data_4FV4 # _model_server_result.job_id J-RzwszNkqz45qW5BzPxow _model_server_result.datetime_utc '2024-12-31 02:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4FV4 # _exptl.entry_id 4FV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FV4 _cell.length_a 44.19 _cell.length_b 70.45 _cell.length_c 120.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 160 A THR 158 1_555 A N CME 161 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C CME 161 A CME 159 1_555 A N ASP 162 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 196 n n C1 C2 GOL sing 197 n n C1 H11 GOL sing 198 n n C1 H12 GOL sing 199 n n O1 HO1 GOL sing 200 n n C2 O2 GOL sing 201 n n C2 C3 GOL sing 202 n n C2 H2 GOL sing 203 n n O2 HO2 GOL sing 204 n n C3 O3 GOL sing 205 n n C3 H31 GOL sing 206 n n C3 H32 GOL sing 207 n n O3 HO3 GOL sing 208 n n # _atom_sites.entry_id 4FV4 _atom_sites.fract_transf_matrix[1][1] 0.02263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EK7 A 1 401 1 EK7 EK7 . C 3 SO4 A 1 402 1 SO4 SO4 . D 3 SO4 A 1 403 2 SO4 SO4 . E 3 SO4 A 1 404 3 SO4 SO4 . F 4 GOL A 1 405 4 GOL GOL . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 4 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 6 HOH HOH . G 5 HOH A 7 507 7 HOH HOH . G 5 HOH A 8 508 8 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 10 HOH HOH . G 5 HOH A 11 511 11 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 13 HOH HOH . G 5 HOH A 14 514 14 HOH HOH . G 5 HOH A 15 515 15 HOH HOH . G 5 HOH A 16 516 16 HOH HOH . G 5 HOH A 17 517 17 HOH HOH . G 5 HOH A 18 518 18 HOH HOH . G 5 HOH A 19 519 19 HOH HOH . G 5 HOH A 20 520 20 HOH HOH . G 5 HOH A 21 521 21 HOH HOH . G 5 HOH A 22 522 22 HOH HOH . G 5 HOH A 23 523 23 HOH HOH . G 5 HOH A 24 524 24 HOH HOH . G 5 HOH A 25 525 25 HOH HOH . G 5 HOH A 26 526 26 HOH HOH . G 5 HOH A 27 527 27 HOH HOH . G 5 HOH A 28 528 28 HOH HOH . G 5 HOH A 29 529 29 HOH HOH . G 5 HOH A 30 530 30 HOH HOH . G 5 HOH A 31 531 31 HOH HOH . G 5 HOH A 32 532 32 HOH HOH . G 5 HOH A 33 533 33 HOH HOH . G 5 HOH A 34 534 34 HOH HOH . G 5 HOH A 35 535 35 HOH HOH . G 5 HOH A 36 536 36 HOH HOH . G 5 HOH A 37 537 37 HOH HOH . G 5 HOH A 38 538 38 HOH HOH . G 5 HOH A 39 539 39 HOH HOH . G 5 HOH A 40 540 40 HOH HOH . G 5 HOH A 41 541 41 HOH HOH . G 5 HOH A 42 542 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 7.536 12.027 12.878 1 48.9 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 4 7.034 10.77 13.351 1 48.05 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 4 8.103 11.829 11.468 1 48.68 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 4 9.51 11.562 11.514 1 49.57 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 4 7.868 13.057 10.602 1 48.68 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 4 8.179 12.681 9.264 1 48.72 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #