data_4FT4 # _model_server_result.job_id EpWtsq8CrnKnuBCoengzog _model_server_result.datetime_utc '2024-12-26 15:50:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ft4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1000}' # _entry.id 4FT4 # _exptl.entry_id 4FT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.98 _cell.angle_gamma 90 _cell.entry_id 4FT4 _cell.length_a 64.645 _cell.length_b 111.558 _cell.length_c 151.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,I 1 1 B,C,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ARG 8 P ARG 8 1_555 C N MLY 9 P MLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C MLY 9 P MLY 9 1_555 C N SER 10 P SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 D C ARG 8 Q ARG 8 1_555 D N MLY 9 Q MLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 D C MLY 9 Q MLY 9 1_555 D N SER 10 Q SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 306 n n N HN1 SAH sing 307 n n N HN2 SAH sing 308 n n CA CB SAH sing 309 n n CA C SAH sing 310 n n CA HA SAH sing 311 n n CB CG SAH sing 312 n n CB HB1 SAH sing 313 n n CB HB2 SAH sing 314 n n CG SD SAH sing 315 n n CG HG1 SAH sing 316 n n CG HG2 SAH sing 317 n n SD C5' SAH sing 318 n n C O SAH doub 319 n n C OXT SAH sing 320 n n OXT HXT SAH sing 321 n n C5' C4' SAH sing 322 n n C5' "H5'1" SAH sing 323 n n C5' "H5'2" SAH sing 324 n n C4' O4' SAH sing 325 n n C4' C3' SAH sing 326 n n C4' H4' SAH sing 327 n n O4' C1' SAH sing 328 n n C3' O3' SAH sing 329 n n C3' C2' SAH sing 330 n n C3' H3' SAH sing 331 n n O3' HO3' SAH sing 332 n n C2' O2' SAH sing 333 n n C2' C1' SAH sing 334 n n C2' H2' SAH sing 335 n n O2' HO2' SAH sing 336 n n C1' N9 SAH sing 337 n n C1' H1' SAH sing 338 n n N9 C8 SAH sing 339 n y N9 C4 SAH sing 340 n y C8 N7 SAH doub 341 n y C8 H8 SAH sing 342 n n N7 C5 SAH sing 343 n y C5 C6 SAH sing 344 n y C5 C4 SAH doub 345 n y C6 N6 SAH sing 346 n n C6 N1 SAH doub 347 n y N6 HN61 SAH sing 348 n n N6 HN62 SAH sing 349 n n N1 C2 SAH sing 350 n y C2 N3 SAH doub 351 n y C2 H2 SAH sing 352 n n N3 C4 SAH sing 353 n y # _atom_sites.entry_id 4FT4 _atom_sites.fract_transf_matrix[1][1] 0.015469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003282 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SAH B 1 1000 1000 SAH SAH . F 3 SAH A 1 1000 1000 SAH SAH . G 4 HOH B 1 1101 1 HOH HOH . G 4 HOH B 2 1102 2 HOH HOH . G 4 HOH B 3 1103 3 HOH HOH . G 4 HOH B 4 1104 4 HOH HOH . G 4 HOH B 5 1105 5 HOH HOH . G 4 HOH B 6 1106 6 HOH HOH . G 4 HOH B 7 1107 7 HOH HOH . G 4 HOH B 8 1108 8 HOH HOH . G 4 HOH B 9 1109 9 HOH HOH . G 4 HOH B 10 1110 10 HOH HOH . G 4 HOH B 11 1111 11 HOH HOH . G 4 HOH B 12 1112 12 HOH HOH . G 4 HOH B 13 1113 13 HOH HOH . G 4 HOH B 14 1114 14 HOH HOH . G 4 HOH B 15 1115 15 HOH HOH . G 4 HOH B 16 1116 16 HOH HOH . G 4 HOH B 17 1117 17 HOH HOH . G 4 HOH B 18 1118 18 HOH HOH . G 4 HOH B 19 1119 19 HOH HOH . G 4 HOH B 20 1120 20 HOH HOH . G 4 HOH B 21 1121 21 HOH HOH . G 4 HOH B 22 1122 22 HOH HOH . G 4 HOH B 23 1123 23 HOH HOH . G 4 HOH B 24 1124 24 HOH HOH . G 4 HOH B 25 1125 25 HOH HOH . G 4 HOH B 26 1126 27 HOH HOH . G 4 HOH B 27 1127 28 HOH HOH . G 4 HOH B 28 1128 30 HOH HOH . G 4 HOH B 29 1129 31 HOH HOH . G 4 HOH B 30 1130 32 HOH HOH . G 4 HOH B 31 1131 33 HOH HOH . G 4 HOH B 32 1132 34 HOH HOH . G 4 HOH B 33 1133 36 HOH HOH . G 4 HOH B 34 1134 37 HOH HOH . G 4 HOH B 35 1135 38 HOH HOH . G 4 HOH B 36 1136 39 HOH HOH . G 4 HOH B 37 1137 40 HOH HOH . G 4 HOH B 38 1138 42 HOH HOH . G 4 HOH B 39 1139 43 HOH HOH . G 4 HOH B 40 1140 44 HOH HOH . G 4 HOH B 41 1141 45 HOH HOH . G 4 HOH B 42 1142 46 HOH HOH . G 4 HOH B 43 1143 47 HOH HOH . G 4 HOH B 44 1144 48 HOH HOH . G 4 HOH B 45 1145 49 HOH HOH . G 4 HOH B 46 1146 50 HOH HOH . G 4 HOH B 47 1147 51 HOH HOH . G 4 HOH B 48 1148 53 HOH HOH . G 4 HOH B 49 1149 54 HOH HOH . G 4 HOH B 50 1150 55 HOH HOH . G 4 HOH B 51 1151 57 HOH HOH . G 4 HOH B 52 1152 59 HOH HOH . G 4 HOH B 53 1153 60 HOH HOH . G 4 HOH B 54 1154 61 HOH HOH . G 4 HOH B 55 1155 62 HOH HOH . G 4 HOH B 56 1156 63 HOH HOH . G 4 HOH B 57 1157 64 HOH HOH . G 4 HOH B 58 1158 66 HOH HOH . G 4 HOH B 59 1159 67 HOH HOH . G 4 HOH B 60 1160 68 HOH HOH . G 4 HOH B 61 1161 71 HOH HOH . G 4 HOH B 62 1162 72 HOH HOH . G 4 HOH B 63 1163 73 HOH HOH . G 4 HOH B 64 1164 74 HOH HOH . G 4 HOH B 65 1165 75 HOH HOH . G 4 HOH B 66 1166 77 HOH HOH . G 4 HOH B 67 1167 78 HOH HOH . G 4 HOH B 68 1168 80 HOH HOH . G 4 HOH B 69 1169 81 HOH HOH . G 4 HOH B 70 1170 82 HOH HOH . G 4 HOH B 71 1171 83 HOH HOH . G 4 HOH B 72 1172 84 HOH HOH . G 4 HOH B 73 1173 85 HOH HOH . G 4 HOH B 74 1174 86 HOH HOH . G 4 HOH B 75 1175 87 HOH HOH . G 4 HOH B 76 1176 88 HOH HOH . G 4 HOH B 77 1177 89 HOH HOH . G 4 HOH B 78 1178 90 HOH HOH . G 4 HOH B 79 1179 91 HOH HOH . G 4 HOH B 80 1180 92 HOH HOH . G 4 HOH B 81 1181 93 HOH HOH . G 4 HOH B 82 1182 94 HOH HOH . G 4 HOH B 83 1183 95 HOH HOH . G 4 HOH B 84 1184 96 HOH HOH . G 4 HOH B 85 1185 98 HOH HOH . G 4 HOH B 86 1186 100 HOH HOH . G 4 HOH B 87 1187 101 HOH HOH . G 4 HOH B 88 1188 102 HOH HOH . G 4 HOH B 89 1189 103 HOH HOH . G 4 HOH B 90 1190 104 HOH HOH . G 4 HOH B 91 1191 105 HOH HOH . G 4 HOH B 92 1192 106 HOH HOH . G 4 HOH B 93 1193 107 HOH HOH . G 4 HOH B 94 1194 109 HOH HOH . G 4 HOH B 95 1195 110 HOH HOH . G 4 HOH B 96 1196 111 HOH HOH . G 4 HOH B 97 1197 114 HOH HOH . G 4 HOH B 98 1198 116 HOH HOH . G 4 HOH B 99 1199 117 HOH HOH . G 4 HOH B 100 1200 119 HOH HOH . G 4 HOH B 101 1201 120 HOH HOH . G 4 HOH B 102 1202 121 HOH HOH . G 4 HOH B 103 1203 122 HOH HOH . G 4 HOH B 104 1204 123 HOH HOH . G 4 HOH B 105 1205 126 HOH HOH . G 4 HOH B 106 1206 129 HOH HOH . G 4 HOH B 107 1207 130 HOH HOH . G 4 HOH B 108 1208 131 HOH HOH . G 4 HOH B 109 1209 132 HOH HOH . G 4 HOH B 110 1210 133 HOH HOH . G 4 HOH B 111 1211 134 HOH HOH . G 4 HOH B 112 1212 135 HOH HOH . G 4 HOH B 113 1213 136 HOH HOH . G 4 HOH B 114 1214 137 HOH HOH . G 4 HOH B 115 1215 138 HOH HOH . G 4 HOH B 116 1216 139 HOH HOH . G 4 HOH B 117 1217 140 HOH HOH . G 4 HOH B 118 1218 141 HOH HOH . G 4 HOH B 119 1219 142 HOH HOH . G 4 HOH B 120 1220 144 HOH HOH . G 4 HOH B 121 1221 145 HOH HOH . G 4 HOH B 122 1222 146 HOH HOH . G 4 HOH B 123 1223 148 HOH HOH . G 4 HOH B 124 1224 151 HOH HOH . G 4 HOH B 125 1225 152 HOH HOH . G 4 HOH B 126 1226 153 HOH HOH . G 4 HOH B 127 1227 154 HOH HOH . G 4 HOH B 128 1228 155 HOH HOH . G 4 HOH B 129 1229 156 HOH HOH . G 4 HOH B 130 1230 157 HOH HOH . G 4 HOH B 131 1231 158 HOH HOH . G 4 HOH B 132 1232 159 HOH HOH . H 4 HOH A 1 1101 26 HOH HOH . H 4 HOH A 2 1102 29 HOH HOH . H 4 HOH A 3 1103 35 HOH HOH . H 4 HOH A 4 1104 41 HOH HOH . H 4 HOH A 5 1105 52 HOH HOH . H 4 HOH A 6 1106 56 HOH HOH . H 4 HOH A 7 1107 58 HOH HOH . H 4 HOH A 8 1108 65 HOH HOH . H 4 HOH A 9 1109 70 HOH HOH . H 4 HOH A 10 1110 76 HOH HOH . H 4 HOH A 11 1111 79 HOH HOH . H 4 HOH A 12 1112 97 HOH HOH . H 4 HOH A 13 1113 99 HOH HOH . H 4 HOH A 14 1114 108 HOH HOH . H 4 HOH A 15 1115 112 HOH HOH . H 4 HOH A 16 1116 113 HOH HOH . H 4 HOH A 17 1117 115 HOH HOH . H 4 HOH A 18 1118 118 HOH HOH . H 4 HOH A 19 1119 124 HOH HOH . H 4 HOH A 20 1120 125 HOH HOH . H 4 HOH A 21 1121 127 HOH HOH . H 4 HOH A 22 1122 128 HOH HOH . H 4 HOH A 23 1123 143 HOH HOH . H 4 HOH A 24 1124 147 HOH HOH . H 4 HOH A 25 1125 149 HOH HOH . H 4 HOH A 26 1126 150 HOH HOH . H 4 HOH A 27 1127 160 HOH HOH . I 4 HOH Q 1 101 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 3 -3.818 -6.582 -56.062 1 31.61 ? N SAH 1000 B 1 HETATM 2 C CA SAH . . . E 3 -2.626 -6.806 -55.23 1 40.98 ? CA SAH 1000 B 1 HETATM 3 C CB SAH . . . E 3 -2.663 -8.217 -54.621 1 34.85 ? CB SAH 1000 B 1 HETATM 4 C CG SAH . . . E 3 -3.888 -8.262 -53.707 1 11.64 ? CG SAH 1000 B 1 HETATM 5 S SD SAH . . . E 3 -4.262 -9.82 -52.812 1 35.42 ? SD SAH 1000 B 1 HETATM 6 C C SAH . . . E 3 -1.392 -6.625 -56.109 1 41.44 ? C SAH 1000 B 1 HETATM 7 O O SAH . . . E 3 -0.305 -6.471 -55.508 1 40.84 ? O SAH 1000 B 1 HETATM 8 O OXT SAH . . . E 3 -1.565 -6.624 -57.348 1 42.82 ? OXT SAH 1000 B 1 HETATM 9 C C5' SAH . . . E 3 -5.542 -8.953 -51.827 1 47.08 ? C5' SAH 1000 B 1 HETATM 10 C C4' SAH . . . E 3 -4.776 -7.958 -50.944 1 59.46 ? C4' SAH 1000 B 1 HETATM 11 O O4' SAH . . . E 3 -5.972 -8.305 -50.101 1 55.65 ? O4' SAH 1000 B 1 HETATM 12 C C3' SAH . . . E 3 -3.856 -8.121 -49.723 1 44.08 ? C3' SAH 1000 B 1 HETATM 13 O O3' SAH . . . E 3 -3.51 -6.864 -49.204 1 67.92 ? O3' SAH 1000 B 1 HETATM 14 C C2' SAH . . . E 3 -4.803 -8.814 -48.837 1 30.69 ? C2' SAH 1000 B 1 HETATM 15 O O2' SAH . . . E 3 -4.227 -8.888 -47.531 1 32.78 ? O2' SAH 1000 B 1 HETATM 16 C C1' SAH . . . E 3 -5.799 -7.6 -48.888 1 38.87 ? C1' SAH 1000 B 1 HETATM 17 N N9 SAH . . . E 3 -6.967 -7.91 -48.061 1 36.13 ? N9 SAH 1000 B 1 HETATM 18 C C8 SAH . . . E 3 -7.532 -9.077 -47.774 1 43.4 ? C8 SAH 1000 B 1 HETATM 19 N N7 SAH . . . E 3 -8.569 -8.839 -46.97 1 31.58 ? N7 SAH 1000 B 1 HETATM 20 C C5 SAH . . . E 3 -8.638 -7.529 -46.749 1 24.9 ? C5 SAH 1000 B 1 HETATM 21 C C6 SAH . . . E 3 -9.484 -6.797 -46.026 1 29.19 ? C6 SAH 1000 B 1 HETATM 22 N N6 SAH . . . E 3 -10.445 -7.462 -45.395 1 46.02 ? N6 SAH 1000 B 1 HETATM 23 N N1 SAH . . . E 3 -9.376 -5.467 -45.935 1 26.85 ? N1 SAH 1000 B 1 HETATM 24 C C2 SAH . . . E 3 -8.342 -4.838 -46.623 1 30.01 ? C2 SAH 1000 B 1 HETATM 25 N N3 SAH . . . E 3 -7.47 -5.628 -47.375 1 33.59 ? N3 SAH 1000 B 1 HETATM 26 C C4 SAH . . . E 3 -7.629 -6.959 -47.403 1 36 ? C4 SAH 1000 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #