data_4FWS # _model_server_result.job_id rpWb4IiWYdBZl0uUwetIew _model_server_result.datetime_utc '2024-11-02 15:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 4FWS # _exptl.entry_id 4FWS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FWS _cell.length_a 110.661 _cell.length_b 110.661 _cell.length_c 66.544 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.362667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 4FWS _atom_sites.fract_transf_matrix[1][1] 0.009037 _atom_sites.fract_transf_matrix[1][2] 0.005217 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 401 EDO EDO . C 2 EDO A 1 502 402 EDO EDO . D 2 EDO A 1 503 403 EDO EDO . E 2 EDO A 1 504 404 EDO EDO . F 3 CTP A 1 505 501 CTP CTP . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 2 HOH HOH . G 4 HOH A 3 603 3 HOH HOH . G 4 HOH A 4 604 4 HOH HOH . G 4 HOH A 5 605 5 HOH HOH . G 4 HOH A 6 606 6 HOH HOH . G 4 HOH A 7 607 7 HOH HOH . G 4 HOH A 8 608 8 HOH HOH . G 4 HOH A 9 609 9 HOH HOH . G 4 HOH A 10 610 10 HOH HOH . G 4 HOH A 11 611 11 HOH HOH . G 4 HOH A 12 612 12 HOH HOH . G 4 HOH A 13 613 13 HOH HOH . G 4 HOH A 14 614 14 HOH HOH . G 4 HOH A 15 615 15 HOH HOH . G 4 HOH A 16 616 16 HOH HOH . G 4 HOH A 17 617 17 HOH HOH . G 4 HOH A 18 618 18 HOH HOH . G 4 HOH A 19 619 19 HOH HOH . G 4 HOH A 20 620 20 HOH HOH . G 4 HOH A 21 621 21 HOH HOH . G 4 HOH A 22 622 22 HOH HOH . G 4 HOH A 23 623 23 HOH HOH . G 4 HOH A 24 624 24 HOH HOH . G 4 HOH A 25 625 25 HOH HOH . G 4 HOH A 26 626 26 HOH HOH . G 4 HOH A 27 627 27 HOH HOH . G 4 HOH A 28 628 28 HOH HOH . G 4 HOH A 29 629 29 HOH HOH . G 4 HOH A 30 630 30 HOH HOH . G 4 HOH A 31 631 31 HOH HOH . G 4 HOH A 32 632 32 HOH HOH . G 4 HOH A 33 633 33 HOH HOH . G 4 HOH A 34 634 34 HOH HOH . G 4 HOH A 35 635 35 HOH HOH . G 4 HOH A 36 636 36 HOH HOH . G 4 HOH A 37 637 37 HOH HOH . G 4 HOH A 38 638 38 HOH HOH . G 4 HOH A 39 639 39 HOH HOH . G 4 HOH A 40 640 40 HOH HOH . G 4 HOH A 41 641 41 HOH HOH . G 4 HOH A 42 642 42 HOH HOH . G 4 HOH A 43 643 43 HOH HOH . G 4 HOH A 44 644 44 HOH HOH . G 4 HOH A 45 645 45 HOH HOH . G 4 HOH A 46 646 46 HOH HOH . G 4 HOH A 47 647 47 HOH HOH . G 4 HOH A 48 648 48 HOH HOH . G 4 HOH A 49 649 49 HOH HOH . G 4 HOH A 50 650 50 HOH HOH . G 4 HOH A 51 651 51 HOH HOH . G 4 HOH A 52 652 52 HOH HOH . G 4 HOH A 53 653 53 HOH HOH . G 4 HOH A 54 654 54 HOH HOH . G 4 HOH A 55 655 55 HOH HOH . G 4 HOH A 56 656 56 HOH HOH . G 4 HOH A 57 657 57 HOH HOH . G 4 HOH A 58 658 58 HOH HOH . G 4 HOH A 59 659 59 HOH HOH . G 4 HOH A 60 660 60 HOH HOH . G 4 HOH A 61 661 61 HOH HOH . G 4 HOH A 62 662 62 HOH HOH . G 4 HOH A 63 663 63 HOH HOH . G 4 HOH A 64 664 64 HOH HOH . G 4 HOH A 65 665 65 HOH HOH . G 4 HOH A 66 666 66 HOH HOH . G 4 HOH A 67 667 67 HOH HOH . G 4 HOH A 68 668 68 HOH HOH . G 4 HOH A 69 669 69 HOH HOH . G 4 HOH A 70 670 70 HOH HOH . G 4 HOH A 71 671 71 HOH HOH . G 4 HOH A 72 672 72 HOH HOH . G 4 HOH A 73 673 73 HOH HOH . G 4 HOH A 74 674 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . F 3 26.208 -40.221 2.353 1 60.47 ? N1 CTP 505 A 1 HETATM 2 C C2 CTP . . . F 3 26.008 -41.566 2.644 1 60.59 ? C2 CTP 505 A 1 HETATM 3 N N3 CTP . . . F 3 26.507 -42.094 3.822 1 60.67 ? N3 CTP 505 A 1 HETATM 4 C C4 CTP . . . F 3 27.366 -41.345 4.607 1 60.67 ? C4 CTP 505 A 1 HETATM 5 C C5 CTP . . . F 3 27.608 -40.011 4.286 1 60.59 ? C5 CTP 505 A 1 HETATM 6 C C6 CTP . . . F 3 27.108 -39.494 3.092 1 60.52 ? C6 CTP 505 A 1 HETATM 7 O O2 CTP . . . F 3 25.394 -42.303 1.87 1 60.5 ? O2 CTP 505 A 1 HETATM 8 N N4 CTP . . . F 3 27.959 -41.9 5.66 1 60.88 ? N4 CTP 505 A 1 HETATM 9 C C1' CTP . . . F 3 25.465 -39.591 1.237 1 60.29 ? C1' CTP 505 A 1 HETATM 10 C C2' CTP . . . F 3 24.385 -38.643 1.732 1 60.15 ? C2' CTP 505 A 1 HETATM 11 O O2' CTP . . . F 3 23.168 -39.333 1.877 1 60.57 ? O2' CTP 505 A 1 HETATM 12 C C3' CTP . . . F 3 24.306 -37.587 0.649 1 59.96 ? C3' CTP 505 A 1 HETATM 13 C C4' CTP . . . F 3 25.629 -37.688 -0.093 1 60.03 ? C4' CTP 505 A 1 HETATM 14 O O4' CTP . . . F 3 26.31 -38.834 0.391 1 60.16 ? O4' CTP 505 A 1 HETATM 15 O O3' CTP . . . F 3 23.266 -37.897 -0.249 1 59.68 ? O3' CTP 505 A 1 HETATM 16 C C5' CTP . . . F 3 26.489 -36.446 0.101 1 59.94 ? C5' CTP 505 A 1 HETATM 17 O O5' CTP . . . F 3 27.708 -36.637 -0.577 1 59.92 ? O5' CTP 505 A 1 HETATM 18 P PA CTP . . . F 3 28.876 -35.534 -0.502 1 59.92 ? PA CTP 505 A 1 HETATM 19 O O1A CTP . . . F 3 30.048 -35.987 -1.339 1 59.72 ? O1A CTP 505 A 1 HETATM 20 O O2A CTP . . . F 3 29.292 -35.297 0.929 1 60.02 ? O2A CTP 505 A 1 HETATM 21 O O3A CTP . . . F 3 28.194 -34.228 -1.155 1 60.31 ? O3A CTP 505 A 1 HETATM 22 P PB CTP . . . F 3 28.893 -32.775 -1.102 0.7 60.89 ? PB CTP 505 A 1 HETATM 23 O O1B CTP . . . F 3 29.652 -32.597 0.193 0.7 60.7 ? O1B CTP 505 A 1 HETATM 24 O O2B CTP . . . F 3 27.866 -31.681 -1.281 0.7 60.6 ? O2B CTP 505 A 1 HETATM 25 O O3B CTP . . . F 3 29.926 -32.797 -2.339 0.7 61.03 ? O3B CTP 505 A 1 HETATM 26 P PG CTP . . . F 3 29.433 -33.223 -3.813 0.7 61.26 ? PG CTP 505 A 1 HETATM 27 O O1G CTP . . . F 3 29.802 -34.673 -4.033 0.7 61.2 ? O1G CTP 505 A 1 HETATM 28 O O2G CTP . . . F 3 30.11 -32.364 -4.856 0.7 61.11 ? O2G CTP 505 A 1 HETATM 29 O O3G CTP . . . F 3 27.938 -33.05 -3.916 0.7 60.95 ? O3G CTP 505 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #