data_4FV1 # _model_server_result.job_id u6_I0Px0mriUGWQfT_eQJA _model_server_result.datetime_utc '2024-11-29 14:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4FV1 # _exptl.entry_id 4FV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.95 _cell.angle_gamma 90 _cell.entry_id 4FV1 _cell.length_a 48.75 _cell.length_b 70.07 _cell.length_c 60.33 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 160 A THR 158 1_555 A N CME 161 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CME 161 A CME 159 1_555 A N ASP 162 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 213 n n C1 C2 GOL sing 214 n n C1 H11 GOL sing 215 n n C1 H12 GOL sing 216 n n O1 HO1 GOL sing 217 n n C2 O2 GOL sing 218 n n C2 C3 GOL sing 219 n n C2 H2 GOL sing 220 n n O2 HO2 GOL sing 221 n n C3 O3 GOL sing 222 n n C3 H31 GOL sing 223 n n C3 H32 GOL sing 224 n n O3 HO3 GOL sing 225 n n # _atom_sites.entry_id 4FV1 _atom_sites.fract_transf_matrix[1][1] 0.020513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007446 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EK4 A 1 401 1 EK4 EK4 . C 3 GOL A 1 402 1 GOL GOL . D 4 SO4 A 1 403 2 SO4 SO4 . E 5 EDO A 1 404 1 EDO EDO . F 5 EDO A 1 405 2 EDO EDO . G 5 EDO A 1 406 3 EDO EDO . H 5 EDO A 1 407 5 EDO EDO . I 6 HOH A 1 501 1 HOH HOH . I 6 HOH A 2 502 2 HOH HOH . I 6 HOH A 3 503 3 HOH HOH . I 6 HOH A 4 504 4 HOH HOH . I 6 HOH A 5 505 5 HOH HOH . I 6 HOH A 6 506 6 HOH HOH . I 6 HOH A 7 507 7 HOH HOH . I 6 HOH A 8 508 8 HOH HOH . I 6 HOH A 9 509 9 HOH HOH . I 6 HOH A 10 510 10 HOH HOH . I 6 HOH A 11 511 11 HOH HOH . I 6 HOH A 12 512 12 HOH HOH . I 6 HOH A 13 513 13 HOH HOH . I 6 HOH A 14 514 14 HOH HOH . I 6 HOH A 15 515 15 HOH HOH . I 6 HOH A 16 516 16 HOH HOH . I 6 HOH A 17 517 17 HOH HOH . I 6 HOH A 18 518 18 HOH HOH . I 6 HOH A 19 519 19 HOH HOH . I 6 HOH A 20 520 20 HOH HOH . I 6 HOH A 21 521 21 HOH HOH . I 6 HOH A 22 522 22 HOH HOH . I 6 HOH A 23 523 23 HOH HOH . I 6 HOH A 24 524 24 HOH HOH . I 6 HOH A 25 525 25 HOH HOH . I 6 HOH A 26 526 26 HOH HOH . I 6 HOH A 27 527 27 HOH HOH . I 6 HOH A 28 528 28 HOH HOH . I 6 HOH A 29 529 29 HOH HOH . I 6 HOH A 30 530 30 HOH HOH . I 6 HOH A 31 531 31 HOH HOH . I 6 HOH A 32 532 32 HOH HOH . I 6 HOH A 33 533 33 HOH HOH . I 6 HOH A 34 534 34 HOH HOH . I 6 HOH A 35 535 35 HOH HOH . I 6 HOH A 36 536 36 HOH HOH . I 6 HOH A 37 537 37 HOH HOH . I 6 HOH A 38 538 38 HOH HOH . I 6 HOH A 39 539 39 HOH HOH . I 6 HOH A 40 540 40 HOH HOH . I 6 HOH A 41 541 41 HOH HOH . I 6 HOH A 42 542 42 HOH HOH . I 6 HOH A 43 543 43 HOH HOH . I 6 HOH A 44 544 44 HOH HOH . I 6 HOH A 45 545 45 HOH HOH . I 6 HOH A 46 546 46 HOH HOH . I 6 HOH A 47 547 47 HOH HOH . I 6 HOH A 48 548 48 HOH HOH . I 6 HOH A 49 549 49 HOH HOH . I 6 HOH A 50 550 50 HOH HOH . I 6 HOH A 51 551 51 HOH HOH . I 6 HOH A 52 552 52 HOH HOH . I 6 HOH A 53 553 53 HOH HOH . I 6 HOH A 54 554 54 HOH HOH . I 6 HOH A 55 555 55 HOH HOH . I 6 HOH A 56 556 56 HOH HOH . I 6 HOH A 57 557 57 HOH HOH . I 6 HOH A 58 558 58 HOH HOH . I 6 HOH A 59 559 59 HOH HOH . I 6 HOH A 60 560 60 HOH HOH . I 6 HOH A 61 561 61 HOH HOH . I 6 HOH A 62 562 62 HOH HOH . I 6 HOH A 63 563 63 HOH HOH . I 6 HOH A 64 564 64 HOH HOH . I 6 HOH A 65 565 65 HOH HOH . I 6 HOH A 66 566 66 HOH HOH . I 6 HOH A 67 567 67 HOH HOH . I 6 HOH A 68 568 68 HOH HOH . I 6 HOH A 69 569 69 HOH HOH . I 6 HOH A 70 570 70 HOH HOH . I 6 HOH A 71 571 71 HOH HOH . I 6 HOH A 72 572 72 HOH HOH . I 6 HOH A 73 573 73 HOH HOH . I 6 HOH A 74 574 74 HOH HOH . I 6 HOH A 75 575 75 HOH HOH . I 6 HOH A 76 576 76 HOH HOH . I 6 HOH A 77 577 77 HOH HOH . I 6 HOH A 78 578 78 HOH HOH . I 6 HOH A 79 579 79 HOH HOH . I 6 HOH A 80 580 80 HOH HOH . I 6 HOH A 81 581 81 HOH HOH . I 6 HOH A 82 582 82 HOH HOH . I 6 HOH A 83 583 83 HOH HOH . I 6 HOH A 84 584 84 HOH HOH . I 6 HOH A 85 585 85 HOH HOH . I 6 HOH A 86 586 86 HOH HOH . I 6 HOH A 87 587 87 HOH HOH . I 6 HOH A 88 588 88 HOH HOH . I 6 HOH A 89 589 89 HOH HOH . I 6 HOH A 90 590 90 HOH HOH . I 6 HOH A 91 591 91 HOH HOH . I 6 HOH A 92 592 92 HOH HOH . I 6 HOH A 93 593 93 HOH HOH . I 6 HOH A 94 594 94 HOH HOH . I 6 HOH A 95 595 95 HOH HOH . I 6 HOH A 96 596 96 HOH HOH . I 6 HOH A 97 597 97 HOH HOH . I 6 HOH A 98 598 98 HOH HOH . I 6 HOH A 99 599 99 HOH HOH . I 6 HOH A 100 600 100 HOH HOH . I 6 HOH A 101 601 101 HOH HOH . I 6 HOH A 102 602 102 HOH HOH . I 6 HOH A 103 603 103 HOH HOH . I 6 HOH A 104 604 104 HOH HOH . I 6 HOH A 105 605 105 HOH HOH . I 6 HOH A 106 606 106 HOH HOH . I 6 HOH A 107 607 107 HOH HOH . I 6 HOH A 108 608 108 HOH HOH . I 6 HOH A 109 609 109 HOH HOH . I 6 HOH A 110 610 110 HOH HOH . I 6 HOH A 111 611 111 HOH HOH . I 6 HOH A 112 612 112 HOH HOH . I 6 HOH A 113 613 113 HOH HOH . I 6 HOH A 114 614 114 HOH HOH . I 6 HOH A 115 615 115 HOH HOH . I 6 HOH A 116 616 116 HOH HOH . I 6 HOH A 117 617 117 HOH HOH . I 6 HOH A 118 618 118 HOH HOH . I 6 HOH A 119 619 119 HOH HOH . I 6 HOH A 120 620 120 HOH HOH . I 6 HOH A 121 621 121 HOH HOH . I 6 HOH A 122 622 122 HOH HOH . I 6 HOH A 123 623 123 HOH HOH . I 6 HOH A 124 624 124 HOH HOH . I 6 HOH A 125 625 125 HOH HOH . I 6 HOH A 126 626 126 HOH HOH . I 6 HOH A 127 627 127 HOH HOH . I 6 HOH A 128 628 128 HOH HOH . I 6 HOH A 129 629 129 HOH HOH . I 6 HOH A 130 630 130 HOH HOH . I 6 HOH A 131 631 131 HOH HOH . I 6 HOH A 132 632 132 HOH HOH . I 6 HOH A 133 633 133 HOH HOH . I 6 HOH A 134 634 134 HOH HOH . I 6 HOH A 135 635 135 HOH HOH . I 6 HOH A 136 636 136 HOH HOH . I 6 HOH A 137 637 137 HOH HOH . I 6 HOH A 138 638 138 HOH HOH . I 6 HOH A 139 639 139 HOH HOH . I 6 HOH A 140 640 140 HOH HOH . I 6 HOH A 141 641 141 HOH HOH . I 6 HOH A 142 642 142 HOH HOH . I 6 HOH A 143 643 143 HOH HOH . I 6 HOH A 144 644 144 HOH HOH . I 6 HOH A 145 645 145 HOH HOH . I 6 HOH A 146 646 146 HOH HOH . I 6 HOH A 147 647 147 HOH HOH . I 6 HOH A 148 648 148 HOH HOH . I 6 HOH A 149 649 149 HOH HOH . I 6 HOH A 150 650 151 HOH HOH . I 6 HOH A 151 651 152 HOH HOH . I 6 HOH A 152 652 153 HOH HOH . I 6 HOH A 153 653 154 HOH HOH . I 6 HOH A 154 654 155 HOH HOH . I 6 HOH A 155 655 156 HOH HOH . I 6 HOH A 156 656 157 HOH HOH . I 6 HOH A 157 657 158 HOH HOH . I 6 HOH A 158 658 159 HOH HOH . I 6 HOH A 159 659 160 HOH HOH . I 6 HOH A 160 660 161 HOH HOH . I 6 HOH A 161 661 162 HOH HOH . I 6 HOH A 162 662 163 HOH HOH . I 6 HOH A 163 663 165 HOH HOH . I 6 HOH A 164 664 166 HOH HOH . I 6 HOH A 165 665 168 HOH HOH . I 6 HOH A 166 666 169 HOH HOH . I 6 HOH A 167 667 170 HOH HOH . I 6 HOH A 168 668 171 HOH HOH . I 6 HOH A 169 669 173 HOH HOH . I 6 HOH A 170 670 174 HOH HOH . I 6 HOH A 171 671 175 HOH HOH . I 6 HOH A 172 672 176 HOH HOH . I 6 HOH A 173 673 177 HOH HOH . I 6 HOH A 174 674 178 HOH HOH . I 6 HOH A 175 675 179 HOH HOH . I 6 HOH A 176 676 180 HOH HOH . I 6 HOH A 177 677 181 HOH HOH . I 6 HOH A 178 678 182 HOH HOH . I 6 HOH A 179 679 183 HOH HOH . I 6 HOH A 180 680 184 HOH HOH . I 6 HOH A 181 681 185 HOH HOH . I 6 HOH A 182 682 186 HOH HOH . I 6 HOH A 183 683 187 HOH HOH . I 6 HOH A 184 684 188 HOH HOH . I 6 HOH A 185 685 189 HOH HOH . I 6 HOH A 186 686 190 HOH HOH . I 6 HOH A 187 687 191 HOH HOH . I 6 HOH A 188 688 192 HOH HOH . I 6 HOH A 189 689 193 HOH HOH . I 6 HOH A 190 690 195 HOH HOH . I 6 HOH A 191 691 196 HOH HOH . I 6 HOH A 192 692 197 HOH HOH . I 6 HOH A 193 693 198 HOH HOH . I 6 HOH A 194 694 199 HOH HOH . I 6 HOH A 195 695 200 HOH HOH . I 6 HOH A 196 696 201 HOH HOH . I 6 HOH A 197 697 202 HOH HOH . I 6 HOH A 198 698 203 HOH HOH . I 6 HOH A 199 699 204 HOH HOH . I 6 HOH A 200 700 205 HOH HOH . I 6 HOH A 201 701 206 HOH HOH . I 6 HOH A 202 702 207 HOH HOH . I 6 HOH A 203 703 208 HOH HOH . I 6 HOH A 204 704 209 HOH HOH . I 6 HOH A 205 705 210 HOH HOH . I 6 HOH A 206 706 212 HOH HOH . I 6 HOH A 207 707 213 HOH HOH . I 6 HOH A 208 708 214 HOH HOH . I 6 HOH A 209 709 215 HOH HOH . I 6 HOH A 210 710 216 HOH HOH . I 6 HOH A 211 711 217 HOH HOH . I 6 HOH A 212 712 218 HOH HOH . I 6 HOH A 213 713 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 22.245 -9.876 6.914 1 35.33 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 21.494 -9.514 5.756 1 33.05 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 23.632 -9.257 6.824 1 35.68 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 23.491 -7.824 6.857 1 36.45 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 24.499 -9.713 8.003 1 36.18 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 23.956 -9.185 9.202 1 37.48 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #