data_4FX8
#
_model_server_result.job_id            mmN9AmsGU1W3PmJY8RR0hQ 
_model_server_result.datetime_utc      '2024-10-17 11:22:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4FX8 
#
_exptl.entry_id    4FX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "6-HYDROXYURIDINE-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4FX8 
_cell.length_a            91.511 
_cell.length_b            91.511 
_cell.length_c            135.376 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C9 H13 N2 O10 P' 
_chem_comp.formula_weight    340.181 
_chem_comp.id                BMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "6-HYDROXYURIDINE-5'-PHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 BMP doub 70 n n 
P OP2 BMP sing 71 n n 
P OP3 BMP sing 72 n n 
P O5' BMP sing 73 n n 
OP2 HOP2 BMP sing 74 n n 
OP3 HOP3 BMP sing 75 n n 
O5' C5' BMP sing 76 n n 
C5' C4' BMP sing 77 n n 
C5' H5' BMP sing 78 n n 
C5' "H5''" BMP sing 79 n n 
C4' O4' BMP sing 80 n n 
C4' C3' BMP sing 81 n n 
C4' H4' BMP sing 82 n n 
O4' C1' BMP sing 83 n n 
C3' O3' BMP sing 84 n n 
C3' C2' BMP sing 85 n n 
C3' H3' BMP sing 86 n n 
O3' HO3' BMP sing 87 n n 
C2' O2' BMP sing 88 n n 
C2' C1' BMP sing 89 n n 
C2' H2' BMP sing 90 n n 
O2' HO2' BMP sing 91 n n 
C1' N1 BMP sing 92 n n 
C1' H1' BMP sing 93 n n 
N1 C2 BMP sing 94 n n 
N1 C6 BMP sing 95 n n 
C2 O2 BMP doub 96 n n 
C2 N3 BMP sing 97 n n 
N3 C4 BMP sing 98 n n 
N3 HN3 BMP sing 99 n n 
C4 O4 BMP doub 100 n n 
C4 C5 BMP sing 101 n n 
C5 C6 BMP doub 102 n n 
C5 H51 BMP sing 103 n n 
C6 O1 BMP sing 104 n n 
O1 HO1 BMP sing 105 n n 
#
_atom_sites.entry_id                     4FX8 
_atom_sites.fract_transf_matrix[1][1]    0.010928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BMP A 1 301 1 BMP BMP . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 2 BMP B 1 301 2 BMP BMP . 
F 3 SO4 B 1 302 2 SO4 SO4 . 
G 4 HOH A 1 401 1 HOH HOH . 
G 4 HOH A 2 402 2 HOH HOH . 
G 4 HOH A 3 403 7 HOH HOH . 
G 4 HOH A 4 404 8 HOH HOH . 
G 4 HOH A 5 405 9 HOH HOH . 
G 4 HOH A 6 406 10 HOH HOH . 
G 4 HOH A 7 407 13 HOH HOH . 
G 4 HOH A 8 408 14 HOH HOH . 
G 4 HOH A 9 409 15 HOH HOH . 
G 4 HOH A 10 410 17 HOH HOH . 
G 4 HOH A 11 411 22 HOH HOH . 
G 4 HOH A 12 412 23 HOH HOH . 
G 4 HOH A 13 413 25 HOH HOH . 
G 4 HOH A 14 414 27 HOH HOH . 
G 4 HOH A 15 415 29 HOH HOH . 
G 4 HOH A 16 416 30 HOH HOH . 
G 4 HOH A 17 417 33 HOH HOH . 
G 4 HOH A 18 418 34 HOH HOH . 
G 4 HOH A 19 419 37 HOH HOH . 
G 4 HOH A 20 420 38 HOH HOH . 
G 4 HOH A 21 421 39 HOH HOH . 
G 4 HOH A 22 422 40 HOH HOH . 
G 4 HOH A 23 423 48 HOH HOH . 
G 4 HOH A 24 424 52 HOH HOH . 
G 4 HOH A 25 425 53 HOH HOH . 
G 4 HOH A 26 426 54 HOH HOH . 
G 4 HOH A 27 427 57 HOH HOH . 
G 4 HOH A 28 428 58 HOH HOH . 
G 4 HOH A 29 429 60 HOH HOH . 
G 4 HOH A 30 430 61 HOH HOH . 
G 4 HOH A 31 431 62 HOH HOH . 
G 4 HOH A 32 432 63 HOH HOH . 
G 4 HOH A 33 433 67 HOH HOH . 
G 4 HOH A 34 434 68 HOH HOH . 
G 4 HOH A 35 435 70 HOH HOH . 
G 4 HOH A 36 436 74 HOH HOH . 
G 4 HOH A 37 437 80 HOH HOH . 
G 4 HOH A 38 438 81 HOH HOH . 
G 4 HOH A 39 439 83 HOH HOH . 
G 4 HOH A 40 440 84 HOH HOH . 
G 4 HOH A 41 441 85 HOH HOH . 
G 4 HOH A 42 442 88 HOH HOH . 
G 4 HOH A 43 443 91 HOH HOH . 
G 4 HOH A 44 444 92 HOH HOH . 
G 4 HOH A 45 445 93 HOH HOH . 
G 4 HOH A 46 446 94 HOH HOH . 
G 4 HOH A 47 447 96 HOH HOH . 
G 4 HOH A 48 448 98 HOH HOH . 
G 4 HOH A 49 449 101 HOH HOH . 
G 4 HOH A 50 450 104 HOH HOH . 
G 4 HOH A 51 451 106 HOH HOH . 
G 4 HOH A 52 452 107 HOH HOH . 
G 4 HOH A 53 453 109 HOH HOH . 
G 4 HOH A 54 454 110 HOH HOH . 
G 4 HOH A 55 455 112 HOH HOH . 
G 4 HOH A 56 456 113 HOH HOH . 
G 4 HOH A 57 457 114 HOH HOH . 
G 4 HOH A 58 458 116 HOH HOH . 
G 4 HOH A 59 459 117 HOH HOH . 
G 4 HOH A 60 460 118 HOH HOH . 
G 4 HOH A 61 461 120 HOH HOH . 
G 4 HOH A 62 462 121 HOH HOH . 
G 4 HOH A 63 463 122 HOH HOH . 
G 4 HOH A 64 464 124 HOH HOH . 
G 4 HOH A 65 465 126 HOH HOH . 
G 4 HOH A 66 466 128 HOH HOH . 
G 4 HOH A 67 467 132 HOH HOH . 
G 4 HOH A 68 468 133 HOH HOH . 
G 4 HOH A 69 469 136 HOH HOH . 
G 4 HOH A 70 470 137 HOH HOH . 
G 4 HOH A 71 471 143 HOH HOH . 
G 4 HOH A 72 472 145 HOH HOH . 
G 4 HOH A 73 473 146 HOH HOH . 
G 4 HOH A 74 474 149 HOH HOH . 
G 4 HOH A 75 475 154 HOH HOH . 
G 4 HOH A 76 476 155 HOH HOH . 
G 4 HOH A 77 477 157 HOH HOH . 
G 4 HOH A 78 478 159 HOH HOH . 
G 4 HOH A 79 479 161 HOH HOH . 
G 4 HOH A 80 480 163 HOH HOH . 
G 4 HOH A 81 481 166 HOH HOH . 
G 4 HOH A 82 482 167 HOH HOH . 
G 4 HOH A 83 483 168 HOH HOH . 
G 4 HOH A 84 484 172 HOH HOH . 
G 4 HOH A 85 485 175 HOH HOH . 
G 4 HOH A 86 486 177 HOH HOH . 
G 4 HOH A 87 487 183 HOH HOH . 
G 4 HOH A 88 488 184 HOH HOH . 
G 4 HOH A 89 489 185 HOH HOH . 
G 4 HOH A 90 490 187 HOH HOH . 
G 4 HOH A 91 491 188 HOH HOH . 
G 4 HOH A 92 492 189 HOH HOH . 
G 4 HOH A 93 493 191 HOH HOH . 
G 4 HOH A 94 494 192 HOH HOH . 
G 4 HOH A 95 495 200 HOH HOH . 
G 4 HOH A 96 496 202 HOH HOH . 
G 4 HOH A 97 497 204 HOH HOH . 
G 4 HOH A 98 498 211 HOH HOH . 
G 4 HOH A 99 499 212 HOH HOH . 
G 4 HOH A 100 500 216 HOH HOH . 
G 4 HOH A 101 501 225 HOH HOH . 
G 4 HOH A 102 502 241 HOH HOH . 
G 4 HOH A 103 503 242 HOH HOH . 
G 4 HOH A 104 504 243 HOH HOH . 
G 4 HOH A 105 505 244 HOH HOH . 
H 4 HOH B 1 401 3 HOH HOH . 
H 4 HOH B 2 402 4 HOH HOH . 
H 4 HOH B 3 403 5 HOH HOH . 
H 4 HOH B 4 404 6 HOH HOH . 
H 4 HOH B 5 405 11 HOH HOH . 
H 4 HOH B 6 406 12 HOH HOH . 
H 4 HOH B 7 407 16 HOH HOH . 
H 4 HOH B 8 408 18 HOH HOH . 
H 4 HOH B 9 409 19 HOH HOH . 
H 4 HOH B 10 410 20 HOH HOH . 
H 4 HOH B 11 411 21 HOH HOH . 
H 4 HOH B 12 412 24 HOH HOH . 
H 4 HOH B 13 413 26 HOH HOH . 
H 4 HOH B 14 414 28 HOH HOH . 
H 4 HOH B 15 415 31 HOH HOH . 
H 4 HOH B 16 416 32 HOH HOH . 
H 4 HOH B 17 417 35 HOH HOH . 
H 4 HOH B 18 418 36 HOH HOH . 
H 4 HOH B 19 419 41 HOH HOH . 
H 4 HOH B 20 420 42 HOH HOH . 
H 4 HOH B 21 421 43 HOH HOH . 
H 4 HOH B 22 422 44 HOH HOH . 
H 4 HOH B 23 423 45 HOH HOH . 
H 4 HOH B 24 424 46 HOH HOH . 
H 4 HOH B 25 425 49 HOH HOH . 
H 4 HOH B 26 426 50 HOH HOH . 
H 4 HOH B 27 427 51 HOH HOH . 
H 4 HOH B 28 428 55 HOH HOH . 
H 4 HOH B 29 429 56 HOH HOH . 
H 4 HOH B 30 430 59 HOH HOH . 
H 4 HOH B 31 431 64 HOH HOH . 
H 4 HOH B 32 432 65 HOH HOH . 
H 4 HOH B 33 433 66 HOH HOH . 
H 4 HOH B 34 434 69 HOH HOH . 
H 4 HOH B 35 435 71 HOH HOH . 
H 4 HOH B 36 436 72 HOH HOH . 
H 4 HOH B 37 437 73 HOH HOH . 
H 4 HOH B 38 438 75 HOH HOH . 
H 4 HOH B 39 439 76 HOH HOH . 
H 4 HOH B 40 440 77 HOH HOH . 
H 4 HOH B 41 441 78 HOH HOH . 
H 4 HOH B 42 442 79 HOH HOH . 
H 4 HOH B 43 443 82 HOH HOH . 
H 4 HOH B 44 444 86 HOH HOH . 
H 4 HOH B 45 445 87 HOH HOH . 
H 4 HOH B 46 446 89 HOH HOH . 
H 4 HOH B 47 447 90 HOH HOH . 
H 4 HOH B 48 448 95 HOH HOH . 
H 4 HOH B 49 449 97 HOH HOH . 
H 4 HOH B 50 450 99 HOH HOH . 
H 4 HOH B 51 451 100 HOH HOH . 
H 4 HOH B 52 452 102 HOH HOH . 
H 4 HOH B 53 453 103 HOH HOH . 
H 4 HOH B 54 454 105 HOH HOH . 
H 4 HOH B 55 455 108 HOH HOH . 
H 4 HOH B 56 456 111 HOH HOH . 
H 4 HOH B 57 457 115 HOH HOH . 
H 4 HOH B 58 458 119 HOH HOH . 
H 4 HOH B 59 459 123 HOH HOH . 
H 4 HOH B 60 460 125 HOH HOH . 
H 4 HOH B 61 461 127 HOH HOH . 
H 4 HOH B 62 462 129 HOH HOH . 
H 4 HOH B 63 463 130 HOH HOH . 
H 4 HOH B 64 464 131 HOH HOH . 
H 4 HOH B 65 465 134 HOH HOH . 
H 4 HOH B 66 466 138 HOH HOH . 
H 4 HOH B 67 467 139 HOH HOH . 
H 4 HOH B 68 468 140 HOH HOH . 
H 4 HOH B 69 469 141 HOH HOH . 
H 4 HOH B 70 470 142 HOH HOH . 
H 4 HOH B 71 471 144 HOH HOH . 
H 4 HOH B 72 472 147 HOH HOH . 
H 4 HOH B 73 473 148 HOH HOH . 
H 4 HOH B 74 474 150 HOH HOH . 
H 4 HOH B 75 475 151 HOH HOH . 
H 4 HOH B 76 476 152 HOH HOH . 
H 4 HOH B 77 477 153 HOH HOH . 
H 4 HOH B 78 478 156 HOH HOH . 
H 4 HOH B 79 479 158 HOH HOH . 
H 4 HOH B 80 480 160 HOH HOH . 
H 4 HOH B 81 481 162 HOH HOH . 
H 4 HOH B 82 482 164 HOH HOH . 
H 4 HOH B 83 483 169 HOH HOH . 
H 4 HOH B 84 484 170 HOH HOH . 
H 4 HOH B 85 485 171 HOH HOH . 
H 4 HOH B 86 486 173 HOH HOH . 
H 4 HOH B 87 487 174 HOH HOH . 
H 4 HOH B 88 488 176 HOH HOH . 
H 4 HOH B 89 489 178 HOH HOH . 
H 4 HOH B 90 490 179 HOH HOH . 
H 4 HOH B 91 491 180 HOH HOH . 
H 4 HOH B 92 492 182 HOH HOH . 
H 4 HOH B 93 493 186 HOH HOH . 
H 4 HOH B 94 494 193 HOH HOH . 
H 4 HOH B 95 495 194 HOH HOH . 
H 4 HOH B 96 496 195 HOH HOH . 
H 4 HOH B 97 497 196 HOH HOH . 
H 4 HOH B 98 498 197 HOH HOH . 
H 4 HOH B 99 499 198 HOH HOH . 
H 4 HOH B 100 500 199 HOH HOH . 
H 4 HOH B 101 501 201 HOH HOH . 
H 4 HOH B 102 502 203 HOH HOH . 
H 4 HOH B 103 503 205 HOH HOH . 
H 4 HOH B 104 504 218 HOH HOH . 
H 4 HOH B 105 505 219 HOH HOH . 
H 4 HOH B 106 506 220 HOH HOH . 
H 4 HOH B 107 507 222 HOH HOH . 
H 4 HOH B 108 508 223 HOH HOH . 
H 4 HOH B 109 509 224 HOH HOH . 
H 4 HOH B 110 510 232 HOH HOH . 
H 4 HOH B 111 511 233 HOH HOH . 
H 4 HOH B 112 512 234 HOH HOH . 
H 4 HOH B 113 513 245 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P BMP . . . C 2 4.543 -34.655 6.812 1 26.04 ? P BMP 301 A 1 
HETATM 2 O OP1 BMP . . . C 2 3.231 -35.361 6.754 1 25.06 ? OP1 BMP 301 A 1 
HETATM 3 O OP2 BMP . . . C 2 5.656 -35.001 5.715 1 24.13 ? OP2 BMP 301 A 1 
HETATM 4 O OP3 BMP . . . C 2 4.129 -33.109 6.627 1 23.36 ? OP3 BMP 301 A 1 
HETATM 5 O O5' BMP . . . C 2 5.181 -34.802 8.26 1 25.59 ? O5' BMP 301 A 1 
HETATM 6 C C5' BMP . . . C 2 4.389 -34.68 9.429 1 24.92 ? C5' BMP 301 A 1 
HETATM 7 C C4' BMP . . . C 2 5.215 -34.913 10.659 1 26.58 ? C4' BMP 301 A 1 
HETATM 8 O O4' BMP . . . C 2 4.37 -34.782 11.827 1 18.53 ? O4' BMP 301 A 1 
HETATM 9 C C3' BMP . . . C 2 5.873 -36.286 10.746 1 23.07 ? C3' BMP 301 A 1 
HETATM 10 O O3' BMP . . . C 2 7.143 -36.158 11.385 1 21.55 ? O3' BMP 301 A 1 
HETATM 11 C C2' BMP . . . C 2 4.919 -37.077 11.647 1 24.03 ? C2' BMP 301 A 1 
HETATM 12 O O2' BMP . . . C 2 5.536 -38.143 12.373 1 21.69 ? O2' BMP 301 A 1 
HETATM 13 C C1' BMP . . . C 2 4.393 -35.98 12.58 1 17.99 ? C1' BMP 301 A 1 
HETATM 14 N N1 BMP . . . C 2 3.038 -36.201 13.079 1 18.18 ? N1 BMP 301 A 1 
HETATM 15 C C2 BMP . . . C 2 1.986 -36.341 12.261 1 17.97 ? C2 BMP 301 A 1 
HETATM 16 O O2 BMP . . . C 2 2.146 -36.361 11.056 1 19.24 ? O2 BMP 301 A 1 
HETATM 17 N N3 BMP . . . C 2 0.738 -36.498 12.764 1 17.71 ? N3 BMP 301 A 1 
HETATM 18 C C4 BMP . . . C 2 0.534 -36.485 14.099 1 21.32 ? C4 BMP 301 A 1 
HETATM 19 O O4 BMP . . . C 2 -0.599 -36.615 14.539 1 20.37 ? O4 BMP 301 A 1 
HETATM 20 C C5 BMP . . . C 2 1.625 -36.299 14.972 1 17.44 ? C5 BMP 301 A 1 
HETATM 21 C C6 BMP . . . C 2 2.873 -36.155 14.423 1 14.36 ? C6 BMP 301 A 1 
HETATM 22 O O1 BMP . . . C 2 3.966 -35.951 15.176 1 21.47 ? O1 BMP 301 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#