data_4FWT # _model_server_result.job_id fw0DZ1y63b81dzXWbcpFtQ _model_server_result.datetime_utc '2024-11-15 05:30:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fwt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2501}' # _entry.id 4FWT # _exptl.entry_id 4FWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FWT _cell.length_a 137.514 _cell.length_b 255.047 _cell.length_c 100.909 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 968 A ASP 968 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc2 A OD2 ASP 968 A ASP 968 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc3 A OD1 ASP 968 A ASP 968 1_555 F CA CA . A CA 2503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 A O LEU 969 A LEU 969 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc5 A OD2 ASP 1053 A ASP 1053 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc6 A OD1 ASP 1053 A ASP 1053 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc7 A OD1 ASP 1053 A ASP 1053 1_555 F CA CA . A CA 2503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc8 D O1A GTP . A GTP 2501 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc9 D O3B GTP . A GTP 2501 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc10 D O2B GTP . A GTP 2501 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc11 D O2G GTP . A GTP 2501 1_555 E CA CA . A CA 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? hydrog 'C-G PAIR' hydrog1 B O2 C 3 G C 2003 1_555 C N1 G 6 T G 2106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N3 U 4 G U 2004 1_555 C N1 A 5 T A 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O4 U 4 G U 2004 1_555 C N6 A 5 T A 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog4 B N6 A 5 G A 2005 1_555 C O2 U 4 T U 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N3 C 6 G C 2006 1_555 C N1 G 3 T G 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N4 C 6 G C 2006 1_555 C O6 G 3 T G 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O2 C 6 G C 2006 1_555 C N2 G 3 T G 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog8 B O2 C 7 G C 2007 1_555 C N1 G 2 T G 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 C 8 G C 2008 1_555 C N1 G 1 T G 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 C 8 G C 2008 1_555 C O6 G 1 T G 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 C 8 G C 2008 1_555 C N2 G 1 T G 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 244 n n PG O2G GTP sing 245 n n PG O3G GTP sing 246 n n PG O3B GTP sing 247 n n O2G HOG2 GTP sing 248 n n O3G HOG3 GTP sing 249 n n O3B PB GTP sing 250 n n PB O1B GTP doub 251 n n PB O2B GTP sing 252 n n PB O3A GTP sing 253 n n O2B HOB2 GTP sing 254 n n O3A PA GTP sing 255 n n PA O1A GTP doub 256 n n PA O2A GTP sing 257 n n PA O5' GTP sing 258 n n O2A HOA2 GTP sing 259 n n O5' C5' GTP sing 260 n n C5' C4' GTP sing 261 n n C5' H5' GTP sing 262 n n C5' "H5''" GTP sing 263 n n C4' O4' GTP sing 264 n n C4' C3' GTP sing 265 n n C4' H4' GTP sing 266 n n O4' C1' GTP sing 267 n n C3' O3' GTP sing 268 n n C3' C2' GTP sing 269 n n C3' H3' GTP sing 270 n n O3' HO3' GTP sing 271 n n C2' O2' GTP sing 272 n n C2' C1' GTP sing 273 n n C2' H2' GTP sing 274 n n O2' HO2' GTP sing 275 n n C1' N9 GTP sing 276 n n C1' H1' GTP sing 277 n n N9 C8 GTP sing 278 n y N9 C4 GTP sing 279 n y C8 N7 GTP doub 280 n y C8 H8 GTP sing 281 n n N7 C5 GTP sing 282 n y C5 C6 GTP sing 283 n n C5 C4 GTP doub 284 n y C6 O6 GTP doub 285 n n C6 N1 GTP sing 286 n n N1 C2 GTP sing 287 n n N1 HN1 GTP sing 288 n n C2 N2 GTP sing 289 n n C2 N3 GTP doub 290 n n N2 HN21 GTP sing 291 n n N2 HN22 GTP sing 292 n n N3 C4 GTP sing 293 n n # _atom_sites.entry_id 4FWT _atom_sites.fract_transf_matrix[1][1] 0.007272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 2501 2501 GTP GTP . E 5 CA A 1 2502 3001 CA CA . F 5 CA A 1 2503 3002 CA CA . G 6 HOH A 1 2601 1 HOH HOH . G 6 HOH A 2 2602 2 HOH HOH . G 6 HOH A 3 2603 3 HOH HOH . G 6 HOH A 4 2604 4 HOH HOH . G 6 HOH A 5 2605 5 HOH HOH . G 6 HOH A 6 2606 6 HOH HOH . G 6 HOH A 7 2607 7 HOH HOH . G 6 HOH A 8 2608 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 17.407 71.48 -2.33 1 113.1 ? PG GTP 2501 A 1 HETATM 2 O O1G GTP . . . D 4 18.464 70.763 -1.521 1 113.02 ? O1G GTP 2501 A 1 HETATM 3 O O2G GTP . . . D 4 17.849 71.667 -3.774 1 112.18 ? O2G GTP 2501 A 1 HETATM 4 O O3G GTP . . . D 4 17.119 72.858 -1.749 1 105.47 ? O3G GTP 2501 A 1 HETATM 5 O O3B GTP . . . D 4 15.983 70.639 -2.386 1 106.05 ? O3B GTP 2501 A 1 HETATM 6 P PB GTP . . . D 4 15.565 69.18 -1.745 1 97 ? PB GTP 2501 A 1 HETATM 7 O O1B GTP . . . D 4 14.666 69.484 -0.561 1 103.43 ? O1B GTP 2501 A 1 HETATM 8 O O2B GTP . . . D 4 14.723 68.307 -2.634 1 98.43 ? O2B GTP 2501 A 1 HETATM 9 O O3A GTP . . . D 4 16.955 68.437 -1.331 1 96.17 ? O3A GTP 2501 A 1 HETATM 10 P PA GTP . . . D 4 17.911 67.335 -2.085 1 99.96 ? PA GTP 2501 A 1 HETATM 11 O O1A GTP . . . D 4 18.19 67.456 -3.582 1 99.4 ? O1A GTP 2501 A 1 HETATM 12 O O2A GTP . . . D 4 19.146 67.156 -1.206 1 115.44 ? O2A GTP 2501 A 1 HETATM 13 O O5' GTP . . . D 4 17.088 65.991 -1.971 1 100.55 ? O5' GTP 2501 A 1 HETATM 14 C C5' GTP . . . D 4 16.265 65.753 -3.096 1 105.39 ? C5' GTP 2501 A 1 HETATM 15 C C4' GTP . . . D 4 15.327 64.695 -2.631 1 110.07 ? C4' GTP 2501 A 1 HETATM 16 O O4' GTP . . . D 4 16.052 63.846 -1.752 1 111.83 ? O4' GTP 2501 A 1 HETATM 17 C C3' GTP . . . D 4 14.088 65.205 -1.89 1 118.3 ? C3' GTP 2501 A 1 HETATM 18 O O3' GTP . . . D 4 12.945 65.318 -2.725 1 122.85 ? O3' GTP 2501 A 1 HETATM 19 C C2' GTP . . . D 4 13.786 64.097 -0.896 1 126.9 ? C2' GTP 2501 A 1 HETATM 20 O O2' GTP . . . D 4 12.677 63.235 -1.172 1 118.75 ? O2' GTP 2501 A 1 HETATM 21 C C1' GTP . . . D 4 15.081 63.28 -0.844 1 126.01 ? C1' GTP 2501 A 1 HETATM 22 N N9 GTP . . . D 4 15.551 63.4 0.56 1 122.52 ? N9 GTP 2501 A 1 HETATM 23 C C8 GTP . . . D 4 16.775 63.812 0.964 1 119.4 ? C8 GTP 2501 A 1 HETATM 24 N N7 GTP . . . D 4 16.876 63.798 2.311 1 111.49 ? N7 GTP 2501 A 1 HETATM 25 C C5 GTP . . . D 4 15.704 63.378 2.807 1 111.8 ? C5 GTP 2501 A 1 HETATM 26 C C6 GTP . . . D 4 15.181 63.145 4.14 1 112.78 ? C6 GTP 2501 A 1 HETATM 27 O O6 GTP . . . D 4 15.897 63.348 5.148 1 109.65 ? O6 GTP 2501 A 1 HETATM 28 N N1 GTP . . . D 4 13.892 62.693 4.244 1 111.64 ? N1 GTP 2501 A 1 HETATM 29 C C2 GTP . . . D 4 13.103 62.459 3.136 1 113.95 ? C2 GTP 2501 A 1 HETATM 30 N N2 GTP . . . D 4 11.822 62.007 3.244 1 117 ? N2 GTP 2501 A 1 HETATM 31 N N3 GTP . . . D 4 13.578 62.673 1.869 1 108.1 ? N3 GTP 2501 A 1 HETATM 32 C C4 GTP . . . D 4 14.853 63.102 1.679 1 113.25 ? C4 GTP 2501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #