18 ? N3 HK7 301 A 1 HETATM 4 C C15 HK7 . . . B 2 13.868 -7.256 13.069 1 30.55 ? C15 HK7 301 A 1 HETATM 5 C C14 HK7 . . . B 2 13.135 -8.34 13.61 1 28.92 ? C14 HK7 301 A 1 HETATM 6 C C13 HK7 . . . B 2 13.508 -9.657 13.309 1 28.62 ? C13 HK7 301 A 1 HETATM 7 C C12 HK7 . . . B 2 14.617 -9.904 12.473 1 29.36 ? C12 HK7 301 A 1 HETATM 8 C C11 HK7 . . . B 2 15.331 -8.836 11.898 1 29.6 ? C11 HK7 301 A 1 HETATM 9 C C10 HK7 . . . B 2 14.944 -7.503 12.172 1 30.86 ? C10 HK7 301 A 1 HETATM 10 C C8 HK7 . . . B 2 15.616 -6.413 11.422 1 29.9 ? C8 HK7 301 A 1 HETATM 11 C C7 HK7 . . . B 2 14.845 -5.536 10.655 1 30.41 ? C7 HK7 301 A 1 HETATM 12 C C6 HK7 . . . B 2 15.44 -4.477 9.999 1 30.17 ? C6 HK7 301 A 1 HETATM 13 C C5 HK7 . . . B 2 16.826 -4.228 10.1 1 30.16 ? C5 HK7 301 A 1 HETATM 14 C C1 HK7 . . . B 2 17.329 -2.97 9.479 1 29.94 ? C1 HK7 301 A 1 HETATM 15 O O1 HK7 . . . B 2 16.545 -2.009 9.224 1 29.26 ? O1 HK7 301 A 1 HETATM 16 C C9 HK7 . . . B 2 16.983 -6.235 11.509 1 30 ? C9 HK7 301 A 1 HETATM 17 C C4 HK7 . . . B 2 17.608 -5.128 10.855 1 29.28 ? C4 HK7 301 A 1 HETATM 18 N N2 HK7 . . . B 2 18.988 -4.969 11.071 1 27.93 ? N2 HK7 301 A 1 HETATM 19 C C3 HK7 . . . B 2 19.932 -4.692 10.05 1 27.68 ? C3 HK7 301 A 1 HETATM 20 C C17 HK7 . . . B 2 21.121 -5.478 10.005 1 27.84 ? C17 HK7 301 A 1 HETATM 21 C C18 HK7 . . . B 2 22.137 -5.188 9.088 1 27.75 ? C18 HK7 301 A 1 HETATM 22 C C19 HK7 . . . B 2 21.986 -4.12 8.194 1 27.19 ? C19 HK7 301 A 1 HETATM 23 C C20 HK7 . . . B 2 20.823 -3.351 8.214 1 27.43 ? C20 HK7 301 A 1 HETATM 24 C C2 HK7 . . . B 2 19.776 -3.623 9.146 1 27.39 ? C2 HK7 301 A 1 HETATM 25 N N1 HK7 . . . B 2 18.665 -2.754 9.114 1 27.46 ? N1 HK7 301 A 1 HETATM 26 H H9 HK7 . . . B 2 12.285 -8.142 14.261 0 28.95 ? H9 HK7 301 A 1 HETATM 27 H H8 HK7 . . . B 2 12.943 -10.49 13.725 0 28.56 ? H8 HK7 301 A 1 HETATM 28 H H7 HK7 . . . B 2 14.925 -10.929 12.27 0 29.29 ? H7 HK7 301 A 1 HETATM 29 H H6 HK7 . . . B 2 16.179 -9.025 11.241 0 29.53 ? H6 HK7 301 A 1 HETATM 30 H H4 HK7 . . . B 2 13.767 -5.677 10.596 0 30.48 ? H4 HK7 301 A 1 HETATM 31 H H3 HK7 . . . B 2 14.813 -3.843 9.374 0 30.28 ? H3 HK7 301 A 1 HETATM 32 H H5 HK7 . . . B 2 17.569 -6.954 12.08 0 30.11 ? H5 HK7 301 A 1 HETATM 33 H H2 HK7 . . . B 2 19.369 -5.481 11.86 0 27.99 ? H2 HK7 301 A 1 HETATM 34 H H12 HK7 . . . B 2 21.247 -6.317 10.688 0 27.79 ? H12 HK7 301 A 1 HETATM 35 H H13 HK7 . . . B 2 23.042 -5.793 9.071 0 27.76 ? H13 HK7 301 A 1 HETATM 36 H H14 HK7 . . . B 2 22.777 -3.884 7.483 0 27.15 ? H14 HK7 301 A 1 HETATM 37 H H15 HK7 . . . B 2 20.724 -2.534 7.501 0 27.36 ? H15 HK7 301 A 1 HETATM 38 H H1 HK7 . . . B 2 18.872 -1.821 8.775 0 27.43 ? H1 HK7 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #