data_4FWM # _model_server_result.job_id lDUt6ww6wUuxlHfny58F2Q _model_server_result.datetime_utc '2024-12-04 17:03:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4FWM # _exptl.entry_id 4FWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FWM _cell.length_a 111.435 _cell.length_b 111.435 _cell.length_c 66.753 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -22.251 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4FWM _atom_sites.fract_transf_matrix[1][1] 0.008974 _atom_sites.fract_transf_matrix[1][2] 0.005181 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 401 EDO EDO . C 2 EDO A 1 402 402 EDO EDO . D 2 EDO A 1 403 403 EDO EDO . E 2 EDO A 1 404 404 EDO EDO . F 3 ATP A 1 405 501 ATP ATP . G 4 HOH A 1 501 1 HOH HOH . G 4 HOH A 2 502 2 HOH HOH . G 4 HOH A 3 503 3 HOH HOH . G 4 HOH A 4 504 4 HOH HOH . G 4 HOH A 5 505 5 HOH HOH . G 4 HOH A 6 506 6 HOH HOH . G 4 HOH A 7 507 7 HOH HOH . G 4 HOH A 8 508 8 HOH HOH . G 4 HOH A 9 509 9 HOH HOH . G 4 HOH A 10 510 10 HOH HOH . G 4 HOH A 11 511 11 HOH HOH . G 4 HOH A 12 512 12 HOH HOH . G 4 HOH A 13 513 13 HOH HOH . G 4 HOH A 14 514 14 HOH HOH . G 4 HOH A 15 515 15 HOH HOH . G 4 HOH A 16 516 16 HOH HOH . G 4 HOH A 17 517 17 HOH HOH . G 4 HOH A 18 518 18 HOH HOH . G 4 HOH A 19 519 19 HOH HOH . G 4 HOH A 20 520 20 HOH HOH . G 4 HOH A 21 521 21 HOH HOH . G 4 HOH A 22 522 22 HOH HOH . G 4 HOH A 23 523 23 HOH HOH . G 4 HOH A 24 524 24 HOH HOH . G 4 HOH A 25 525 25 HOH HOH . G 4 HOH A 26 526 26 HOH HOH . G 4 HOH A 27 527 27 HOH HOH . G 4 HOH A 28 528 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 3 44.229 9.692 6.781 1 104.51 ? PG ATP 405 A 1 HETATM 2 O O1G ATP . . . F 3 44.25 9.182 5.36 1 104.34 ? O1G ATP 405 A 1 HETATM 3 O O2G ATP . . . F 3 45.605 9.923 7.369 1 104.35 ? O2G ATP 405 A 1 HETATM 4 O O3G ATP . . . F 3 43.244 10.821 7.011 1 104.31 ? O3G ATP 405 A 1 HETATM 5 P PB ATP . . . F 3 43.363 8.46 9.205 1 102.96 ? PB ATP 405 A 1 HETATM 6 O O1B ATP . . . F 3 41.932 8.031 9.441 1 102.73 ? O1B ATP 405 A 1 HETATM 7 O O2B ATP . . . F 3 43.843 9.774 9.782 1 102.89 ? O2B ATP 405 A 1 HETATM 8 O O3B ATP . . . F 3 43.634 8.435 7.61 1 103.62 ? O3B ATP 405 A 1 HETATM 9 P PA ATP . . . F 3 45.673 7.595 10.568 1 100.18 ? PA ATP 405 A 1 HETATM 10 O O1A ATP . . . F 3 45.288 8.252 11.875 1 100.09 ? O1A ATP 405 A 1 HETATM 11 O O2A ATP . . . F 3 46.654 8.265 9.634 1 99.94 ? O2A ATP 405 A 1 HETATM 12 O O3A ATP . . . F 3 44.326 7.282 9.74 1 101.56 ? O3A ATP 405 A 1 HETATM 13 O O5' ATP . . . F 3 46.238 6.126 10.887 1 99.49 ? O5' ATP 405 A 1 HETATM 14 C C5' ATP . . . F 3 45.415 5.134 11.491 1 98.83 ? C5' ATP 405 A 1 HETATM 15 C C4' ATP . . . F 3 45.932 3.763 11.078 1 98.34 ? C4' ATP 405 A 1 HETATM 16 O O4' ATP . . . F 3 47.287 3.596 11.513 1 97.99 ? O4' ATP 405 A 1 HETATM 17 C C3' ATP . . . F 3 45.113 2.645 11.702 1 98.08 ? C3' ATP 405 A 1 HETATM 18 O O3' ATP . . . F 3 44.673 1.761 10.666 1 97.99 ? O3' ATP 405 A 1 HETATM 19 C C2' ATP . . . F 3 46.064 1.934 12.644 1 97.92 ? C2' ATP 405 A 1 HETATM 20 O O2' ATP . . . F 3 45.892 0.516 12.599 1 98.25 ? O2' ATP 405 A 1 HETATM 21 C C1' ATP . . . F 3 47.444 2.323 12.141 1 97.62 ? C1' ATP 405 A 1 HETATM 22 N N9 ATP . . . F 3 48.433 2.371 13.249 1 97.18 ? N9 ATP 405 A 1 HETATM 23 C C8 ATP . . . F 3 48.534 3.329 14.19 1 96.95 ? C8 ATP 405 A 1 HETATM 24 N N7 ATP . . . F 3 49.547 3.062 15.053 1 96.9 ? N7 ATP 405 A 1 HETATM 25 C C5 ATP . . . F 3 50.119 1.906 14.667 1 97.14 ? C5 ATP 405 A 1 HETATM 26 C C6 ATP . . . F 3 51.243 1.047 15.133 1 97.23 ? C6 ATP 405 A 1 HETATM 27 N N6 ATP . . . F 3 51.98 1.386 16.221 1 97.04 ? N6 ATP 405 A 1 HETATM 28 N N1 ATP . . . F 3 51.513 -0.085 14.433 1 97.18 ? N1 ATP 405 A 1 HETATM 29 C C2 ATP . . . F 3 50.791 -0.439 13.349 1 97.01 ? C2 ATP 405 A 1 HETATM 30 N N3 ATP . . . F 3 49.761 0.291 12.874 1 97.15 ? N3 ATP 405 A 1 HETATM 31 C C4 ATP . . . F 3 49.38 1.453 13.473 1 97.17 ? C4 ATP 405 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 1172 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #