data_4FVF
#
_model_server_result.job_id            AMohf5fH0MiYzmu_NqY5mQ 
_model_server_result.datetime_utc      '2024-11-05 04:08:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    4FVF 
#
_exptl.entry_id    4FVF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4FVF 
_cell.length_a            55.5 
_cell.length_b            55.5 
_cell.length_c            343.45 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 13 A THR 98 1_555 J CD CD . A CD 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc2 A OD1 ASP 81 A ASP 166 1_555 C CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc3 A OE2 GLU 83 A GLU 168 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc4 A OE1 GLU 84 A GLU 169 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc5 A ND1 HIS 87 A HIS 172 1_555 I CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc6 A ND1 HIS 88 A HIS 173 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc7 A OD2 ASP 95 A ASP 180 1_555 F CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc8 A OD1 ASP 95 A ASP 180 1_555 F CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc9 A OE2 GLU 108 A GLU 193 1_555 D CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc10 D CD CD . A CD 302 1_555 Q O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc11 E CD CD . A CD 303 1_555 Q O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc12 F CD CD . A CD 304 1_555 Q O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc13 H CD CD . A CD 306 1_555 Q O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc14 H CD CD . A CD 306 1_555 Q O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc15 H CD CD . A CD 306 1_555 Q O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc16 H CD CD . A CD 306 1_555 Q O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc17 I CD CD . A CD 307 1_555 Q O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc18 I CD CD . A CD 307 1_555 Q O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc19 J CD CD . A CD 308 1_555 L OXT ACT . A ACT 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc20 J CD CD . A CD 308 1_555 Q O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc21 J CD CD . A CD 308 1_555 Q O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc22 J CD CD . A CD 308 1_555 Q O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc23 B OD2 ASP 34 B ASP 119 1_555 P CD CD . B CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc24 B OE2 GLU 83 B GLU 168 1_555 M CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc25 B OD2 ASP 94 B ASP 179 1_555 N CD CD . B CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc26 B O ASP 95 B ASP 180 1_555 O CD CD . B CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc27 B OD2 ASP 98 B ASP 183 1_555 N CD CD . B CD 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc28 B OD1 ASP 98 B ASP 183 1_555 N CD CD . B CD 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc29 B OE2 GLU 108 B GLU 193 1_555 M CD CD . B CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc30 M CD CD . B CD 301 1_555 R O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc31 M CD CD . B CD 301 1_555 R O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc32 N CD CD . B CD 302 1_555 R O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc33 O CD CD . B CD 303 1_555 R O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4FVF 
_atom_sites.fract_transf_matrix[1][1]    0.018018 
_atom_sites.fract_transf_matrix[1][2]    0.010403 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020805 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 301 2 CD CD1 . 
D 2 CD A 1 302 3 CD CD1 . 
E 2 CD A 1 303 4 CD CD1 . 
F 2 CD A 1 304 5 CD CD1 . 
G 2 CD A 1 305 6 CD CD1 . 
H 2 CD A 1 306 7 CD CD1 . 
I 2 CD A 1 307 8 CD CD1 . 
J 2 CD A 1 308 11 CD CD1 . 
K 2 CD A 1 309 13 CD CD1 . 
L 3 ACT A 1 310 14 ACT ACT . 
M 2 CD B 1 301 1 CD CD1 . 
N 2 CD B 1 302 9 CD CD1 . 
O 2 CD B 1 303 10 CD CD1 . 
P 2 CD B 1 304 12 CD CD1 . 
Q 4 HOH A 1 401 1 HOH HOH . 
Q 4 HOH A 2 402 2 HOH HOH . 
Q 4 HOH A 3 403 3 HOH HOH . 
Q 4 HOH A 4 404 8 HOH HOH . 
Q 4 HOH A 5 405 9 HOH HOH . 
Q 4 HOH A 6 406 11 HOH HOH . 
Q 4 HOH A 7 407 12 HOH HOH . 
Q 4 HOH A 8 408 13 HOH HOH . 
Q 4 HOH A 9 409 14 HOH HOH . 
Q 4 HOH A 10 410 15 HOH HOH . 
Q 4 HOH A 11 411 16 HOH HOH . 
Q 4 HOH A 12 412 17 HOH HOH . 
Q 4 HOH A 13 413 18 HOH HOH . 
Q 4 HOH A 14 414 19 HOH HOH . 
Q 4 HOH A 15 415 20 HOH HOH . 
Q 4 HOH A 16 416 23 HOH HOH . 
Q 4 HOH A 17 417 25 HOH HOH . 
Q 4 HOH A 18 418 26 HOH HOH . 
Q 4 HOH A 19 419 28 HOH HOH . 
Q 4 HOH A 20 420 29 HOH HOH . 
Q 4 HOH A 21 421 30 HOH HOH . 
Q 4 HOH A 22 422 31 HOH HOH . 
Q 4 HOH A 23 423 32 HOH HOH . 
Q 4 HOH A 24 424 34 HOH HOH . 
Q 4 HOH A 25 425 35 HOH HOH . 
Q 4 HOH A 26 426 36 HOH HOH . 
Q 4 HOH A 27 427 37 HOH HOH . 
Q 4 HOH A 28 428 41 HOH HOH . 
Q 4 HOH A 29 429 42 HOH HOH . 
Q 4 HOH A 30 430 44 HOH HOH . 
Q 4 HOH A 31 431 47 HOH HOH . 
Q 4 HOH A 32 432 48 HOH HOH . 
Q 4 HOH A 33 433 49 HOH HOH . 
Q 4 HOH A 34 434 50 HOH HOH . 
Q 4 HOH A 35 435 51 HOH HOH . 
Q 4 HOH A 36 436 52 HOH HOH . 
Q 4 HOH A 37 437 53 HOH HOH . 
Q 4 HOH A 38 438 54 HOH HOH . 
Q 4 HOH A 39 439 55 HOH HOH . 
Q 4 HOH A 40 440 56 HOH HOH . 
Q 4 HOH A 41 441 58 HOH HOH . 
Q 4 HOH A 42 442 59 HOH HOH . 
Q 4 HOH A 43 443 60 HOH HOH . 
Q 4 HOH A 44 444 63 HOH HOH . 
Q 4 HOH A 45 445 64 HOH HOH . 
Q 4 HOH A 46 446 65 HOH HOH . 
Q 4 HOH A 47 447 66 HOH HOH . 
Q 4 HOH A 48 448 68 HOH HOH . 
Q 4 HOH A 49 449 70 HOH HOH . 
Q 4 HOH A 50 450 71 HOH HOH . 
Q 4 HOH A 51 451 74 HOH HOH . 
Q 4 HOH A 52 452 75 HOH HOH . 
Q 4 HOH A 53 453 76 HOH HOH . 
R 4 HOH B 1 401 4 HOH HOH . 
R 4 HOH B 2 402 5 HOH HOH . 
R 4 HOH B 3 403 6 HOH HOH . 
R 4 HOH B 4 404 7 HOH HOH . 
R 4 HOH B 5 405 10 HOH HOH . 
R 4 HOH B 6 406 21 HOH HOH . 
R 4 HOH B 7 407 22 HOH HOH . 
R 4 HOH B 8 408 24 HOH HOH . 
R 4 HOH B 9 409 27 HOH HOH . 
R 4 HOH B 10 410 33 HOH HOH . 
R 4 HOH B 11 411 38 HOH HOH . 
R 4 HOH B 12 412 39 HOH HOH . 
R 4 HOH B 13 413 40 HOH HOH . 
R 4 HOH B 14 414 43 HOH HOH . 
R 4 HOH B 15 415 45 HOH HOH . 
R 4 HOH B 16 416 46 HOH HOH . 
R 4 HOH B 17 417 57 HOH HOH . 
R 4 HOH B 18 418 61 HOH HOH . 
R 4 HOH B 19 419 62 HOH HOH . 
R 4 HOH B 20 420 67 HOH HOH . 
R 4 HOH B 21 421 69 HOH HOH . 
R 4 HOH B 22 422 72 HOH HOH . 
R 4 HOH B 23 423 73 HOH HOH . 
R 4 HOH B 24 424 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               17.007 
_atom_site.Cartn_y               5.839 
_atom_site.Cartn_z               32.239 
_atom_site.occupancy             0.9 
_atom_site.B_iso_or_equiv        44.12 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#