data_4FVT # _model_server_result.job_id waJKRW-VcdrLPtQwZe071w _model_server_result.datetime_utc '2024-10-11 01:20:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 4FVT # _exptl.entry_id 4FVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FVT _cell.length_a 77.43 _cell.length_b 131.05 _cell.length_c 77.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 2 B GLY 4 1_555 B N ALY 3 B ALY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 B C ALY 3 B ALY 5 1_555 B N VAL 4 B VAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C VAL 4 B VAL 6 1_555 B N NLE 5 B NLE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 138 A CYS 259 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A SG CYS 159 A CYS 280 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A SG CYS 162 A CYS 283 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A SG CYS 135 A CYS 256 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4FVT _atom_sites.fract_transf_matrix[1][1] 0.012915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CNA A 1 401 1 CNA CNA . D 4 SO4 A 1 402 1 SO4 SO4 . E 4 SO4 A 1 403 2 SO4 SO4 . F 4 SO4 A 1 404 3 SO4 SO4 . G 5 ZN A 1 405 1 ZN ZN . H 6 GOL A 1 406 1 GOL GOL . I 7 HOH A 1 501 1 HOH HOH . I 7 HOH A 2 502 2 HOH HOH . I 7 HOH A 3 503 3 HOH HOH . I 7 HOH A 4 504 4 HOH HOH . I 7 HOH A 5 505 5 HOH HOH . I 7 HOH A 6 506 6 HOH HOH . I 7 HOH A 7 507 7 HOH HOH . I 7 HOH A 8 508 8 HOH HOH . I 7 HOH A 9 509 9 HOH HOH . I 7 HOH A 10 510 10 HOH HOH . I 7 HOH A 11 511 11 HOH HOH . I 7 HOH A 12 512 12 HOH HOH . I 7 HOH A 13 513 13 HOH HOH . I 7 HOH A 14 514 14 HOH HOH . I 7 HOH A 15 515 15 HOH HOH . I 7 HOH A 16 516 16 HOH HOH . I 7 HOH A 17 517 17 HOH HOH . I 7 HOH A 18 518 18 HOH HOH . I 7 HOH A 19 519 19 HOH HOH . I 7 HOH A 20 520 20 HOH HOH . I 7 HOH A 21 521 21 HOH HOH . I 7 HOH A 22 522 22 HOH HOH . I 7 HOH A 23 523 23 HOH HOH . I 7 HOH A 24 524 24 HOH HOH . I 7 HOH A 25 525 25 HOH HOH . I 7 HOH A 26 526 26 HOH HOH . I 7 HOH A 27 527 27 HOH HOH . I 7 HOH A 28 528 28 HOH HOH . I 7 HOH A 29 529 29 HOH HOH . I 7 HOH A 30 530 30 HOH HOH . I 7 HOH A 31 531 31 HOH HOH . I 7 HOH A 32 532 32 HOH HOH . I 7 HOH A 33 533 33 HOH HOH . I 7 HOH A 34 534 34 HOH HOH . I 7 HOH A 35 535 35 HOH HOH . I 7 HOH A 36 536 36 HOH HOH . I 7 HOH A 37 537 37 HOH HOH . I 7 HOH A 38 538 38 HOH HOH . I 7 HOH A 39 539 39 HOH HOH . I 7 HOH A 40 540 40 HOH HOH . I 7 HOH A 41 541 41 HOH HOH . I 7 HOH A 42 542 42 HOH HOH . I 7 HOH A 43 543 43 HOH HOH . I 7 HOH A 44 544 44 HOH HOH . I 7 HOH A 45 545 45 HOH HOH . I 7 HOH A 46 546 46 HOH HOH . I 7 HOH A 47 547 47 HOH HOH . I 7 HOH A 48 548 48 HOH HOH . I 7 HOH A 49 549 49 HOH HOH . I 7 HOH A 50 550 50 HOH HOH . I 7 HOH A 51 551 51 HOH HOH . I 7 HOH A 52 552 52 HOH HOH . I 7 HOH A 53 553 53 HOH HOH . I 7 HOH A 54 554 54 HOH HOH . I 7 HOH A 55 555 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 6 28.067 5.852 -1.553 1 85.66 ? C1 GOL 406 A 1 HETATM 2 O O1 GOL . . . H 6 27.642 6.142 -0.225 1 77.67 ? O1 GOL 406 A 1 HETATM 3 C C2 GOL . . . H 6 27.047 5.023 -2.316 1 84.46 ? C2 GOL 406 A 1 HETATM 4 O O2 GOL . . . H 6 25.757 5.227 -1.802 1 75.32 ? O2 GOL 406 A 1 HETATM 5 C C3 GOL . . . H 6 27.116 5.305 -3.827 1 81.45 ? C3 GOL 406 A 1 HETATM 6 O O3 GOL . . . H 6 26.096 4.602 -4.582 1 77.11 ? O3 GOL 406 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #