data_4FT5 # _model_server_result.job_id AVk75Su2xFNTkGjSPbP9Ew _model_server_result.datetime_utc '2024-12-21 12:47:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ft5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 4FT5 # _exptl.entry_id 4FT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.782 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{5-chloro-2-[(3R)-pyrrolidin-3-yloxy]phenyl}-3-(5-cyanopyrazin-2-yl)urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.27 _cell.angle_gamma 90 _cell.entry_id 4FT5 _cell.length_a 44.898 _cell.length_b 65.572 _cell.length_c 57.835 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H15 Cl N6 O2' _chem_comp.formula_weight 358.782 _chem_comp.id H2K _chem_comp.mon_nstd_flag . _chem_comp.name 1-{5-chloro-2-[(3R)-pyrrolidin-3-yloxy]phenyl}-3-(5-cyanopyrazin-2-yl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C1 H2K sing 142 n n O2 C10 H2K doub 143 n n C16 C1 H2K doub 144 n y C16 C9 H2K sing 145 n y C1 C2 H2K sing 146 n y C10 N2 H2K sing 147 n n C10 N3 H2K sing 148 n n N2 C9 H2K sing 149 n n C2 C3 H2K doub 150 n y C9 C4 H2K doub 151 n y N3 C11 H2K sing 152 n n C3 C4 H2K sing 153 n y C4 O1 H2K sing 154 n n C11 N5 H2K doub 155 n y C11 C12 H2K sing 156 n y N5 C14 H2K sing 157 n y C12 N4 H2K doub 158 n y O1 C5 H2K sing 159 n n C14 C13 H2K doub 160 n y N4 C13 H2K sing 161 n y C13 C15 H2K sing 162 n n C6 C5 H2K sing 163 n n C6 C7 H2K sing 164 n n C5 C8 H2K sing 165 n n C15 N6 H2K trip 166 n n C7 N1 H2K sing 167 n n C8 N1 H2K sing 168 n n C12 H13 H2K sing 169 n n C14 H14 H2K sing 170 n n N3 H12 H2K sing 171 n n N2 H11 H2K sing 172 n n C16 H15 H2K sing 173 n n C3 H2 H2K sing 174 n n C2 H1 H2K sing 175 n n C5 H3 H2K sing 176 n n C8 H9 H2K sing 177 n n C8 H10 H2K sing 178 n n N1 H8 H2K sing 179 n n C7 H6 H2K sing 180 n n C7 H7 H2K sing 181 n n C6 H4 H2K sing 182 n n C6 H5 H2K sing 183 n n # _atom_sites.entry_id 4FT5 _atom_sites.fract_transf_matrix[1][1] 0.022273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H2K A 1 300 300 H2K H2K . C 3 SO4 A 1 301 301 SO4 SO4 . D 4 GOL A 1 302 302 GOL GOL . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 14 HOH HOH . E 5 HOH A 15 415 15 HOH HOH . E 5 HOH A 16 416 16 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 18 HOH HOH . E 5 HOH A 19 419 19 HOH HOH . E 5 HOH A 20 420 20 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 22 HOH HOH . E 5 HOH A 23 423 23 HOH HOH . E 5 HOH A 24 424 24 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 26 HOH HOH . E 5 HOH A 27 427 27 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 29 HOH HOH . E 5 HOH A 30 430 30 HOH HOH . E 5 HOH A 31 431 31 HOH HOH . E 5 HOH A 32 432 32 HOH HOH . E 5 HOH A 33 433 33 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 35 HOH HOH . E 5 HOH A 36 436 36 HOH HOH . E 5 HOH A 37 437 37 HOH HOH . E 5 HOH A 38 438 38 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 40 HOH HOH . E 5 HOH A 41 441 41 HOH HOH . E 5 HOH A 42 442 42 HOH HOH . E 5 HOH A 43 443 43 HOH HOH . E 5 HOH A 44 444 44 HOH HOH . E 5 HOH A 45 445 45 HOH HOH . E 5 HOH A 46 446 46 HOH HOH . E 5 HOH A 47 447 47 HOH HOH . E 5 HOH A 48 448 48 HOH HOH . E 5 HOH A 49 449 49 HOH HOH . E 5 HOH A 50 450 50 HOH HOH . E 5 HOH A 51 451 51 HOH HOH . E 5 HOH A 52 452 52 HOH HOH . E 5 HOH A 53 453 53 HOH HOH . E 5 HOH A 54 454 54 HOH HOH . E 5 HOH A 55 455 55 HOH HOH . E 5 HOH A 56 456 56 HOH HOH . E 5 HOH A 57 457 57 HOH HOH . E 5 HOH A 58 458 58 HOH HOH . E 5 HOH A 59 459 59 HOH HOH . E 5 HOH A 60 460 60 HOH HOH . E 5 HOH A 61 461 61 HOH HOH . E 5 HOH A 62 462 62 HOH HOH . E 5 HOH A 63 463 63 HOH HOH . E 5 HOH A 64 464 64 HOH HOH . E 5 HOH A 65 465 65 HOH HOH . E 5 HOH A 66 466 66 HOH HOH . E 5 HOH A 67 467 67 HOH HOH . E 5 HOH A 68 468 68 HOH HOH . E 5 HOH A 69 469 69 HOH HOH . E 5 HOH A 70 470 70 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 72 HOH HOH . E 5 HOH A 73 473 73 HOH HOH . E 5 HOH A 74 474 74 HOH HOH . E 5 HOH A 75 475 75 HOH HOH . E 5 HOH A 76 476 76 HOH HOH . E 5 HOH A 77 477 77 HOH HOH . E 5 HOH A 78 478 78 HOH HOH . E 5 HOH A 79 479 79 HOH HOH . E 5 HOH A 80 480 80 HOH HOH . E 5 HOH A 81 481 81 HOH HOH . E 5 HOH A 82 482 82 HOH HOH . E 5 HOH A 83 483 83 HOH HOH . E 5 HOH A 84 484 84 HOH HOH . E 5 HOH A 85 485 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N6 H2K . . . B 2 10.306 -5.603 13.555 1 41.77 ? N6 H2K 300 A 1 HETATM 2 C C15 H2K . . . B 2 11.053 -5.008 12.935 1 41.02 ? C15 H2K 300 A 1 HETATM 3 C C13 H2K . . . B 2 12.027 -4.353 12.149 1 42.95 ? C13 H2K 300 A 1 HETATM 4 N N4 H2K . . . B 2 13.162 -5.035 11.926 1 42.19 ? N4 H2K 300 A 1 HETATM 5 C C12 H2K . . . B 2 14.073 -4.477 11.121 1 40.61 ? C12 H2K 300 A 1 HETATM 6 C C14 H2K . . . B 2 11.804 -3.068 11.552 1 43.34 ? C14 H2K 300 A 1 HETATM 7 N N5 H2K . . . B 2 12.724 -2.52 10.743 1 42.64 ? N5 H2K 300 A 1 HETATM 8 C C11 H2K . . . B 2 13.846 -3.227 10.507 1 42.75 ? C11 H2K 300 A 1 HETATM 9 N N3 H2K . . . B 2 14.697 -2.545 9.611 1 45.17 ? N3 H2K 300 A 1 HETATM 10 C C10 H2K . . . B 2 15.957 -2.759 9.097 1 46.85 ? C10 H2K 300 A 1 HETATM 11 O O2 H2K . . . B 2 16.488 -1.962 8.328 1 47.75 ? O2 H2K 300 A 1 HETATM 12 N N2 H2K . . . B 2 16.561 -3.927 9.503 1 46.72 ? N2 H2K 300 A 1 HETATM 13 C C9 H2K . . . B 2 17.959 -4.206 9.562 1 47.95 ? C9 H2K 300 A 1 HETATM 14 C C16 H2K . . . B 2 18.908 -3.563 8.772 1 48.03 ? C16 H2K 300 A 1 HETATM 15 C C1 H2K . . . B 2 20.221 -4.002 8.791 1 50.08 ? C1 H2K 300 A 1 HETATM 16 CL CL H2K . . . B 2 21.406 -3.162 7.843 1 50.36 ? CL H2K 300 A 1 HETATM 17 C C4 H2K . . . B 2 18.37 -5.294 10.373 1 50.66 ? C4 H2K 300 A 1 HETATM 18 C C3 H2K . . . B 2 19.685 -5.732 10.341 1 50.36 ? C3 H2K 300 A 1 HETATM 19 C C2 H2K . . . B 2 20.612 -5.078 9.557 1 50.61 ? C2 H2K 300 A 1 HETATM 20 O O1 H2K . . . B 2 17.41 -5.857 11.189 1 54.17 ? O1 H2K 300 A 1 HETATM 21 C C5 H2K . . . B 2 17.849 -6.45 12.437 1 55.07 ? C5 H2K 300 A 1 HETATM 22 C C8 H2K . . . B 2 16.778 -6.182 13.531 1 54.94 ? C8 H2K 300 A 1 HETATM 23 N N1 H2K . . . B 2 15.964 -7.406 13.542 1 55.04 ? N1 H2K 300 A 1 HETATM 24 C C7 H2K . . . B 2 16.864 -8.524 13.237 1 55.72 ? C7 H2K 300 A 1 HETATM 25 C C6 H2K . . . B 2 17.881 -7.955 12.238 1 56.31 ? C6 H2K 300 A 1 HETATM 26 H H13 H2K . . . B 2 14.965 -5.094 11.083 0 40.47 ? H13 H2K 300 A 1 HETATM 27 H H14 H2K . . . B 2 10.884 -2.499 11.67 0 43.56 ? H14 H2K 300 A 1 HETATM 28 H H12 H2K . . . B 2 14.245 -1.698 9.285 0 45.06 ? H12 H2K 300 A 1 HETATM 29 H H11 H2K . . . B 2 16.02 -4.779 9.587 0 46.62 ? H11 H2K 300 A 1 HETATM 30 H H15 H2K . . . B 2 18.686 -2.743 8.091 0 48.08 ? H15 H2K 300 A 1 HETATM 31 H H2 H2K . . . B 2 20.025 -6.605 10.894 0 50.41 ? H2 H2K 300 A 1 HETATM 32 H H1 H2K . . . B 2 21.653 -5.406 9.533 0 50.62 ? H1 H2K 300 A 1 HETATM 33 H H3 H2K . . . B 2 18.796 -6.046 12.789 0 55.16 ? H3 H2K 300 A 1 HETATM 34 H H9 H2K . . . B 2 16.229 -5.259 13.349 0 54.94 ? H9 H2K 300 A 1 HETATM 35 H H10 H2K . . . B 2 17.222 -6.058 14.517 0 54.94 ? H10 H2K 300 A 1 HETATM 36 H H8 H2K . . . B 2 15.166 -7.358 12.916 0 54.94 ? H8 H2K 300 A 1 HETATM 37 H H6 H2K . . . B 2 16.37 -9.398 12.816 0 55.75 ? H6 H2K 300 A 1 HETATM 38 H H7 H2K . . . B 2 17.328 -8.865 14.162 0 55.75 ? H7 H2K 300 A 1 HETATM 39 H H4 H2K . . . B 2 17.627 -8.217 11.212 0 56.36 ? H4 H2K 300 A 1 HETATM 40 H H5 H2K . . . B 2 18.865 -8.392 12.404 0 56.36 ? H5 H2K 300 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #