data_4FT3 # _model_server_result.job_id qEuuBA_QChW27IjvDsd9kg _model_server_result.datetime_utc '2025-01-10 19:49:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ft3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4FT3 # _exptl.entry_id 4FT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.72 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-chloro-2,4-dimethoxyphenyl)-3-pyrazin-2-ylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.03 _cell.angle_gamma 90 _cell.entry_id 4FT3 _cell.length_a 44.987 _cell.length_b 65.753 _cell.length_c 57.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 166 A MET 167 1_555 A N CSO 167 A CSO 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSO 167 A CSO 168 1_555 A N GLY 168 A GLY 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C SER 213 A SER 214 1_555 A N CSO 214 A CSO 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale4 A C CSO 214 A CSO 215 1_555 A N GLN 215 A GLN 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? # _chem_comp.formula 'C13 H13 Cl N4 O3' _chem_comp.formula_weight 308.72 _chem_comp.id H1K _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-chloro-2,4-dimethoxyphenyl)-3-pyrazin-2-ylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C1 H1K sing 156 n n C2 C1 H1K doub 157 n y C2 C3 H1K sing 158 n y C1 C12 H1K sing 159 n y O1 C4 H1K doub 160 n n C4 N2 H1K sing 161 n n C4 N1 H1K sing 162 n n N2 C5 H1K sing 163 n n N1 C3 H1K sing 164 n n O3 C12 H1K sing 165 n n O3 C13 H1K sing 166 n n C3 C9 H1K doub 167 n y C12 C11 H1K doub 168 n y C9 C11 H1K sing 169 n y C9 O2 H1K sing 170 n n C5 N3 H1K doub 171 n y C5 C8 H1K sing 172 n y N3 C6 H1K sing 173 n y O2 C10 H1K sing 174 n n C8 N4 H1K doub 175 n y C6 C7 H1K doub 176 n y N4 C7 H1K sing 177 n y N2 H3 H1K sing 178 n n C8 H6 H1K sing 179 n n C7 H5 H1K sing 180 n n C6 H4 H1K sing 181 n n N1 H2 H1K sing 182 n n C2 H1 H1K sing 183 n n C10 H9 H1K sing 184 n n C10 H7 H1K sing 185 n n C10 H8 H1K sing 186 n n C11 H10 H1K sing 187 n n C13 H12 H1K sing 188 n n C13 H11 H1K sing 189 n n C13 H13 H1K sing 190 n n # _atom_sites.entry_id 4FT3 _atom_sites.fract_transf_matrix[1][1] 0.022229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001566 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H1K A 1 301 300 H1K H1K . C 3 SO4 A 1 302 301 SO4 SO4 . D 4 GOL A 1 303 302 GOL GOL . E 5 IPA A 1 304 1 IPA IPA . F 5 IPA A 1 305 2 IPA IPA . G 5 IPA A 1 306 3 IPA IPA . H 5 IPA A 1 307 4 IPA IPA . I 6 HOH A 1 401 1 HOH HOH . I 6 HOH A 2 402 2 HOH HOH . I 6 HOH A 3 403 3 HOH HOH . I 6 HOH A 4 404 4 HOH HOH . I 6 HOH A 5 405 5 HOH HOH . I 6 HOH A 6 406 6 HOH HOH . I 6 HOH A 7 407 7 HOH HOH . I 6 HOH A 8 408 8 HOH HOH . I 6 HOH A 9 409 9 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 11 HOH HOH . I 6 HOH A 12 412 12 HOH HOH . I 6 HOH A 13 413 13 HOH HOH . I 6 HOH A 14 414 14 HOH HOH . I 6 HOH A 15 415 15 HOH HOH . I 6 HOH A 16 416 16 HOH HOH . I 6 HOH A 17 417 17 HOH HOH . I 6 HOH A 18 418 18 HOH HOH . I 6 HOH A 19 419 19 HOH HOH . I 6 HOH A 20 420 20 HOH HOH . I 6 HOH A 21 421 21 HOH HOH . I 6 HOH A 22 422 22 HOH HOH . I 6 HOH A 23 423 23 HOH HOH . I 6 HOH A 24 424 24 HOH HOH . I 6 HOH A 25 425 25 HOH HOH . I 6 HOH A 26 426 26 HOH HOH . I 6 HOH A 27 427 27 HOH HOH . I 6 HOH A 28 428 28 HOH HOH . I 6 HOH A 29 429 29 HOH HOH . I 6 HOH A 30 430 30 HOH HOH . I 6 HOH A 31 431 31 HOH HOH . I 6 HOH A 32 432 32 HOH HOH . I 6 HOH A 33 433 33 HOH HOH . I 6 HOH A 34 434 34 HOH HOH . I 6 HOH A 35 435 35 HOH HOH . I 6 HOH A 36 436 36 HOH HOH . I 6 HOH A 37 437 37 HOH HOH . I 6 HOH A 38 438 38 HOH HOH . I 6 HOH A 39 439 39 HOH HOH . I 6 HOH A 40 440 40 HOH HOH . I 6 HOH A 41 441 41 HOH HOH . I 6 HOH A 42 442 42 HOH HOH . I 6 HOH A 43 443 43 HOH HOH . I 6 HOH A 44 444 44 HOH HOH . I 6 HOH A 45 445 45 HOH HOH . I 6 HOH A 46 446 46 HOH HOH . I 6 HOH A 47 447 47 HOH HOH . I 6 HOH A 48 448 48 HOH HOH . I 6 HOH A 49 449 49 HOH HOH . I 6 HOH A 50 450 50 HOH HOH . I 6 HOH A 51 451 51 HOH HOH . I 6 HOH A 52 452 52 HOH HOH . I 6 HOH A 53 453 53 HOH HOH . I 6 HOH A 54 454 54 HOH HOH . I 6 HOH A 55 455 55 HOH HOH . I 6 HOH A 56 456 56 HOH HOH . I 6 HOH A 57 457 57 HOH HOH . I 6 HOH A 58 458 58 HOH HOH . I 6 HOH A 59 459 59 HOH HOH . I 6 HOH A 60 460 60 HOH HOH . I 6 HOH A 61 461 61 HOH HOH . I 6 HOH A 62 462 62 HOH HOH . I 6 HOH A 63 463 63 HOH HOH . I 6 HOH A 64 464 64 HOH HOH . I 6 HOH A 65 465 65 HOH HOH . I 6 HOH A 66 466 66 HOH HOH . I 6 HOH A 67 467 67 HOH HOH . I 6 HOH A 68 468 68 HOH HOH . I 6 HOH A 69 469 69 HOH HOH . I 6 HOH A 70 470 70 HOH HOH . I 6 HOH A 71 471 71 HOH HOH . I 6 HOH A 72 472 72 HOH HOH . I 6 HOH A 73 473 73 HOH HOH . I 6 HOH A 74 474 74 HOH HOH . I 6 HOH A 75 475 75 HOH HOH . I 6 HOH A 76 476 76 HOH HOH . I 6 HOH A 77 477 77 HOH HOH . I 6 HOH A 78 478 78 HOH HOH . I 6 HOH A 79 479 79 HOH HOH . I 6 HOH A 80 480 80 HOH HOH . I 6 HOH A 81 481 81 HOH HOH . I 6 HOH A 82 482 82 HOH HOH . I 6 HOH A 83 483 83 HOH HOH . I 6 HOH A 84 484 84 HOH HOH . I 6 HOH A 85 485 85 HOH HOH . I 6 HOH A 86 486 86 HOH HOH . I 6 HOH A 87 487 87 HOH HOH . I 6 HOH A 88 488 88 HOH HOH . I 6 HOH A 89 489 89 HOH HOH . I 6 HOH A 90 490 90 HOH HOH . I 6 HOH A 91 491 91 HOH HOH . I 6 HOH A 92 492 92 HOH HOH . I 6 HOH A 93 493 93 HOH HOH . I 6 HOH A 94 494 94 HOH HOH . I 6 HOH A 95 495 95 HOH HOH . I 6 HOH A 96 496 96 HOH HOH . I 6 HOH A 97 497 97 HOH HOH . I 6 HOH A 98 498 98 HOH HOH . I 6 HOH A 99 499 99 HOH HOH . I 6 HOH A 100 500 100 HOH HOH . I 6 HOH A 101 501 101 HOH HOH . I 6 HOH A 102 502 102 HOH HOH . I 6 HOH A 103 503 103 HOH HOH . I 6 HOH A 104 504 104 HOH HOH . I 6 HOH A 105 505 105 HOH HOH . I 6 HOH A 106 506 106 HOH HOH . I 6 HOH A 107 507 107 HOH HOH . I 6 HOH A 108 508 108 HOH HOH . I 6 HOH A 109 509 109 HOH HOH . I 6 HOH A 110 510 110 HOH HOH . I 6 HOH A 111 511 111 HOH HOH . I 6 HOH A 112 512 112 HOH HOH . I 6 HOH A 113 513 113 HOH HOH . I 6 HOH A 114 514 114 HOH HOH . I 6 HOH A 115 515 115 HOH HOH . I 6 HOH A 116 516 116 HOH HOH . I 6 HOH A 117 517 117 HOH HOH . I 6 HOH A 118 518 118 HOH HOH . I 6 HOH A 119 519 119 HOH HOH . I 6 HOH A 120 520 120 HOH HOH . I 6 HOH A 121 521 121 HOH HOH . I 6 HOH A 122 522 122 HOH HOH . I 6 HOH A 123 523 123 HOH HOH . I 6 HOH A 124 524 124 HOH HOH . I 6 HOH A 125 525 125 HOH HOH . I 6 HOH A 126 526 126 HOH HOH . I 6 HOH A 127 527 127 HOH HOH . I 6 HOH A 128 528 128 HOH HOH . I 6 HOH A 129 529 129 HOH HOH . I 6 HOH A 130 530 130 HOH HOH . I 6 HOH A 131 531 131 HOH HOH . I 6 HOH A 132 532 132 HOH HOH . I 6 HOH A 133 533 133 HOH HOH . I 6 HOH A 134 534 134 HOH HOH . I 6 HOH A 135 535 135 HOH HOH . I 6 HOH A 136 536 136 HOH HOH . I 6 HOH A 137 537 137 HOH HOH . I 6 HOH A 138 538 138 HOH HOH . I 6 HOH A 139 539 139 HOH HOH . I 6 HOH A 140 540 140 HOH HOH . I 6 HOH A 141 541 141 HOH HOH . I 6 HOH A 142 542 142 HOH HOH . I 6 HOH A 143 543 143 HOH HOH . I 6 HOH A 144 544 144 HOH HOH . I 6 HOH A 145 545 145 HOH HOH . I 6 HOH A 146 546 146 HOH HOH . I 6 HOH A 147 547 147 HOH HOH . I 6 HOH A 148 548 148 HOH HOH . I 6 HOH A 149 549 149 HOH HOH . I 6 HOH A 150 550 150 HOH HOH . I 6 HOH A 151 551 151 HOH HOH . I 6 HOH A 152 552 152 HOH HOH . I 6 HOH A 153 553 153 HOH HOH . I 6 HOH A 154 554 154 HOH HOH . I 6 HOH A 155 555 155 HOH HOH . I 6 HOH A 156 556 156 HOH HOH . I 6 HOH A 157 557 157 HOH HOH . I 6 HOH A 158 558 158 HOH HOH . I 6 HOH A 159 559 159 HOH HOH . I 6 HOH A 160 560 160 HOH HOH . I 6 HOH A 161 561 161 HOH HOH . I 6 HOH A 162 562 162 HOH HOH . I 6 HOH A 163 563 163 HOH HOH . I 6 HOH A 164 564 164 HOH HOH . I 6 HOH A 165 565 165 HOH HOH . I 6 HOH A 166 566 166 HOH HOH . I 6 HOH A 167 567 167 HOH HOH . I 6 HOH A 168 568 168 HOH HOH . I 6 HOH A 169 569 169 HOH HOH . I 6 HOH A 170 570 170 HOH HOH . I 6 HOH A 171 571 171 HOH HOH . I 6 HOH A 172 572 172 HOH HOH . I 6 HOH A 173 573 173 HOH HOH . I 6 HOH A 174 574 174 HOH HOH . I 6 HOH A 175 575 175 HOH HOH . I 6 HOH A 176 576 176 HOH HOH . I 6 HOH A 177 577 177 HOH HOH . I 6 HOH A 178 578 178 HOH HOH . I 6 HOH A 179 579 179 HOH HOH . I 6 HOH A 180 580 180 HOH HOH . I 6 HOH A 181 581 181 HOH HOH . I 6 HOH A 182 582 182 HOH HOH . I 6 HOH A 183 583 183 HOH HOH . I 6 HOH A 184 584 184 HOH HOH . I 6 HOH A 185 585 185 HOH HOH . I 6 HOH A 186 586 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 H1K . . . B 2 16.8 -1.609 8.879 1 34.07 ? O1 H1K 301 A 1 HETATM 2 C C4 H1K . . . B 2 16.213 -2.591 9.188 1 31.78 ? C4 H1K 301 A 1 HETATM 3 N N2 H1K . . . B 2 14.779 -2.605 9.279 1 31.14 ? N2 H1K 301 A 1 HETATM 4 C C5 H1K . . . B 2 14.004 -3.121 10.371 1 27.67 ? C5 H1K 301 A 1 HETATM 5 C C8 H1K . . . B 2 14.191 -4.384 11.057 1 26.25 ? C8 H1K 301 A 1 HETATM 6 N N4 H1K . . . B 2 13.308 -4.786 12.017 1 26.17 ? N4 H1K 301 A 1 HETATM 7 C C7 H1K . . . B 2 12.248 -3.994 12.331 1 26.32 ? C7 H1K 301 A 1 HETATM 8 C C6 H1K . . . B 2 12.102 -2.784 11.673 1 25.43 ? C6 H1K 301 A 1 HETATM 9 N N3 H1K . . . B 2 12.959 -2.355 10.743 1 25.72 ? N3 H1K 301 A 1 HETATM 10 N N1 H1K . . . B 2 16.828 -3.811 9.349 1 31.29 ? N1 H1K 301 A 1 HETATM 11 C C3 H1K . . . B 2 18.21 -4.076 9.384 1 31.66 ? C3 H1K 301 A 1 HETATM 12 C C2 H1K . . . B 2 19.182 -3.412 8.651 1 30.87 ? C2 H1K 301 A 1 HETATM 13 C C9 H1K . . . B 2 18.536 -5.189 10.185 1 32.36 ? C9 H1K 301 A 1 HETATM 14 O O2 H1K . . . B 2 17.454 -5.726 10.944 1 35.46 ? O2 H1K 301 A 1 HETATM 15 C C10 H1K . . . B 2 17.563 -6.987 11.637 1 36.83 ? C10 H1K 301 A 1 HETATM 16 C C11 H1K . . . B 2 19.827 -5.682 10.229 1 33.72 ? C11 H1K 301 A 1 HETATM 17 C C12 H1K . . . B 2 20.832 -5.028 9.444 1 33.23 ? C12 H1K 301 A 1 HETATM 18 C C1 H1K . . . B 2 20.479 -3.896 8.688 1 31.07 ? C1 H1K 301 A 1 HETATM 19 CL CL H1K . . . B 2 21.648 -3.096 7.769 1 31.7 ? CL H1K 301 A 1 HETATM 20 O O3 H1K . . . B 2 22.117 -5.557 9.372 1 33.19 ? O3 H1K 301 A 1 HETATM 21 C C13 H1K . . . B 2 22.502 -6.631 10.245 1 30.79 ? C13 H1K 301 A 1 HETATM 22 H H3 H1K . . . B 2 14.262 -2.115 8.557 0 30.61 ? H3 H1K 301 A 1 HETATM 23 H H6 H1K . . . B 2 15.01 -5.084 10.904 0 26.87 ? H6 H1K 301 A 1 HETATM 24 H H5 H1K . . . B 2 11.559 -4.343 13.1 0 26.35 ? H5 H1K 301 A 1 HETATM 25 H H4 H1K . . . B 2 11.227 -2.151 11.797 0 26.05 ? H4 H1K 301 A 1 HETATM 26 H H2 H1K . . . B 2 16.26 -4.648 9.393 0 31.06 ? H2 H1K 301 A 1 HETATM 27 H H1 H1K . . . B 2 18.958 -2.54 8.04 0 30.57 ? H1 H1K 301 A 1 HETATM 28 H H9 H1K . . . B 2 17.891 -7.761 10.945 0 36.68 ? H9 H1K 301 A 1 HETATM 29 H H7 H1K . . . B 2 16.565 -7.249 11.992 0 36.68 ? H7 H1K 301 A 1 HETATM 30 H H8 H1K . . . B 2 18.23 -6.928 12.497 0 36.68 ? H8 H1K 301 A 1 HETATM 31 H H10 H1K . . . B 2 20.075 -6.541 10.851 0 32.97 ? H10 H1K 301 A 1 HETATM 32 H H12 H1K . . . B 2 22 -7.571 10.02 0 31.01 ? H12 H1K 301 A 1 HETATM 33 H H11 H1K . . . B 2 23.57 -6.769 10.075 0 31.01 ? H11 H1K 301 A 1 HETATM 34 H H13 H1K . . . B 2 22.352 -6.361 11.29 0 31.01 ? H13 H1K 301 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #