data_4FV5 # _model_server_result.job_id '_F94eJx_YjoojDm7xnwHIQ' _model_server_result.datetime_utc '2024-11-23 11:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 4FV5 # _exptl.entry_id 4FV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FV5 _cell.length_a 43.97 _cell.length_b 71.07 _cell.length_c 118.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 160 A THR 158 1_555 A N CME 161 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C CME 161 A CME 159 1_555 A N ASP 162 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 4FV5 _atom_sites.fract_transf_matrix[1][1] 0.022743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EK9 A 1 401 1 EK9 EK9 . C 3 SO4 A 1 402 1 SO4 SO4 . D 3 SO4 A 1 403 2 SO4 SO4 . E 3 SO4 A 1 404 3 SO4 SO4 . F 3 SO4 A 1 405 4 SO4 SO4 . G 3 SO4 A 1 406 5 SO4 SO4 . H 4 EDO A 1 407 6 EDO EDO . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 2 HOH HOH . I 5 HOH A 3 503 3 HOH HOH . I 5 HOH A 4 504 4 HOH HOH . I 5 HOH A 5 505 5 HOH HOH . I 5 HOH A 6 506 6 HOH HOH . I 5 HOH A 7 507 7 HOH HOH . I 5 HOH A 8 508 8 HOH HOH . I 5 HOH A 9 509 9 HOH HOH . I 5 HOH A 10 510 10 HOH HOH . I 5 HOH A 11 511 11 HOH HOH . I 5 HOH A 12 512 12 HOH HOH . I 5 HOH A 13 513 13 HOH HOH . I 5 HOH A 14 514 14 HOH HOH . I 5 HOH A 15 515 15 HOH HOH . I 5 HOH A 16 516 16 HOH HOH . I 5 HOH A 17 517 17 HOH HOH . I 5 HOH A 18 518 18 HOH HOH . I 5 HOH A 19 519 19 HOH HOH . I 5 HOH A 20 520 20 HOH HOH . I 5 HOH A 21 521 21 HOH HOH . I 5 HOH A 22 522 22 HOH HOH . I 5 HOH A 23 523 23 HOH HOH . I 5 HOH A 24 524 24 HOH HOH . I 5 HOH A 25 525 25 HOH HOH . I 5 HOH A 26 526 26 HOH HOH . I 5 HOH A 27 527 27 HOH HOH . I 5 HOH A 28 528 28 HOH HOH . I 5 HOH A 29 529 29 HOH HOH . I 5 HOH A 30 530 30 HOH HOH . I 5 HOH A 31 531 31 HOH HOH . I 5 HOH A 32 532 32 HOH HOH . I 5 HOH A 33 533 33 HOH HOH . I 5 HOH A 34 534 34 HOH HOH . I 5 HOH A 35 535 35 HOH HOH . I 5 HOH A 36 536 36 HOH HOH . I 5 HOH A 37 537 37 HOH HOH . I 5 HOH A 38 538 38 HOH HOH . I 5 HOH A 39 539 39 HOH HOH . I 5 HOH A 40 540 40 HOH HOH . I 5 HOH A 41 541 41 HOH HOH . I 5 HOH A 42 542 42 HOH HOH . I 5 HOH A 43 543 43 HOH HOH . I 5 HOH A 44 544 44 HOH HOH . I 5 HOH A 45 545 45 HOH HOH . I 5 HOH A 46 546 46 HOH HOH . I 5 HOH A 47 547 47 HOH HOH . I 5 HOH A 48 548 48 HOH HOH . I 5 HOH A 49 549 49 HOH HOH . I 5 HOH A 50 550 50 HOH HOH . I 5 HOH A 51 551 51 HOH HOH . I 5 HOH A 52 552 52 HOH HOH . I 5 HOH A 53 553 53 HOH HOH . I 5 HOH A 54 554 54 HOH HOH . I 5 HOH A 55 555 55 HOH HOH . I 5 HOH A 56 556 56 HOH HOH . I 5 HOH A 57 557 57 HOH HOH . I 5 HOH A 58 558 58 HOH HOH . I 5 HOH A 59 559 59 HOH HOH . I 5 HOH A 60 560 60 HOH HOH . I 5 HOH A 61 561 61 HOH HOH . I 5 HOH A 62 562 62 HOH HOH . I 5 HOH A 63 563 63 HOH HOH . I 5 HOH A 64 564 64 HOH HOH . I 5 HOH A 65 565 65 HOH HOH . I 5 HOH A 66 566 66 HOH HOH . I 5 HOH A 67 567 67 HOH HOH . I 5 HOH A 68 568 68 HOH HOH . I 5 HOH A 69 569 69 HOH HOH . I 5 HOH A 70 570 70 HOH HOH . I 5 HOH A 71 571 71 HOH HOH . I 5 HOH A 72 572 72 HOH HOH . I 5 HOH A 73 573 73 HOH HOH . I 5 HOH A 74 574 74 HOH HOH . I 5 HOH A 75 575 75 HOH HOH . I 5 HOH A 76 576 76 HOH HOH . I 5 HOH A 77 577 77 HOH HOH . I 5 HOH A 78 578 78 HOH HOH . I 5 HOH A 79 579 79 HOH HOH . I 5 HOH A 80 580 80 HOH HOH . I 5 HOH A 81 581 81 HOH HOH . I 5 HOH A 82 582 82 HOH HOH . I 5 HOH A 83 583 83 HOH HOH . I 5 HOH A 84 584 84 HOH HOH . I 5 HOH A 85 585 85 HOH HOH . I 5 HOH A 86 586 86 HOH HOH . I 5 HOH A 87 587 87 HOH HOH . I 5 HOH A 88 588 88 HOH HOH . I 5 HOH A 89 589 89 HOH HOH . I 5 HOH A 90 590 90 HOH HOH . I 5 HOH A 91 591 91 HOH HOH . I 5 HOH A 92 592 92 HOH HOH . I 5 HOH A 93 593 93 HOH HOH . I 5 HOH A 94 594 94 HOH HOH . I 5 HOH A 95 595 95 HOH HOH . I 5 HOH A 96 596 96 HOH HOH . I 5 HOH A 97 597 97 HOH HOH . I 5 HOH A 98 598 98 HOH HOH . I 5 HOH A 99 599 99 HOH HOH . I 5 HOH A 100 600 100 HOH HOH . I 5 HOH A 101 601 101 HOH HOH . I 5 HOH A 102 602 102 HOH HOH . I 5 HOH A 103 603 103 HOH HOH . I 5 HOH A 104 604 104 HOH HOH . I 5 HOH A 105 605 105 HOH HOH . I 5 HOH A 106 606 106 HOH HOH . I 5 HOH A 107 607 107 HOH HOH . I 5 HOH A 108 608 108 HOH HOH . I 5 HOH A 109 609 109 HOH HOH . I 5 HOH A 110 610 110 HOH HOH . I 5 HOH A 111 611 111 HOH HOH . I 5 HOH A 112 612 112 HOH HOH . I 5 HOH A 113 613 113 HOH HOH . I 5 HOH A 114 614 114 HOH HOH . I 5 HOH A 115 615 115 HOH HOH . I 5 HOH A 116 616 116 HOH HOH . I 5 HOH A 117 617 117 HOH HOH . I 5 HOH A 118 618 118 HOH HOH . I 5 HOH A 119 619 119 HOH HOH . I 5 HOH A 120 620 120 HOH HOH . I 5 HOH A 121 621 121 HOH HOH . I 5 HOH A 122 622 122 HOH HOH . I 5 HOH A 123 623 123 HOH HOH . I 5 HOH A 124 624 124 HOH HOH . I 5 HOH A 125 625 125 HOH HOH . I 5 HOH A 126 626 126 HOH HOH . I 5 HOH A 127 627 127 HOH HOH . I 5 HOH A 128 628 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 8.526 12.658 10.497 1 36.6 ? C1 EDO 407 A 1 HETATM 2 O O1 EDO . . . H 4 7.927 12.78 9.202 1 37.78 ? O1 EDO 407 A 1 HETATM 3 C C2 EDO . . . H 4 7.466 12.301 11.535 1 35.1 ? C2 EDO 407 A 1 HETATM 4 O O2 EDO . . . H 4 7.173 10.901 11.474 1 38.91 ? O2 EDO 407 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 4 #