data_4FVT # _model_server_result.job_id oMNa24fRc-SeNGcxDL6D-Q _model_server_result.datetime_utc '2024-12-04 17:49:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4FVT # _exptl.entry_id 4FVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 662.46 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FVT _cell.length_a 77.43 _cell.length_b 131.05 _cell.length_c 77.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 2 B GLY 4 1_555 B N ALY 3 B ALY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 B C ALY 3 B ALY 5 1_555 B N VAL 4 B VAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C VAL 4 B VAL 6 1_555 B N NLE 5 B NLE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 135 A CYS 256 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 A SG CYS 138 A CYS 259 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 A SG CYS 159 A CYS 280 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 A SG CYS 162 A CYS 283 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'C22 H30 N7 O13 P2 1' _chem_comp.formula_weight 662.46 _chem_comp.id CNA _chem_comp.mon_nstd_flag . _chem_comp.name CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3B C3B CNA sing 98 n n O2B C2B CNA sing 99 n n C3B C2B CNA sing 100 n n C3B C4B CNA sing 101 n n C2B C1B CNA sing 102 n n N3A C2A CNA doub 103 n y N3A C4A CNA sing 104 n y C2A N1A CNA sing 105 n y C1B N9A CNA sing 106 n n C1B O4B CNA sing 107 n n C4B O4B CNA sing 108 n n C4B C5B CNA sing 109 n n C4A N9A CNA sing 110 n y C4A C5A CNA doub 111 n y N9A C8A CNA sing 112 n y N1A C6A CNA doub 113 n y O2A PA CNA doub 114 n n O5B C5B CNA sing 115 n n O5B PA CNA sing 116 n n C5A C6A CNA sing 117 n y C5A N7A CNA sing 118 n y C6A N6A CNA sing 119 n n C8A N7A CNA doub 120 n y PA O3 CNA sing 121 n n PA O1A CNA sing 122 n n O3 PN CNA sing 123 n n O1N PN CNA doub 124 n n PN O2N CNA sing 125 n n PN O5D CNA sing 126 n n C5D O5D CNA sing 127 n n C5D C4D CNA sing 128 n n C3D O3D CNA sing 129 n n C3D C4D CNA sing 130 n n C3D C2D CNA sing 131 n n C4D C4' CNA sing 132 n n O2D C2D CNA sing 133 n n C2D C1D CNA sing 134 n n C4' C1D CNA sing 135 n n C1D N1N CNA sing 136 n n N1N C6N CNA doub 137 n y N1N C2N CNA sing 138 n y C6N C5N CNA sing 139 n y C2N C3N CNA doub 140 n y C5N C4N CNA doub 141 n y C3N C4N CNA sing 142 n y C3N C7N CNA sing 143 n n N7N C7N CNA sing 144 n n C7N O7N CNA doub 145 n n O1A H1 CNA sing 146 n n C5B H2 CNA sing 147 n n C5B H3 CNA sing 148 n n C4B H4 CNA sing 149 n n C3B H5 CNA sing 150 n n O3B H6 CNA sing 151 n n C2B H7 CNA sing 152 n n O2B H8 CNA sing 153 n n C1B H9 CNA sing 154 n n C8A H10 CNA sing 155 n n N6A H11 CNA sing 156 n n N6A H12 CNA sing 157 n n C2A H13 CNA sing 158 n n O2N H14 CNA sing 159 n n C5D H15 CNA sing 160 n n C5D H16 CNA sing 161 n n C4D H17 CNA sing 162 n n C4' H18 CNA sing 163 n n C4' H19 CNA sing 164 n n C3D H20 CNA sing 165 n n O3D H21 CNA sing 166 n n C2D H22 CNA sing 167 n n O2D H23 CNA sing 168 n n C1D H24 CNA sing 169 n n C2N H25 CNA sing 170 n n N7N H26 CNA sing 171 n n N7N H27 CNA sing 172 n n C4N H28 CNA sing 173 n n C5N H29 CNA sing 174 n n C6N H30 CNA sing 175 n n # _atom_sites.entry_id 4FVT _atom_sites.fract_transf_matrix[1][1] 0.012915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CNA A 1 401 1 CNA CNA . D 4 SO4 A 1 402 1 SO4 SO4 . E 4 SO4 A 1 403 2 SO4 SO4 . F 4 SO4 A 1 404 3 SO4 SO4 . G 5 ZN A 1 405 1 ZN ZN . H 6 GOL A 1 406 1 GOL GOL . I 7 HOH A 1 501 1 HOH HOH . I 7 HOH A 2 502 2 HOH HOH . I 7 HOH A 3 503 3 HOH HOH . I 7 HOH A 4 504 4 HOH HOH . I 7 HOH A 5 505 5 HOH HOH . I 7 HOH A 6 506 6 HOH HOH . I 7 HOH A 7 507 7 HOH HOH . I 7 HOH A 8 508 8 HOH HOH . I 7 HOH A 9 509 9 HOH HOH . I 7 HOH A 10 510 10 HOH HOH . I 7 HOH A 11 511 11 HOH HOH . I 7 HOH A 12 512 12 HOH HOH . I 7 HOH A 13 513 13 HOH HOH . I 7 HOH A 14 514 14 HOH HOH . I 7 HOH A 15 515 15 HOH HOH . I 7 HOH A 16 516 16 HOH HOH . I 7 HOH A 17 517 17 HOH HOH . I 7 HOH A 18 518 18 HOH HOH . I 7 HOH A 19 519 19 HOH HOH . I 7 HOH A 20 520 20 HOH HOH . I 7 HOH A 21 521 21 HOH HOH . I 7 HOH A 22 522 22 HOH HOH . I 7 HOH A 23 523 23 HOH HOH . I 7 HOH A 24 524 24 HOH HOH . I 7 HOH A 25 525 25 HOH HOH . I 7 HOH A 26 526 26 HOH HOH . I 7 HOH A 27 527 27 HOH HOH . I 7 HOH A 28 528 28 HOH HOH . I 7 HOH A 29 529 29 HOH HOH . I 7 HOH A 30 530 30 HOH HOH . I 7 HOH A 31 531 31 HOH HOH . I 7 HOH A 32 532 32 HOH HOH . I 7 HOH A 33 533 33 HOH HOH . I 7 HOH A 34 534 34 HOH HOH . I 7 HOH A 35 535 35 HOH HOH . I 7 HOH A 36 536 36 HOH HOH . I 7 HOH A 37 537 37 HOH HOH . I 7 HOH A 38 538 38 HOH HOH . I 7 HOH A 39 539 39 HOH HOH . I 7 HOH A 40 540 40 HOH HOH . I 7 HOH A 41 541 41 HOH HOH . I 7 HOH A 42 542 42 HOH HOH . I 7 HOH A 43 543 43 HOH HOH . I 7 HOH A 44 544 44 HOH HOH . I 7 HOH A 45 545 45 HOH HOH . I 7 HOH A 46 546 46 HOH HOH . I 7 HOH A 47 547 47 HOH HOH . I 7 HOH A 48 548 48 HOH HOH . I 7 HOH A 49 549 49 HOH HOH . I 7 HOH A 50 550 50 HOH HOH . I 7 HOH A 51 551 51 HOH HOH . I 7 HOH A 52 552 52 HOH HOH . I 7 HOH A 53 553 53 HOH HOH . I 7 HOH A 54 554 54 HOH HOH . I 7 HOH A 55 555 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA CNA . . . C 3 16.722 28.45 -15.285 1 77.01 ? PA CNA 401 A 1 HETATM 2 O O1A CNA . . . C 3 17.212 28.595 -16.829 1 87.04 ? O1A CNA 401 A 1 HETATM 3 O O2A CNA . . . C 3 16.264 29.745 -14.705 1 81.43 ? O2A CNA 401 A 1 HETATM 4 O O5B CNA . . . C 3 15.633 27.247 -15.247 1 76.37 ? O5B CNA 401 A 1 HETATM 5 C C5B CNA . . . C 3 14.77 27.005 -14.117 1 74.37 ? C5B CNA 401 A 1 HETATM 6 C C4B CNA . . . C 3 13.665 26.002 -14.541 1 75.55 ? C4B CNA 401 A 1 HETATM 7 O O4B CNA . . . C 3 12.895 25.44 -13.417 1 75.31 ? O4B CNA 401 A 1 HETATM 8 C C3B CNA . . . C 3 12.622 26.682 -15.425 1 76.19 ? C3B CNA 401 A 1 HETATM 9 O O3B CNA . . . C 3 11.92 25.657 -16.166 1 73.26 ? O3B CNA 401 A 1 HETATM 10 C C2B CNA . . . C 3 11.729 27.311 -14.353 1 78.92 ? C2B CNA 401 A 1 HETATM 11 O O2B CNA . . . C 3 10.428 27.656 -14.863 1 75.17 ? O2B CNA 401 A 1 HETATM 12 C C1B CNA . . . C 3 11.604 26.139 -13.382 1 78.95 ? C1B CNA 401 A 1 HETATM 13 N N9A CNA . . . C 3 11.29 26.555 -11.971 1 79.62 ? N9A CNA 401 A 1 HETATM 14 C C8A CNA . . . C 3 11.677 27.643 -11.296 1 75.01 ? C8A CNA 401 A 1 HETATM 15 N N7A CNA . . . C 3 11.163 27.573 -10.06 1 74.15 ? N7A CNA 401 A 1 HETATM 16 C C5A CNA . . . C 3 10.466 26.432 -9.968 1 74.91 ? C5A CNA 401 A 1 HETATM 17 C C6A CNA . . . C 3 9.77 25.898 -8.96 1 69.65 ? C6A CNA 401 A 1 HETATM 18 N N6A CNA . . . C 3 9.748 26.597 -7.829 1 64.82 ? N6A CNA 401 A 1 HETATM 19 N N1A CNA . . . C 3 9.126 24.726 -9.087 1 69.93 ? N1A CNA 401 A 1 HETATM 20 C C2A CNA . . . C 3 9.2 24.042 -10.31 1 71.89 ? C2A CNA 401 A 1 HETATM 21 N N3A CNA . . . C 3 9.937 24.612 -11.353 1 73.06 ? N3A CNA 401 A 1 HETATM 22 C C4A CNA . . . C 3 10.548 25.799 -11.153 1 76.9 ? C4A CNA 401 A 1 HETATM 23 O O3 CNA . . . C 3 18.022 27.877 -14.477 1 79.31 ? O3 CNA 401 A 1 HETATM 24 P PN CNA . . . C 3 18.862 26.598 -14.986 1 68.89 ? PN CNA 401 A 1 HETATM 25 O O1N CNA . . . C 3 19.646 26.109 -13.685 1 64.01 ? O1N CNA 401 A 1 HETATM 26 O O2N CNA . . . C 3 18.044 25.508 -15.584 1 72.8 ? O2N CNA 401 A 1 HETATM 27 O O5D CNA . . . C 3 20.058 27.147 -16 1 77.71 ? O5D CNA 401 A 1 HETATM 28 C C5D CNA . . . C 3 21.372 27.441 -15.476 1 70.83 ? C5D CNA 401 A 1 HETATM 29 C C4D CNA . . . C 3 21.649 28.961 -15.418 1 73.71 ? C4D CNA 401 A 1 HETATM 30 C C4' CNA . . . C 3 20.776 29.721 -14.373 1 70.09 ? C4' CNA 401 A 1 HETATM 31 C C3D CNA . . . C 3 23.113 29.191 -14.985 1 75.75 ? C3D CNA 401 A 1 HETATM 32 O O3D CNA . . . C 3 23.723 30.229 -15.827 1 74.85 ? O3D CNA 401 A 1 HETATM 33 C C2D CNA . . . C 3 22.999 29.63 -13.505 1 76.55 ? C2D CNA 401 A 1 HETATM 34 O O2D CNA . . . C 3 24.179 30.308 -13.039 1 68.27 ? O2D CNA 401 A 1 HETATM 35 C C1D CNA . . . C 3 21.789 30.568 -13.559 1 76.19 ? C1D CNA 401 A 1 HETATM 36 N N1N CNA . . . C 3 21.249 30.874 -12.208 1 78.33 ? N1N CNA 401 A 1 HETATM 37 C C2N CNA . . . C 3 21.716 30.192 -11.054 1 72.81 ? C2N CNA 401 A 1 HETATM 38 C C3N CNA . . . C 3 21.168 30.496 -9.794 1 76.37 ? C3N CNA 401 A 1 HETATM 39 C C7N CNA . . . C 3 21.594 29.841 -8.624 1 66.1 ? C7N CNA 401 A 1 HETATM 40 O O7N CNA . . . C 3 22.741 29.407 -8.502 1 61.09 ? O7N CNA 401 A 1 HETATM 41 N N7N CNA . . . C 3 20.655 29.722 -7.671 1 62.63 ? N7N CNA 401 A 1 HETATM 42 C C4N CNA . . . C 3 20.149 31.45 -9.695 1 74.16 ? C4N CNA 401 A 1 HETATM 43 C C5N CNA . . . C 3 19.677 32.12 -10.823 1 76.15 ? C5N CNA 401 A 1 HETATM 44 C C6N CNA . . . C 3 20.22 31.835 -12.077 1 78.3 ? C6N CNA 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #