data_4FWR # _model_server_result.job_id MMrZEfDrv7_pKd94J9Kv6g _model_server_result.datetime_utc '2024-11-02 15:34:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4FWR # _exptl.entry_id 4FWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FWR _cell.length_a 111.252 _cell.length_b 111.252 _cell.length_c 66.598 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -22.199333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 70 n n O3P HOP3 C5P sing 71 n n P O1P C5P doub 72 n n P O2P C5P sing 73 n n P O5' C5P sing 74 n n O2P HOP2 C5P sing 75 n n O5' C5' C5P sing 76 n n C5' C4' C5P sing 77 n n C5' "H5'1" C5P sing 78 n n C5' "H5'2" C5P sing 79 n n C4' O4' C5P sing 80 n n C4' C3' C5P sing 81 n n C4' H4' C5P sing 82 n n O4' C1' C5P sing 83 n n C3' O3' C5P sing 84 n n C3' C2' C5P sing 85 n n C3' H3' C5P sing 86 n n O3' HO3' C5P sing 87 n n C2' O2' C5P sing 88 n n C2' C1' C5P sing 89 n n C2' "H2'1" C5P sing 90 n n O2' HO2' C5P sing 91 n n C1' N1 C5P sing 92 n n C1' H1' C5P sing 93 n n N1 C2 C5P sing 94 n n N1 C6 C5P sing 95 n n C2 N3 C5P sing 96 n n C2 O2 C5P doub 97 n n N3 C4 C5P doub 98 n n C4 C5 C5P sing 99 n n C4 N4 C5P sing 100 n n C5 C6 C5P doub 101 n n C5 H5 C5P sing 102 n n C6 H6 C5P sing 103 n n N4 HN41 C5P sing 104 n n N4 HN42 C5P sing 105 n n # _atom_sites.entry_id 4FWR _atom_sites.fract_transf_matrix[1][1] 0.008989 _atom_sites.fract_transf_matrix[1][2] 0.00519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 401 EDO EDO . C 2 EDO A 1 502 402 EDO EDO . D 3 C5P A 1 503 501 C5P C5P . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 5 HOH HOH . E 4 HOH A 6 606 6 HOH HOH . E 4 HOH A 7 607 7 HOH HOH . E 4 HOH A 8 608 8 HOH HOH . E 4 HOH A 9 609 9 HOH HOH . E 4 HOH A 10 610 10 HOH HOH . E 4 HOH A 11 611 11 HOH HOH . E 4 HOH A 12 612 12 HOH HOH . E 4 HOH A 13 613 13 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 15 HOH HOH . E 4 HOH A 16 616 16 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 18 HOH HOH . E 4 HOH A 19 619 19 HOH HOH . E 4 HOH A 20 620 20 HOH HOH . E 4 HOH A 21 621 21 HOH HOH . E 4 HOH A 22 622 22 HOH HOH . E 4 HOH A 23 623 23 HOH HOH . E 4 HOH A 24 624 24 HOH HOH . E 4 HOH A 25 625 25 HOH HOH . E 4 HOH A 26 626 26 HOH HOH . E 4 HOH A 27 627 27 HOH HOH . E 4 HOH A 28 628 28 HOH HOH . E 4 HOH A 29 629 29 HOH HOH . E 4 HOH A 30 630 30 HOH HOH . E 4 HOH A 31 631 31 HOH HOH . E 4 HOH A 32 632 32 HOH HOH . E 4 HOH A 33 633 33 HOH HOH . E 4 HOH A 34 634 34 HOH HOH . E 4 HOH A 35 635 35 HOH HOH . E 4 HOH A 36 636 36 HOH HOH . E 4 HOH A 37 637 37 HOH HOH . E 4 HOH A 38 638 38 HOH HOH . E 4 HOH A 39 639 39 HOH HOH . E 4 HOH A 40 640 40 HOH HOH . E 4 HOH A 41 641 41 HOH HOH . E 4 HOH A 42 642 42 HOH HOH . E 4 HOH A 43 643 43 HOH HOH . E 4 HOH A 44 644 44 HOH HOH . E 4 HOH A 45 645 45 HOH HOH . E 4 HOH A 46 646 46 HOH HOH . E 4 HOH A 47 647 47 HOH HOH . E 4 HOH A 48 648 48 HOH HOH . E 4 HOH A 49 649 49 HOH HOH . E 4 HOH A 50 650 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . D 3 44.107 7.405 10.454 1 84.09 ? O3P C5P 503 A 1 HETATM 2 P P C5P . . . D 3 45.707 7.392 10.635 1 84.1 ? P C5P 503 A 1 HETATM 3 O O1P C5P . . . D 3 46.332 8.042 9.421 1 83.69 ? O1P C5P 503 A 1 HETATM 4 O O2P C5P . . . D 3 46.019 7.933 12.011 1 84.21 ? O2P C5P 503 A 1 HETATM 5 O O5' C5P . . . D 3 46.037 5.814 10.617 1 84.15 ? O5' C5P 503 A 1 HETATM 6 C C5' C5P . . . D 3 45.715 4.978 11.728 1 84.48 ? C5' C5P 503 A 1 HETATM 7 C C4' C5P . . . D 3 46.138 3.544 11.428 1 84.71 ? C4' C5P 503 A 1 HETATM 8 O O4' C5P . . . D 3 47.491 3.308 11.849 1 84.79 ? O4' C5P 503 A 1 HETATM 9 C C3' C5P . . . D 3 45.251 2.541 12.151 1 84.76 ? C3' C5P 503 A 1 HETATM 10 O O3' C5P . . . D 3 44.621 1.689 11.19 1 84.57 ? O3' C5P 503 A 1 HETATM 11 C C2' C5P . . . D 3 46.187 1.752 13.049 1 84.96 ? C2' C5P 503 A 1 HETATM 12 O O2' C5P . . . D 3 45.916 0.348 13.007 1 85.16 ? O2' C5P 503 A 1 HETATM 13 C C1' C5P . . . D 3 47.586 2.047 12.521 1 84.86 ? C1' C5P 503 A 1 HETATM 14 N N1 C5P . . . D 3 48.566 2.055 13.619 1 84.97 ? N1 C5P 503 A 1 HETATM 15 C C2 C5P . . . D 3 49.476 0.969 13.779 1 85.17 ? C2 C5P 503 A 1 HETATM 16 N N3 C5P . . . D 3 50.373 0.979 14.796 1 85.33 ? N3 C5P 503 A 1 HETATM 17 C C4 C5P . . . D 3 50.411 2.012 15.673 1 85.28 ? C4 C5P 503 A 1 HETATM 18 C C5 C5P . . . D 3 49.527 3.082 15.531 1 85.15 ? C5 C5P 503 A 1 HETATM 19 C C6 C5P . . . D 3 48.603 3.082 14.487 1 84.88 ? C6 C5P 503 A 1 HETATM 20 O O2 C5P . . . D 3 49.474 -0.008 12.994 1 84.87 ? O2 C5P 503 A 1 HETATM 21 N N4 C5P . . . D 3 51.316 2.006 16.685 1 85.11 ? N4 C5P 503 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 21 #