data_4FWO # _model_server_result.job_id bZu2SOWhWa4Fuat-DljcHQ _model_server_result.datetime_utc '2024-11-23 00:59:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4FWO # _exptl.entry_id 4FWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FWO _cell.length_a 110.921 _cell.length_b 110.921 _cell.length_c 66.789 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 44.526 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 4FWO _atom_sites.fract_transf_matrix[1][1] 0.009015 _atom_sites.fract_transf_matrix[1][2] 0.005205 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 401 EDO EDO . C 2 EDO A 1 502 402 EDO EDO . D 2 EDO A 1 503 403 EDO EDO . E 3 5GP A 1 504 501 5GP 5GP . F 4 HOH A 1 601 1 HOH HOH . F 4 HOH A 2 602 2 HOH HOH . F 4 HOH A 3 603 3 HOH HOH . F 4 HOH A 4 604 4 HOH HOH . F 4 HOH A 5 605 5 HOH HOH . F 4 HOH A 6 606 6 HOH HOH . F 4 HOH A 7 607 7 HOH HOH . F 4 HOH A 8 608 8 HOH HOH . F 4 HOH A 9 609 9 HOH HOH . F 4 HOH A 10 610 10 HOH HOH . F 4 HOH A 11 611 11 HOH HOH . F 4 HOH A 12 612 12 HOH HOH . F 4 HOH A 13 613 13 HOH HOH . F 4 HOH A 14 614 14 HOH HOH . F 4 HOH A 15 615 15 HOH HOH . F 4 HOH A 16 616 16 HOH HOH . F 4 HOH A 17 617 17 HOH HOH . F 4 HOH A 18 618 18 HOH HOH . F 4 HOH A 19 619 19 HOH HOH . F 4 HOH A 20 620 20 HOH HOH . F 4 HOH A 21 621 21 HOH HOH . F 4 HOH A 22 622 22 HOH HOH . F 4 HOH A 23 623 23 HOH HOH . F 4 HOH A 24 624 24 HOH HOH . F 4 HOH A 25 625 25 HOH HOH . F 4 HOH A 26 626 26 HOH HOH . F 4 HOH A 27 627 27 HOH HOH . F 4 HOH A 28 628 28 HOH HOH . F 4 HOH A 29 629 29 HOH HOH . F 4 HOH A 30 630 30 HOH HOH . F 4 HOH A 31 631 31 HOH HOH . F 4 HOH A 32 632 32 HOH HOH . F 4 HOH A 33 633 33 HOH HOH . F 4 HOH A 34 634 34 HOH HOH . F 4 HOH A 35 635 35 HOH HOH . F 4 HOH A 36 636 36 HOH HOH . F 4 HOH A 37 637 37 HOH HOH . F 4 HOH A 38 638 38 HOH HOH . F 4 HOH A 39 639 39 HOH HOH . F 4 HOH A 40 640 40 HOH HOH . F 4 HOH A 41 641 41 HOH HOH . F 4 HOH A 42 642 42 HOH HOH . F 4 HOH A 43 643 43 HOH HOH . F 4 HOH A 44 644 44 HOH HOH . F 4 HOH A 45 645 45 HOH HOH . F 4 HOH A 46 646 46 HOH HOH . F 4 HOH A 47 647 47 HOH HOH . F 4 HOH A 48 648 48 HOH HOH . F 4 HOH A 49 649 49 HOH HOH . F 4 HOH A 50 650 50 HOH HOH . F 4 HOH A 51 651 51 HOH HOH . F 4 HOH A 52 652 52 HOH HOH . F 4 HOH A 53 653 53 HOH HOH . F 4 HOH A 54 654 54 HOH HOH . F 4 HOH A 55 655 55 HOH HOH . F 4 HOH A 56 656 56 HOH HOH . F 4 HOH A 57 657 57 HOH HOH . F 4 HOH A 58 658 58 HOH HOH . F 4 HOH A 59 659 59 HOH HOH . F 4 HOH A 60 660 60 HOH HOH . F 4 HOH A 61 661 61 HOH HOH . F 4 HOH A 62 662 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . E 3 45.164 -7.518 0.337 1 85.12 ? P 5GP 504 A 1 HETATM 2 O O1P 5GP . . . E 3 43.717 -7.928 0.209 1 85.12 ? O1P 5GP 504 A 1 HETATM 3 O O2P 5GP . . . E 3 45.952 -7.973 -0.868 1 85.06 ? O2P 5GP 504 A 1 HETATM 4 O O3P 5GP . . . E 3 45.804 -8.1 1.695 1 85.25 ? O3P 5GP 504 A 1 HETATM 5 O O5' 5GP . . . E 3 45.285 -5.925 0.517 1 85.34 ? O5' 5GP 504 A 1 HETATM 6 C C5' 5GP . . . E 3 44.78 -5.049 -0.487 1 85.64 ? C5' 5GP 504 A 1 HETATM 7 C C4' 5GP . . . E 3 45.317 -3.648 -0.231 1 85.77 ? C4' 5GP 504 A 1 HETATM 8 O O4' 5GP . . . E 3 46.672 -3.557 -0.679 1 85.87 ? O4' 5GP 504 A 1 HETATM 9 C C3' 5GP . . . E 3 44.512 -2.597 -0.978 1 85.76 ? C3' 5GP 504 A 1 HETATM 10 O O3' 5GP . . . E 3 43.817 -1.772 -0.037 1 85.78 ? O3' 5GP 504 A 1 HETATM 11 C C2' 5GP . . . E 3 45.519 -1.791 -1.782 1 85.85 ? C2' 5GP 504 A 1 HETATM 12 O O2' 5GP . . . E 3 45.44 -0.389 -1.491 1 85.93 ? O2' 5GP 504 A 1 HETATM 13 C C1' 5GP . . . E 3 46.886 -2.33 -1.383 1 85.83 ? C1' 5GP 504 A 1 HETATM 14 N N9 5GP . . . E 3 47.73 -2.544 -2.587 1 85.65 ? N9 5GP 504 A 1 HETATM 15 C C8 5GP . . . E 3 47.64 -3.569 -3.458 1 85.55 ? C8 5GP 504 A 1 HETATM 16 N N7 5GP . . . E 3 48.563 -3.453 -4.449 1 85.63 ? N7 5GP 504 A 1 HETATM 17 C C5 5GP . . . E 3 49.268 -2.329 -4.215 1 85.7 ? C5 5GP 504 A 1 HETATM 18 C C6 5GP . . . E 3 50.394 -1.609 -4.868 1 85.72 ? C6 5GP 504 A 1 HETATM 19 O O6 5GP . . . E 3 50.92 -2.05 -5.915 1 85.59 ? O6 5GP 504 A 1 HETATM 20 N N1 5GP . . . E 3 50.832 -0.471 -4.299 1 85.53 ? N1 5GP 504 A 1 HETATM 21 C C2 5GP . . . E 3 50.286 0.031 -3.17 1 85.31 ? C2 5GP 504 A 1 HETATM 22 N N2 5GP . . . E 3 50.784 1.182 -2.663 1 84.99 ? N2 5GP 504 A 1 HETATM 23 N N3 5GP . . . E 3 49.255 -0.574 -2.52 1 85.47 ? N3 5GP 504 A 1 HETATM 24 C C4 5GP . . . E 3 48.715 -1.733 -2.985 1 85.67 ? C4 5GP 504 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #