data_4FVQ # _model_server_result.job_id mQFgbby4UJyM4Dfm5KsuhQ _model_server_result.datetime_utc '2024-11-24 15:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4FVQ # _exptl.entry_id 4FVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.85 _cell.angle_gamma 90 _cell.entry_id 4FVQ _cell.length_a 44.632 _cell.length_b 57.548 _cell.length_c 60.967 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 143 A ASN 678 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 B O2A ATP . A ATP 901 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 B O3G ATP . A ATP 901 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 B O1B ATP . A ATP 901 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 C MG MG . A MG 902 1_555 F O HOH . A HOH 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 C MG MG . A MG 902 1_555 F O HOH . A HOH 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc7 C MG MG . A MG 902 1_555 F O HOH . A HOH 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 76 n n PG O2G ATP sing 77 n n PG O3G ATP sing 78 n n PG O3B ATP sing 79 n n O2G HOG2 ATP sing 80 n n O3G HOG3 ATP sing 81 n n PB O1B ATP doub 82 n n PB O2B ATP sing 83 n n PB O3B ATP sing 84 n n PB O3A ATP sing 85 n n O2B HOB2 ATP sing 86 n n PA O1A ATP doub 87 n n PA O2A ATP sing 88 n n PA O3A ATP sing 89 n n PA O5' ATP sing 90 n n O2A HOA2 ATP sing 91 n n O5' C5' ATP sing 92 n n C5' C4' ATP sing 93 n n C5' "H5'1" ATP sing 94 n n C5' "H5'2" ATP sing 95 n n C4' O4' ATP sing 96 n n C4' C3' ATP sing 97 n n C4' H4' ATP sing 98 n n O4' C1' ATP sing 99 n n C3' O3' ATP sing 100 n n C3' C2' ATP sing 101 n n C3' H3' ATP sing 102 n n O3' HO3' ATP sing 103 n n C2' O2' ATP sing 104 n n C2' C1' ATP sing 105 n n C2' H2' ATP sing 106 n n O2' HO2' ATP sing 107 n n C1' N9 ATP sing 108 n n C1' H1' ATP sing 109 n n N9 C8 ATP sing 110 n y N9 C4 ATP sing 111 n y C8 N7 ATP doub 112 n y C8 H8 ATP sing 113 n n N7 C5 ATP sing 114 n y C5 C6 ATP sing 115 n y C5 C4 ATP doub 116 n y C6 N6 ATP sing 117 n n C6 N1 ATP doub 118 n y N6 HN61 ATP sing 119 n n N6 HN62 ATP sing 120 n n N1 C2 ATP sing 121 n y C2 N3 ATP doub 122 n y C2 H2 ATP sing 123 n n N3 C4 ATP sing 124 n y # _atom_sites.entry_id 4FVQ _atom_sites.fract_transf_matrix[1][1] 0.022405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008534 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 901 1 ATP ATP . C 3 MG A 1 902 1 MG MG . D 4 ACT A 1 903 1 ACT ACT . E 4 ACT A 1 904 1 ACT ACT . F 5 HOH A 1 1001 1 HOH HOH . F 5 HOH A 2 1002 2 HOH HOH . F 5 HOH A 3 1003 3 HOH HOH . F 5 HOH A 4 1004 4 HOH HOH . F 5 HOH A 5 1005 5 HOH HOH . F 5 HOH A 6 1006 6 HOH HOH . F 5 HOH A 7 1007 7 HOH HOH . F 5 HOH A 8 1008 8 HOH HOH . F 5 HOH A 9 1009 9 HOH HOH . F 5 HOH A 10 1010 10 HOH HOH . F 5 HOH A 11 1011 11 HOH HOH . F 5 HOH A 12 1012 12 HOH HOH . F 5 HOH A 13 1013 13 HOH HOH . F 5 HOH A 14 1014 14 HOH HOH . F 5 HOH A 15 1015 15 HOH HOH . F 5 HOH A 16 1016 16 HOH HOH . F 5 HOH A 17 1017 17 HOH HOH . F 5 HOH A 18 1018 18 HOH HOH . F 5 HOH A 19 1019 19 HOH HOH . F 5 HOH A 20 1020 20 HOH HOH . F 5 HOH A 21 1021 21 HOH HOH . F 5 HOH A 22 1022 22 HOH HOH . F 5 HOH A 23 1023 23 HOH HOH . F 5 HOH A 24 1024 24 HOH HOH . F 5 HOH A 25 1025 25 HOH HOH . F 5 HOH A 26 1026 26 HOH HOH . F 5 HOH A 27 1027 27 HOH HOH . F 5 HOH A 28 1028 28 HOH HOH . F 5 HOH A 29 1029 29 HOH HOH . F 5 HOH A 30 1030 30 HOH HOH . F 5 HOH A 31 1031 31 HOH HOH . F 5 HOH A 32 1032 32 HOH HOH . F 5 HOH A 33 1033 33 HOH HOH . F 5 HOH A 34 1034 34 HOH HOH . F 5 HOH A 35 1035 35 HOH HOH . F 5 HOH A 36 1036 36 HOH HOH . F 5 HOH A 37 1037 37 HOH HOH . F 5 HOH A 38 1038 38 HOH HOH . F 5 HOH A 39 1039 39 HOH HOH . F 5 HOH A 40 1040 40 HOH HOH . F 5 HOH A 41 1041 41 HOH HOH . F 5 HOH A 42 1042 42 HOH HOH . F 5 HOH A 43 1043 43 HOH HOH . F 5 HOH A 44 1044 44 HOH HOH . F 5 HOH A 45 1045 45 HOH HOH . F 5 HOH A 46 1046 46 HOH HOH . F 5 HOH A 47 1047 47 HOH HOH . F 5 HOH A 48 1048 48 HOH HOH . F 5 HOH A 49 1049 49 HOH HOH . F 5 HOH A 50 1050 50 HOH HOH . F 5 HOH A 51 1051 51 HOH HOH . F 5 HOH A 52 1052 52 HOH HOH . F 5 HOH A 53 1053 53 HOH HOH . F 5 HOH A 54 1054 54 HOH HOH . F 5 HOH A 55 1055 55 HOH HOH . F 5 HOH A 56 1056 56 HOH HOH . F 5 HOH A 57 1057 57 HOH HOH . F 5 HOH A 58 1058 58 HOH HOH . F 5 HOH A 59 1059 59 HOH HOH . F 5 HOH A 60 1060 60 HOH HOH . F 5 HOH A 61 1061 61 HOH HOH . F 5 HOH A 62 1062 62 HOH HOH . F 5 HOH A 63 1063 63 HOH HOH . F 5 HOH A 64 1064 64 HOH HOH . F 5 HOH A 65 1065 65 HOH HOH . F 5 HOH A 66 1066 66 HOH HOH . F 5 HOH A 67 1067 67 HOH HOH . F 5 HOH A 68 1068 68 HOH HOH . F 5 HOH A 69 1069 69 HOH HOH . F 5 HOH A 70 1070 70 HOH HOH . F 5 HOH A 71 1071 71 HOH HOH . F 5 HOH A 72 1072 72 HOH HOH . F 5 HOH A 73 1073 73 HOH HOH . F 5 HOH A 74 1074 74 HOH HOH . F 5 HOH A 75 1075 75 HOH HOH . F 5 HOH A 76 1076 76 HOH HOH . F 5 HOH A 77 1077 77 HOH HOH . F 5 HOH A 78 1078 78 HOH HOH . F 5 HOH A 79 1079 79 HOH HOH . F 5 HOH A 80 1080 80 HOH HOH . F 5 HOH A 81 1081 81 HOH HOH . F 5 HOH A 82 1082 82 HOH HOH . F 5 HOH A 83 1083 83 HOH HOH . F 5 HOH A 84 1084 84 HOH HOH . F 5 HOH A 85 1085 85 HOH HOH . F 5 HOH A 86 1086 86 HOH HOH . F 5 HOH A 87 1087 87 HOH HOH . F 5 HOH A 88 1088 88 HOH HOH . F 5 HOH A 89 1089 89 HOH HOH . F 5 HOH A 90 1090 90 HOH HOH . F 5 HOH A 91 1091 91 HOH HOH . F 5 HOH A 92 1092 92 HOH HOH . F 5 HOH A 93 1093 93 HOH HOH . F 5 HOH A 94 1094 94 HOH HOH . F 5 HOH A 95 1095 95 HOH HOH . F 5 HOH A 96 1096 96 HOH HOH . F 5 HOH A 97 1097 97 HOH HOH . F 5 HOH A 98 1098 98 HOH HOH . F 5 HOH A 99 1099 99 HOH HOH . F 5 HOH A 100 1100 100 HOH HOH . F 5 HOH A 101 1101 101 HOH HOH . F 5 HOH A 102 1102 102 HOH HOH . F 5 HOH A 103 1103 103 HOH HOH . F 5 HOH A 104 1104 104 HOH HOH . F 5 HOH A 105 1105 105 HOH HOH . F 5 HOH A 106 1106 106 HOH HOH . F 5 HOH A 107 1107 107 HOH HOH . F 5 HOH A 108 1108 108 HOH HOH . F 5 HOH A 109 1109 109 HOH HOH . F 5 HOH A 110 1110 110 HOH HOH . F 5 HOH A 111 1111 111 HOH HOH . F 5 HOH A 112 1112 112 HOH HOH . F 5 HOH A 113 1113 113 HOH HOH . F 5 HOH A 114 1114 114 HOH HOH . F 5 HOH A 115 1115 115 HOH HOH . F 5 HOH A 116 1116 116 HOH HOH . F 5 HOH A 117 1117 117 HOH HOH . F 5 HOH A 118 1118 118 HOH HOH . F 5 HOH A 119 1119 119 HOH HOH . F 5 HOH A 120 1120 120 HOH HOH . F 5 HOH A 121 1121 121 HOH HOH . F 5 HOH A 122 1122 122 HOH HOH . F 5 HOH A 123 1123 123 HOH HOH . F 5 HOH A 124 1124 124 HOH HOH . F 5 HOH A 125 1125 125 HOH HOH . F 5 HOH A 126 1126 126 HOH HOH . F 5 HOH A 127 1127 127 HOH HOH . F 5 HOH A 128 1128 128 HOH HOH . F 5 HOH A 129 1129 129 HOH HOH . F 5 HOH A 130 1130 130 HOH HOH . F 5 HOH A 131 1131 131 HOH HOH . F 5 HOH A 132 1132 132 HOH HOH . F 5 HOH A 133 1133 133 HOH HOH . F 5 HOH A 134 1134 134 HOH HOH . F 5 HOH A 135 1135 135 HOH HOH . F 5 HOH A 136 1136 136 HOH HOH . F 5 HOH A 137 1137 137 HOH HOH . F 5 HOH A 138 1138 138 HOH HOH . F 5 HOH A 139 1139 139 HOH HOH . F 5 HOH A 140 1140 140 HOH HOH . F 5 HOH A 141 1141 141 HOH HOH . F 5 HOH A 142 1142 142 HOH HOH . F 5 HOH A 143 1143 143 HOH HOH . F 5 HOH A 144 1144 144 HOH HOH . F 5 HOH A 145 1145 145 HOH HOH . F 5 HOH A 146 1146 146 HOH HOH . F 5 HOH A 147 1147 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -1.226 7.688 22.003 1 25.91 ? PG ATP 901 A 1 HETATM 2 O O1G ATP . . . B 2 -1.388 6.342 22.632 1 29.29 ? O1G ATP 901 A 1 HETATM 3 O O2G ATP . . . B 2 0.173 8.165 21.786 1 24.76 ? O2G ATP 901 A 1 HETATM 4 O O3G ATP . . . B 2 -2.137 7.939 20.813 1 25.23 ? O3G ATP 901 A 1 HETATM 5 P PB ATP . . . B 2 -2.466 10.092 23.001 1 23.41 ? PB ATP 901 A 1 HETATM 6 O O1B ATP . . . B 2 -2.284 10.72 21.641 1 23.02 ? O1B ATP 901 A 1 HETATM 7 O O2B ATP . . . B 2 -1.959 10.963 24.125 1 26.33 ? O2B ATP 901 A 1 HETATM 8 O O3B ATP . . . B 2 -1.861 8.609 23.177 1 25.43 ? O3B ATP 901 A 1 HETATM 9 P PA ATP . . . B 2 -5.092 9.202 22.345 1 27.45 ? PA ATP 901 A 1 HETATM 10 O O1A ATP . . . B 2 -5.394 7.862 23 1 28.37 ? O1A ATP 901 A 1 HETATM 11 O O2A ATP . . . B 2 -4.571 9.289 20.929 1 26.46 ? O2A ATP 901 A 1 HETATM 12 O O3A ATP . . . B 2 -4.047 9.941 23.299 1 22.58 ? O3A ATP 901 A 1 HETATM 13 O O5' ATP . . . B 2 -6.355 10.143 22.52 1 22.54 ? O5' ATP 901 A 1 HETATM 14 C C5' ATP . . . B 2 -7.219 10.122 23.645 1 27.09 ? C5' ATP 901 A 1 HETATM 15 C C4' ATP . . . B 2 -8.574 10.636 23.18 1 27.41 ? C4' ATP 901 A 1 HETATM 16 O O4' ATP . . . B 2 -8.523 12.059 23.008 1 26.27 ? O4' ATP 901 A 1 HETATM 17 C C3' ATP . . . B 2 -8.942 10.086 21.795 1 29.1 ? C3' ATP 901 A 1 HETATM 18 O O3' ATP . . . B 2 -9.831 8.967 21.753 1 35.81 ? O3' ATP 901 A 1 HETATM 19 C C2' ATP . . . B 2 -9.588 11.204 21.028 1 28.14 ? C2' ATP 901 A 1 HETATM 20 O O2' ATP . . . B 2 -10.978 10.991 20.848 1 37.37 ? O2' ATP 901 A 1 HETATM 21 C C1' ATP . . . B 2 -9.286 12.447 21.851 1 25.08 ? C1' ATP 901 A 1 HETATM 22 N N9 ATP . . . B 2 -8.456 13.321 21.008 1 22.4 ? N9 ATP 901 A 1 HETATM 23 C C8 ATP . . . B 2 -7.142 13.158 20.821 1 21.39 ? C8 ATP 901 A 1 HETATM 24 N N7 ATP . . . B 2 -6.676 14.11 19.989 1 22.37 ? N7 ATP 901 A 1 HETATM 25 C C5 ATP . . . B 2 -7.729 14.875 19.652 1 21.47 ? C5 ATP 901 A 1 HETATM 26 C C6 ATP . . . B 2 -7.91 16.074 18.822 1 21.03 ? C6 ATP 901 A 1 HETATM 27 N N6 ATP . . . B 2 -6.834 16.602 18.216 1 21.16 ? N6 ATP 901 A 1 HETATM 28 N N1 ATP . . . B 2 -9.146 16.584 18.727 1 21.94 ? N1 ATP 901 A 1 HETATM 29 C C2 ATP . . . B 2 -10.22 16.038 19.348 1 21.55 ? C2 ATP 901 A 1 HETATM 30 N N3 ATP . . . B 2 -10.125 14.95 20.138 1 23.27 ? N3 ATP 901 A 1 HETATM 31 C C4 ATP . . . B 2 -8.911 14.352 20.31 1 20.68 ? C4 ATP 901 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #