data_4FWY # _model_server_result.job_id ggKpLgHr1UN2sb7AQBJP4g _model_server_result.datetime_utc '2024-10-10 17:19:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4FWY # _exptl.entry_id 4FWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FWY _cell.length_a 39.734 _cell.length_b 48.286 _cell.length_c 77.691 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 12 A HIS 12 1_555 E CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 A NE2 HIS 24 A HIS 24 1_555 D CU CU . A CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 A NE2 HIS 29 A HIS 29 1_555 C CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 A NE2 HIS 64 A HIS 64 1_555 C CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 A ND1 HIS 81 A HIS 81 1_555 G CU CU . A CU 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc6 A NE2 HIS 93 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 A NE2 HIS 116 A HIS 116 1_555 F CU CU . A CU 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 A NE2 HIS 119 A HIS 119 1_555 D CU CU . A CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.666 ? metalc ? metalc9 A OD2 ASP 122 A ASP 122 1_555 E CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc10 B FE HEM . A HEM 201 1_555 H O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc11 C CU CU . A CU 202 1_555 H O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc12 F CU CU . A CU 205 1_555 H O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 4FWY _atom_sites.fract_transf_matrix[1][1] 0.025167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 155 HEM HEM . C 3 CU A 1 202 156 CU CU . D 3 CU A 1 203 157 CU CU . E 3 CU A 1 204 158 CU CU . F 3 CU A 1 205 159 CU CU . G 3 CU A 1 206 160 CU CU . H 4 HOH A 1 301 1 HOH HOH . H 4 HOH A 2 302 2 HOH HOH . H 4 HOH A 3 303 3 HOH HOH . H 4 HOH A 4 304 4 HOH HOH . H 4 HOH A 5 305 5 HOH HOH . H 4 HOH A 6 306 6 HOH HOH . H 4 HOH A 7 307 7 HOH HOH . H 4 HOH A 8 308 8 HOH HOH . H 4 HOH A 9 309 9 HOH HOH . H 4 HOH A 10 310 10 HOH HOH . H 4 HOH A 11 311 11 HOH HOH . H 4 HOH A 12 312 12 HOH HOH . H 4 HOH A 13 313 13 HOH HOH . H 4 HOH A 14 314 14 HOH HOH . H 4 HOH A 15 315 15 HOH HOH . H 4 HOH A 16 316 16 HOH HOH . H 4 HOH A 17 317 17 HOH HOH . H 4 HOH A 18 318 19 HOH HOH . H 4 HOH A 19 319 20 HOH HOH . H 4 HOH A 20 320 21 HOH HOH . H 4 HOH A 21 321 22 HOH HOH . H 4 HOH A 22 322 23 HOH HOH . H 4 HOH A 23 323 24 HOH HOH . H 4 HOH A 24 324 25 HOH HOH . H 4 HOH A 25 325 26 HOH HOH . H 4 HOH A 26 326 27 HOH HOH . H 4 HOH A 27 327 28 HOH HOH . H 4 HOH A 28 328 29 HOH HOH . H 4 HOH A 29 329 30 HOH HOH . H 4 HOH A 30 330 31 HOH HOH . H 4 HOH A 31 331 32 HOH HOH . H 4 HOH A 32 332 33 HOH HOH . H 4 HOH A 33 333 34 HOH HOH . H 4 HOH A 34 334 35 HOH HOH . H 4 HOH A 35 335 36 HOH HOH . H 4 HOH A 36 336 37 HOH HOH . H 4 HOH A 37 337 38 HOH HOH . H 4 HOH A 38 338 39 HOH HOH . H 4 HOH A 39 339 40 HOH HOH . H 4 HOH A 40 340 41 HOH HOH . H 4 HOH A 41 341 42 HOH HOH . H 4 HOH A 42 342 43 HOH HOH . H 4 HOH A 43 343 44 HOH HOH . H 4 HOH A 44 344 45 HOH HOH . H 4 HOH A 45 345 46 HOH HOH . H 4 HOH A 46 346 47 HOH HOH . H 4 HOH A 47 347 48 HOH HOH . H 4 HOH A 48 348 49 HOH HOH . H 4 HOH A 49 349 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -5.956 -9.073 9.644 1 29.27 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 -4.938 -6.768 5.326 1 26.72 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -4.956 -2.414 7.608 1 24.85 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -6.361 -4.741 11.85 1 30.2 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -5.679 -8.765 8.264 1 27.35 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 -5.65 -9.825 7.245 1 28.76 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 -5.344 -9.149 5.999 1 26.77 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 -5.202 -7.726 6.371 1 27.6 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 -5.182 -9.744 4.592 1 26.87 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 -5.884 -11.312 7.473 1 33.31 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 -7.251 -11.673 6.912 1 39.65 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 -8.357 -10.735 7.395 1 43.17 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 -8.826 -9.907 6.57 1 47.99 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 -8.785 -10.826 8.579 1 36.43 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -4.859 -5.33 5.572 1 24.88 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 -4.434 -4.397 4.495 1 23.93 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 -4.453 -3.127 5.205 1 24.87 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 -4.864 -3.463 6.592 1 25.24 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 -4.136 -4.75 3.05 1 24.38 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 -4.127 -1.728 4.744 1 23.9 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 -3.274 -1.566 3.744 1 26.16 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -5.282 -2.651 9.014 1 27.53 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -5.212 -1.583 10.07 1 27.92 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -5.593 -2.308 11.303 1 30.37 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -5.897 -3.718 10.929 1 29.61 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -4.777 -0.169 9.844 1 25.98 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -5.706 -1.803 12.699 1 32.21 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -4.924 -0.843 13.133 1 38.31 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -6.367 -6.129 11.516 1 31.57 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -6.628 -7.038 12.654 1 35.27 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -6.509 -8.318 11.977 1 34.91 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -6.183 -7.99 10.581 1 31.51 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -6.947 -6.68 14.101 1 30.31 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -6.62 -9.719 12.525 1 42.27 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -5.166 -9.957 12.947 1 45.22 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -5.1 -11.29 13.648 1 53.91 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -5.922 -11.531 14.561 1 52.22 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 -4.23 -12.093 13.271 1 58.46 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -5.33 -7.426 7.788 1 27.13 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 -5.046 -4.763 6.772 1 25.06 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -5.632 -3.973 9.534 1 27.36 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -6.085 -6.69 10.297 1 28.11 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 -5.687 -5.661 8.526 1 27.08 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #