data_4FT2 # _model_server_result.job_id 5Iq1_RioOpIqPOfXj0SmiA _model_server_result.datetime_utc '2025-01-18 06:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ft2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1000}' # _entry.id 4FT2 # _exptl.entry_id 4FT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.15 _cell.angle_beta 95.72 _cell.angle_gamma 110.7 _cell.entry_id 4FT2 _cell.length_a 64.861 _cell.length_b 88.858 _cell.length_c 113.501 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ARG 8 P ARG 8 1_555 C N MLY 9 P MLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 C C MLY 9 P MLY 9 1_555 C N SER 10 P SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 304 n n N HN1 SAH sing 305 n n N HN2 SAH sing 306 n n CA CB SAH sing 307 n n CA C SAH sing 308 n n CA HA SAH sing 309 n n CB CG SAH sing 310 n n CB HB1 SAH sing 311 n n CB HB2 SAH sing 312 n n CG SD SAH sing 313 n n CG HG1 SAH sing 314 n n CG HG2 SAH sing 315 n n SD C5' SAH sing 316 n n C O SAH doub 317 n n C OXT SAH sing 318 n n OXT HXT SAH sing 319 n n C5' C4' SAH sing 320 n n C5' "H5'1" SAH sing 321 n n C5' "H5'2" SAH sing 322 n n C4' O4' SAH sing 323 n n C4' C3' SAH sing 324 n n C4' H4' SAH sing 325 n n O4' C1' SAH sing 326 n n C3' O3' SAH sing 327 n n C3' C2' SAH sing 328 n n C3' H3' SAH sing 329 n n O3' HO3' SAH sing 330 n n C2' O2' SAH sing 331 n n C2' C1' SAH sing 332 n n C2' H2' SAH sing 333 n n O2' HO2' SAH sing 334 n n C1' N9 SAH sing 335 n n C1' H1' SAH sing 336 n n N9 C8 SAH sing 337 n y N9 C4 SAH sing 338 n y C8 N7 SAH doub 339 n y C8 H8 SAH sing 340 n n N7 C5 SAH sing 341 n y C5 C6 SAH sing 342 n y C5 C4 SAH doub 343 n y C6 N6 SAH sing 344 n n C6 N1 SAH doub 345 n y N6 HN61 SAH sing 346 n n N6 HN62 SAH sing 347 n n N1 C2 SAH sing 348 n y C2 N3 SAH doub 349 n y C2 H2 SAH sing 350 n n N3 C4 SAH sing 351 n y # _atom_sites.entry_id 4FT2 _atom_sites.fract_transf_matrix[1][1] 0.015418 _atom_sites.fract_transf_matrix[1][2] 0.005826 _atom_sites.fract_transf_matrix[1][3] 0.002119 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012031 _atom_sites.fract_transf_matrix[2][3] 0.001171 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SAH A 1 1000 1000 SAH SAH . E 3 SAH B 1 1000 1000 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 3 -30.207 47.417 -47.711 1 58.87 ? N SAH 1000 A 1 HETATM 2 C CA SAH . . . D 3 -29.365 47.674 -46.533 1 55.49 ? CA SAH 1000 A 1 HETATM 3 C CB SAH . . . D 3 -29.891 46.923 -45.308 1 26.31 ? CB SAH 1000 A 1 HETATM 4 C CG SAH . . . D 3 -30.467 47.923 -44.304 1 24.9 ? CG SAH 1000 A 1 HETATM 5 S SD SAH . . . D 3 -31.971 47.306 -43.463 1 71.17 ? SD SAH 1000 A 1 HETATM 6 C C SAH . . . D 3 -27.929 47.234 -46.826 1 65.64 ? C SAH 1000 A 1 HETATM 7 O O SAH . . . D 3 -27.024 48.067 -46.607 1 72.02 ? O SAH 1000 A 1 HETATM 8 O OXT SAH . . . D 3 -27.757 46.06 -47.268 1 56.39 ? OXT SAH 1000 A 1 HETATM 9 C C5' SAH . . . D 3 -31.524 47.647 -41.722 1 88.21 ? C5' SAH 1000 A 1 HETATM 10 C C4' SAH . . . D 3 -31.527 49.14 -41.385 1 92.24 ? C4' SAH 1000 A 1 HETATM 11 O O4' SAH . . . D 3 -32.878 49.588 -41.208 1 99.23 ? O4' SAH 1000 A 1 HETATM 12 C C3' SAH . . . D 3 -30.886 49.354 -40.023 1 88.1 ? C3' SAH 1000 A 1 HETATM 13 O O3' SAH . . . D 3 -29.531 49.794 -40.195 1 89.74 ? O3' SAH 1000 A 1 HETATM 14 C C2' SAH . . . D 3 -31.707 50.471 -39.399 1 80.42 ? C2' SAH 1000 A 1 HETATM 15 O O2' SAH . . . D 3 -30.868 51.613 -39.172 1 84.95 ? O2' SAH 1000 A 1 HETATM 16 C C1' SAH . . . D 3 -32.743 50.805 -40.46 1 71.12 ? C1' SAH 1000 A 1 HETATM 17 N N9 SAH . . . D 3 -34.043 51.151 -39.842 1 46.25 ? N9 SAH 1000 A 1 HETATM 18 C C8 SAH . . . D 3 -34.771 50.357 -39.064 1 46.72 ? C8 SAH 1000 A 1 HETATM 19 N N7 SAH . . . D 3 -35.864 51.026 -38.708 1 33.4 ? N7 SAH 1000 A 1 HETATM 20 C C5 SAH . . . D 3 -35.812 52.233 -39.266 1 28.88 ? C5 SAH 1000 A 1 HETATM 21 C C6 SAH . . . D 3 -36.656 53.263 -39.216 1 34.05 ? C6 SAH 1000 A 1 HETATM 22 N N6 SAH . . . D 3 -37.755 53.088 -38.489 1 41.6 ? N6 SAH 1000 A 1 HETATM 23 N N1 SAH . . . D 3 -36.411 54.41 -39.862 1 25.86 ? N1 SAH 1000 A 1 HETATM 24 C C2 SAH . . . D 3 -35.237 54.524 -40.607 1 18.57 ? C2 SAH 1000 A 1 HETATM 25 N N3 SAH . . . D 3 -34.37 53.428 -40.642 1 15.98 ? N3 SAH 1000 A 1 HETATM 26 C C4 SAH . . . D 3 -34.682 52.311 -39.969 1 23.3 ? C4 SAH 1000 A 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 82 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 1289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #