data_4FWQ # _model_server_result.job_id U1aUKJUa-0xibr_4z40U4w _model_server_result.datetime_utc '2024-12-02 17:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fwq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4FWQ # _exptl.entry_id 4FWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FWQ _cell.length_a 110.276 _cell.length_b 110.276 _cell.length_c 66.552 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.368 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 138 n n PG O2G GTP sing 139 n n PG O3G GTP sing 140 n n PG O3B GTP sing 141 n n O2G HOG2 GTP sing 142 n n O3G HOG3 GTP sing 143 n n O3B PB GTP sing 144 n n PB O1B GTP doub 145 n n PB O2B GTP sing 146 n n PB O3A GTP sing 147 n n O2B HOB2 GTP sing 148 n n O3A PA GTP sing 149 n n PA O1A GTP doub 150 n n PA O2A GTP sing 151 n n PA O5' GTP sing 152 n n O2A HOA2 GTP sing 153 n n O5' C5' GTP sing 154 n n C5' C4' GTP sing 155 n n C5' H5' GTP sing 156 n n C5' "H5''" GTP sing 157 n n C4' O4' GTP sing 158 n n C4' C3' GTP sing 159 n n C4' H4' GTP sing 160 n n O4' C1' GTP sing 161 n n C3' O3' GTP sing 162 n n C3' C2' GTP sing 163 n n C3' H3' GTP sing 164 n n O3' HO3' GTP sing 165 n n C2' O2' GTP sing 166 n n C2' C1' GTP sing 167 n n C2' H2' GTP sing 168 n n O2' HO2' GTP sing 169 n n C1' N9 GTP sing 170 n n C1' H1' GTP sing 171 n n N9 C8 GTP sing 172 n y N9 C4 GTP sing 173 n y C8 N7 GTP doub 174 n y C8 H8 GTP sing 175 n n N7 C5 GTP sing 176 n y C5 C6 GTP sing 177 n n C5 C4 GTP doub 178 n y C6 O6 GTP doub 179 n n C6 N1 GTP sing 180 n n N1 C2 GTP sing 181 n n N1 HN1 GTP sing 182 n n C2 N2 GTP sing 183 n n C2 N3 GTP doub 184 n n N2 HN21 GTP sing 185 n n N2 HN22 GTP sing 186 n n N3 C4 GTP sing 187 n n # _atom_sites.entry_id 4FWQ _atom_sites.fract_transf_matrix[1][1] 0.009068 _atom_sites.fract_transf_matrix[1][2] 0.005236 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 401 EDO EDO . C 2 EDO A 1 502 402 EDO EDO . D 3 GTP A 1 503 501 GTP GTP . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 5 HOH HOH . E 4 HOH A 6 606 6 HOH HOH . E 4 HOH A 7 607 7 HOH HOH . E 4 HOH A 8 608 8 HOH HOH . E 4 HOH A 9 609 9 HOH HOH . E 4 HOH A 10 610 10 HOH HOH . E 4 HOH A 11 611 11 HOH HOH . E 4 HOH A 12 612 12 HOH HOH . E 4 HOH A 13 613 13 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 15 HOH HOH . E 4 HOH A 16 616 16 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 18 HOH HOH . E 4 HOH A 19 619 19 HOH HOH . E 4 HOH A 20 620 20 HOH HOH . E 4 HOH A 21 621 21 HOH HOH . E 4 HOH A 22 622 22 HOH HOH . E 4 HOH A 23 623 23 HOH HOH . E 4 HOH A 24 624 24 HOH HOH . E 4 HOH A 25 625 25 HOH HOH . E 4 HOH A 26 626 26 HOH HOH . E 4 HOH A 27 627 27 HOH HOH . E 4 HOH A 28 628 28 HOH HOH . E 4 HOH A 29 629 29 HOH HOH . E 4 HOH A 30 630 30 HOH HOH . E 4 HOH A 31 631 31 HOH HOH . E 4 HOH A 32 632 32 HOH HOH . E 4 HOH A 33 633 33 HOH HOH . E 4 HOH A 34 634 34 HOH HOH . E 4 HOH A 35 635 35 HOH HOH . E 4 HOH A 36 636 36 HOH HOH . E 4 HOH A 37 637 37 HOH HOH . E 4 HOH A 38 638 38 HOH HOH . E 4 HOH A 39 639 39 HOH HOH . E 4 HOH A 40 640 40 HOH HOH . E 4 HOH A 41 641 41 HOH HOH . E 4 HOH A 42 642 42 HOH HOH . E 4 HOH A 43 643 43 HOH HOH . E 4 HOH A 44 644 44 HOH HOH . E 4 HOH A 45 645 45 HOH HOH . E 4 HOH A 46 646 46 HOH HOH . E 4 HOH A 47 647 47 HOH HOH . E 4 HOH A 48 648 48 HOH HOH . E 4 HOH A 49 649 49 HOH HOH . E 4 HOH A 50 650 50 HOH HOH . E 4 HOH A 51 651 51 HOH HOH . E 4 HOH A 52 652 52 HOH HOH . E 4 HOH A 53 653 53 HOH HOH . E 4 HOH A 54 654 54 HOH HOH . E 4 HOH A 55 655 55 HOH HOH . E 4 HOH A 56 656 56 HOH HOH . E 4 HOH A 57 657 57 HOH HOH . E 4 HOH A 58 658 58 HOH HOH . E 4 HOH A 59 659 59 HOH HOH . E 4 HOH A 60 660 60 HOH HOH . E 4 HOH A 61 661 61 HOH HOH . E 4 HOH A 62 662 62 HOH HOH . E 4 HOH A 63 663 63 HOH HOH . E 4 HOH A 64 664 64 HOH HOH . E 4 HOH A 65 665 65 HOH HOH . E 4 HOH A 66 666 66 HOH HOH . E 4 HOH A 67 667 67 HOH HOH . E 4 HOH A 68 668 68 HOH HOH . E 4 HOH A 69 669 69 HOH HOH . E 4 HOH A 70 670 70 HOH HOH . E 4 HOH A 71 671 71 HOH HOH . E 4 HOH A 72 672 72 HOH HOH . E 4 HOH A 73 673 73 HOH HOH . E 4 HOH A 74 674 74 HOH HOH . E 4 HOH A 75 675 75 HOH HOH . E 4 HOH A 76 676 76 HOH HOH . E 4 HOH A 77 677 77 HOH HOH . E 4 HOH A 78 678 78 HOH HOH . E 4 HOH A 79 679 79 HOH HOH . E 4 HOH A 80 680 80 HOH HOH . E 4 HOH A 81 681 81 HOH HOH . E 4 HOH A 82 682 82 HOH HOH . E 4 HOH A 83 683 83 HOH HOH . E 4 HOH A 84 684 84 HOH HOH . E 4 HOH A 85 685 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 3 -29.791 32.788 -4.349 1 80.41 ? PG GTP 503 A 1 HETATM 2 O O1G GTP . . . D 3 -30.521 34.105 -4.223 1 80.08 ? O1G GTP 503 A 1 HETATM 3 O O2G GTP . . . D 3 -30.7 31.654 -3.93 1 80.25 ? O2G GTP 503 A 1 HETATM 4 O O3G GTP . . . D 3 -29.362 32.575 -5.78 1 80.14 ? O3G GTP 503 A 1 HETATM 5 O O3B GTP . . . D 3 -28.481 32.84 -3.405 1 80.64 ? O3B GTP 503 A 1 HETATM 6 P PB GTP . . . D 3 -28.57 32.804 -1.792 1 81.11 ? PB GTP 503 A 1 HETATM 7 O O1B GTP . . . D 3 -27.659 31.717 -1.27 1 80.96 ? O1B GTP 503 A 1 HETATM 8 O O2B GTP . . . D 3 -29.984 32.605 -1.294 1 80.83 ? O2B GTP 503 A 1 HETATM 9 O O3A GTP . . . D 3 -27.994 34.245 -1.352 1 81.15 ? O3A GTP 503 A 1 HETATM 10 P PA GTP . . . D 3 -28.858 35.283 -0.469 1 81.1 ? PA GTP 503 A 1 HETATM 11 O O1A GTP . . . D 3 -29.311 34.628 0.816 1 81 ? O1A GTP 503 A 1 HETATM 12 O O2A GTP . . . D 3 -30.031 35.824 -1.253 1 80.93 ? O2A GTP 503 A 1 HETATM 13 O O5' GTP . . . D 3 -27.81 36.455 -0.134 1 81.18 ? O5' GTP 503 A 1 HETATM 14 C C5' GTP . . . D 3 -26.555 36.173 0.443 1 81.49 ? C5' GTP 503 A 1 HETATM 15 C C4' GTP . . . D 3 -25.634 37.358 0.19 1 81.72 ? C4' GTP 503 A 1 HETATM 16 O O4' GTP . . . D 3 -26.237 38.544 0.673 1 81.8 ? O4' GTP 503 A 1 HETATM 17 C C3' GTP . . . D 3 -24.297 37.199 0.898 1 81.79 ? C3' GTP 503 A 1 HETATM 18 O O3' GTP . . . D 3 -23.263 37.13 -0.057 1 81.75 ? O3' GTP 503 A 1 HETATM 19 C C2' GTP . . . D 3 -24.151 38.438 1.76 1 81.9 ? C2' GTP 503 A 1 HETATM 20 O O2' GTP . . . D 3 -22.91 39.071 1.556 1 82.2 ? O2' GTP 503 A 1 HETATM 21 C C1' GTP . . . D 3 -25.281 39.356 1.322 1 81.91 ? C1' GTP 503 A 1 HETATM 22 N N9 GTP . . . D 3 -25.856 40.054 2.488 1 81.91 ? N9 GTP 503 A 1 HETATM 23 C C8 GTP . . . D 3 -26.712 39.535 3.427 1 81.83 ? C8 GTP 503 A 1 HETATM 24 N N7 GTP . . . D 3 -26.994 40.501 4.331 1 81.79 ? N7 GTP 503 A 1 HETATM 25 C C5 GTP . . . D 3 -26.332 41.628 3.984 1 81.89 ? C5 GTP 503 A 1 HETATM 26 C C6 GTP . . . D 3 -26.264 42.897 4.558 1 82.01 ? C6 GTP 503 A 1 HETATM 27 O O6 GTP . . . D 3 -26.899 43.15 5.582 1 82.06 ? O6 GTP 503 A 1 HETATM 28 N N1 GTP . . . D 3 -25.485 43.876 3.963 1 82.02 ? N1 GTP 503 A 1 HETATM 29 C C2 GTP . . . D 3 -24.774 43.59 2.809 1 81.86 ? C2 GTP 503 A 1 HETATM 30 N N2 GTP . . . D 3 -24.022 44.527 2.24 1 81.65 ? N2 GTP 503 A 1 HETATM 31 N N3 GTP . . . D 3 -24.844 42.327 2.25 1 81.78 ? N3 GTP 503 A 1 HETATM 32 C C4 GTP . . . D 3 -25.61 41.361 2.825 1 81.86 ? C4 GTP 503 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #