data_4FXA # _model_server_result.job_id KiN4t2uifgNiODvtbWkV4w _model_server_result.datetime_utc '2024-10-22 09:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4FXA # _exptl.entry_id 4FXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FXA _cell.length_a 130.357 _cell.length_b 130.357 _cell.length_c 40.022 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.437 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 267 n n C1 O1 NAG sing 268 n n C1 O5 NAG sing 269 n n C1 H1 NAG sing 270 n n C2 C3 NAG sing 271 n n C2 N2 NAG sing 272 n n C2 H2 NAG sing 273 n n C3 C4 NAG sing 274 n n C3 O3 NAG sing 275 n n C3 H3 NAG sing 276 n n C4 C5 NAG sing 277 n n C4 O4 NAG sing 278 n n C4 H4 NAG sing 279 n n C5 C6 NAG sing 280 n n C5 O5 NAG sing 281 n n C5 H5 NAG sing 282 n n C6 O6 NAG sing 283 n n C6 H61 NAG sing 284 n n C6 H62 NAG sing 285 n n C7 C8 NAG sing 286 n n C7 N2 NAG sing 287 n n C7 O7 NAG doub 288 n n C8 H81 NAG sing 289 n n C8 H82 NAG sing 290 n n C8 H83 NAG sing 291 n n N2 HN2 NAG sing 292 n n O1 HO1 NAG sing 293 n n O3 HO3 NAG sing 294 n n O4 HO4 NAG sing 295 n n O6 HO6 NAG sing 296 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4FXA _atom_sites.fract_transf_matrix[1][1] 0.007671 _atom_sites.fract_transf_matrix[1][2] 0.004429 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 2 GOL A 1 302 2 GOL GOL . D 3 AAG A 1 303 9 AAG ZZZ . E 4 NAG A 1 304 1 NAG NAG . F 5 HOH A 1 401 7579 HOH HOH . F 5 HOH A 2 402 7581 HOH HOH . F 5 HOH A 3 403 7582 HOH HOH . F 5 HOH A 4 404 7583 HOH HOH . F 5 HOH A 5 405 7584 HOH HOH . F 5 HOH A 6 406 7585 HOH HOH . F 5 HOH A 7 407 7586 HOH HOH . F 5 HOH A 8 408 7587 HOH HOH . F 5 HOH A 9 409 7588 HOH HOH . F 5 HOH A 10 410 7590 HOH HOH . F 5 HOH A 11 411 7591 HOH HOH . F 5 HOH A 12 412 7592 HOH HOH . F 5 HOH A 13 413 7594 HOH HOH . F 5 HOH A 14 414 7595 HOH HOH . F 5 HOH A 15 415 7596 HOH HOH . F 5 HOH A 16 416 7597 HOH HOH . F 5 HOH A 17 417 7598 HOH HOH . F 5 HOH A 18 418 7600 HOH HOH . F 5 HOH A 19 419 7602 HOH HOH . F 5 HOH A 20 420 7603 HOH HOH . F 5 HOH A 21 421 7604 HOH HOH . F 5 HOH A 22 422 7605 HOH HOH . F 5 HOH A 23 423 7606 HOH HOH . F 5 HOH A 24 424 7607 HOH HOH . F 5 HOH A 25 425 7608 HOH HOH . F 5 HOH A 26 426 7609 HOH HOH . F 5 HOH A 27 427 7610 HOH HOH . F 5 HOH A 28 428 7611 HOH HOH . F 5 HOH A 29 429 7612 HOH HOH . F 5 HOH A 30 430 7613 HOH HOH . F 5 HOH A 31 431 7614 HOH HOH . F 5 HOH A 32 432 7615 HOH HOH . F 5 HOH A 33 433 7616 HOH HOH . F 5 HOH A 34 434 7617 HOH HOH . F 5 HOH A 35 435 7618 HOH HOH . F 5 HOH A 36 436 7619 HOH HOH . F 5 HOH A 37 437 7620 HOH HOH . F 5 HOH A 38 438 7621 HOH HOH . F 5 HOH A 39 439 7622 HOH HOH . F 5 HOH A 40 440 7623 HOH HOH . F 5 HOH A 41 441 7625 HOH HOH . F 5 HOH A 42 442 7626 HOH HOH . F 5 HOH A 43 443 7627 HOH HOH . F 5 HOH A 44 444 7628 HOH HOH . F 5 HOH A 45 445 7629 HOH HOH . F 5 HOH A 46 446 7630 HOH HOH . F 5 HOH A 47 447 7631 HOH HOH . F 5 HOH A 48 448 7632 HOH HOH . F 5 HOH A 49 449 7633 HOH HOH . F 5 HOH A 50 450 7635 HOH HOH . F 5 HOH A 51 451 7637 HOH HOH . F 5 HOH A 52 452 7638 HOH HOH . F 5 HOH A 53 453 7639 HOH HOH . F 5 HOH A 54 454 7640 HOH HOH . F 5 HOH A 55 455 7641 HOH HOH . F 5 HOH A 56 456 7642 HOH HOH . F 5 HOH A 57 457 7643 HOH HOH . F 5 HOH A 58 458 7644 HOH HOH . F 5 HOH A 59 459 7645 HOH HOH . F 5 HOH A 60 460 7646 HOH HOH . F 5 HOH A 61 461 7647 HOH HOH . F 5 HOH A 62 462 7648 HOH HOH . F 5 HOH A 63 463 7649 HOH HOH . F 5 HOH A 64 464 7650 HOH HOH . F 5 HOH A 65 465 7652 HOH HOH . F 5 HOH A 66 466 7653 HOH HOH . F 5 HOH A 67 467 7655 HOH HOH . F 5 HOH A 68 468 7657 HOH HOH . F 5 HOH A 69 469 7658 HOH HOH . F 5 HOH A 70 470 7660 HOH HOH . F 5 HOH A 71 471 7661 HOH HOH . F 5 HOH A 72 472 7662 HOH HOH . F 5 HOH A 73 473 7663 HOH HOH . F 5 HOH A 74 474 7665 HOH HOH . F 5 HOH A 75 475 7666 HOH HOH . F 5 HOH A 76 476 7667 HOH HOH . F 5 HOH A 77 477 7668 HOH HOH . F 5 HOH A 78 478 7669 HOH HOH . F 5 HOH A 79 479 7671 HOH HOH . F 5 HOH A 80 480 7672 HOH HOH . F 5 HOH A 81 481 7673 HOH HOH . F 5 HOH A 82 482 7674 HOH HOH . F 5 HOH A 83 483 7675 HOH HOH . F 5 HOH A 84 484 7676 HOH HOH . F 5 HOH A 85 485 7677 HOH HOH . F 5 HOH A 86 486 7678 HOH HOH . F 5 HOH A 87 487 7679 HOH HOH . F 5 HOH A 88 488 7681 HOH HOH . F 5 HOH A 89 489 7682 HOH HOH . F 5 HOH A 90 490 7683 HOH HOH . F 5 HOH A 91 491 7686 HOH HOH . F 5 HOH A 92 492 7687 HOH HOH . F 5 HOH A 93 493 7688 HOH HOH . F 5 HOH A 94 494 7689 HOH HOH . F 5 HOH A 95 495 7690 HOH HOH . F 5 HOH A 96 496 7691 HOH HOH . F 5 HOH A 97 497 7693 HOH HOH . F 5 HOH A 98 498 7694 HOH HOH . F 5 HOH A 99 499 7695 HOH HOH . F 5 HOH A 100 500 7696 HOH HOH . F 5 HOH A 101 501 7698 HOH HOH . F 5 HOH A 102 502 7700 HOH HOH . F 5 HOH A 103 503 7701 HOH HOH . F 5 HOH A 104 504 7702 HOH HOH . F 5 HOH A 105 505 7703 HOH HOH . F 5 HOH A 106 506 7704 HOH HOH . F 5 HOH A 107 507 7706 HOH HOH . F 5 HOH A 108 508 7707 HOH HOH . F 5 HOH A 109 509 7708 HOH HOH . F 5 HOH A 110 510 7709 HOH HOH . F 5 HOH A 111 511 7710 HOH HOH . F 5 HOH A 112 512 7711 HOH HOH . F 5 HOH A 113 513 7712 HOH HOH . F 5 HOH A 114 514 7713 HOH HOH . F 5 HOH A 115 515 7714 HOH HOH . F 5 HOH A 116 516 7715 HOH HOH . F 5 HOH A 117 517 7716 HOH HOH . F 5 HOH A 118 518 7718 HOH HOH . F 5 HOH A 119 519 7719 HOH HOH . F 5 HOH A 120 520 7721 HOH HOH . F 5 HOH A 121 521 7723 HOH HOH . F 5 HOH A 122 522 7724 HOH HOH . F 5 HOH A 123 523 7726 HOH HOH . F 5 HOH A 124 524 7727 HOH HOH . F 5 HOH A 125 525 7730 HOH HOH . F 5 HOH A 126 526 7732 HOH HOH . F 5 HOH A 127 527 7733 HOH HOH . F 5 HOH A 128 528 7734 HOH HOH . F 5 HOH A 129 529 7735 HOH HOH . F 5 HOH A 130 530 7736 HOH HOH . F 5 HOH A 131 531 7737 HOH HOH . F 5 HOH A 132 532 7738 HOH HOH . F 5 HOH A 133 533 7739 HOH HOH . F 5 HOH A 134 534 7740 HOH HOH . F 5 HOH A 135 535 7741 HOH HOH . F 5 HOH A 136 536 7744 HOH HOH . F 5 HOH A 137 537 7745 HOH HOH . F 5 HOH A 138 538 7748 HOH HOH . F 5 HOH A 139 539 7749 HOH HOH . F 5 HOH A 140 540 7750 HOH HOH . F 5 HOH A 141 541 7751 HOH HOH . F 5 HOH A 142 542 7752 HOH HOH . F 5 HOH A 143 543 7753 HOH HOH . F 5 HOH A 144 544 7754 HOH HOH . F 5 HOH A 145 545 7755 HOH HOH . F 5 HOH A 146 546 7756 HOH HOH . F 5 HOH A 147 547 7758 HOH HOH . F 5 HOH A 148 548 7759 HOH HOH . F 5 HOH A 149 549 7760 HOH HOH . F 5 HOH A 150 550 7761 HOH HOH . F 5 HOH A 151 551 7762 HOH HOH . F 5 HOH A 152 552 7763 HOH HOH . F 5 HOH A 153 553 7764 HOH HOH . F 5 HOH A 154 554 7766 HOH HOH . F 5 HOH A 155 555 7769 HOH HOH . F 5 HOH A 156 556 7770 HOH HOH . F 5 HOH A 157 557 7771 HOH HOH . F 5 HOH A 158 558 7772 HOH HOH . F 5 HOH A 159 559 7775 HOH HOH . F 5 HOH A 160 560 7776 HOH HOH . F 5 HOH A 161 561 7780 HOH HOH . F 5 HOH A 162 562 7781 HOH HOH . F 5 HOH A 163 563 1 HOH HOH . F 5 HOH A 164 564 2 HOH HOH . F 5 HOH A 165 565 3 HOH HOH . F 5 HOH A 166 566 4 HOH HOH . F 5 HOH A 167 567 5 HOH HOH . F 5 HOH A 168 568 1 HOH HOH . F 5 HOH A 169 569 2 HOH HOH . F 5 HOH A 170 570 3 HOH HOH . F 5 HOH A 171 571 4 HOH HOH . F 5 HOH A 172 572 6 HOH HOH . F 5 HOH A 173 573 7 HOH HOH . F 5 HOH A 174 574 9 HOH HOH . F 5 HOH A 175 575 10 HOH HOH . F 5 HOH A 176 576 12 HOH HOH . F 5 HOH A 177 577 13 HOH HOH . F 5 HOH A 178 578 14 HOH HOH . F 5 HOH A 179 579 15 HOH HOH . F 5 HOH A 180 580 16 HOH HOH . F 5 HOH A 181 581 17 HOH HOH . F 5 HOH A 182 582 18 HOH HOH . F 5 HOH A 183 583 20 HOH HOH . F 5 HOH A 184 584 21 HOH HOH . F 5 HOH A 185 585 23 HOH HOH . F 5 HOH A 186 586 24 HOH HOH . F 5 HOH A 187 587 25 HOH HOH . F 5 HOH A 188 588 29 HOH HOH . F 5 HOH A 189 589 30 HOH HOH . F 5 HOH A 190 590 31 HOH HOH . F 5 HOH A 191 591 33 HOH HOH . F 5 HOH A 192 592 34 HOH HOH . F 5 HOH A 193 593 35 HOH HOH . F 5 HOH A 194 594 1 HOH HOH . F 5 HOH A 195 595 2 HOH HOH . F 5 HOH A 196 596 6 HOH HOH . F 5 HOH A 197 597 8 HOH HOH . F 5 HOH A 198 598 2 HOH HOH . F 5 HOH A 199 599 1 HOH HOH . F 5 HOH A 200 600 3 HOH HOH . F 5 HOH A 201 601 4 HOH HOH . F 5 HOH A 202 602 5 HOH HOH . F 5 HOH A 203 603 6 HOH HOH . F 5 HOH A 204 604 7 HOH HOH . F 5 HOH A 205 605 8 HOH HOH . F 5 HOH A 206 606 1 HOH HOH . F 5 HOH A 207 607 2 HOH HOH . F 5 HOH A 208 608 1 HOH HOH . F 5 HOH A 209 609 1 HOH HOH . F 5 HOH A 210 610 2 HOH HOH . F 5 HOH A 211 611 3 HOH HOH . F 5 HOH A 212 612 4 HOH HOH . F 5 HOH A 213 613 5 HOH HOH . F 5 HOH A 214 614 7 HOH HOH . F 5 HOH A 215 615 8 HOH HOH . F 5 HOH A 216 616 9 HOH HOH . F 5 HOH A 217 617 10 HOH HOH . F 5 HOH A 218 618 12 HOH HOH . F 5 HOH A 219 619 13 HOH HOH . F 5 HOH A 220 620 14 HOH HOH . F 5 HOH A 221 621 17 HOH HOH . F 5 HOH A 222 622 18 HOH HOH . F 5 HOH A 223 623 19 HOH HOH . F 5 HOH A 224 624 21 HOH HOH . F 5 HOH A 225 625 1 HOH HOH . F 5 HOH A 226 626 2 HOH HOH . F 5 HOH A 227 627 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 9.639 -42.23 -31.14 1 55.2 ? C1 NAG 304 A 1 HETATM 2 C C2 NAG . . . E 4 10.042 -42.365 -32.602 1 62.77 ? C2 NAG 304 A 1 HETATM 3 C C3 NAG . . . E 4 11.528 -42.097 -32.84 1 63.79 ? C3 NAG 304 A 1 HETATM 4 C C4 NAG . . . E 4 12.039 -40.882 -32.053 1 65.17 ? C4 NAG 304 A 1 HETATM 5 C C5 NAG . . . E 4 11.628 -40.944 -30.579 1 64.64 ? C5 NAG 304 A 1 HETATM 6 C C6 NAG . . . E 4 12.141 -39.677 -29.815 1 65.74 ? C6 NAG 304 A 1 HETATM 7 C C7 NAG . . . E 4 8.623 -44.076 -33.722 1 70.38 ? C7 NAG 304 A 1 HETATM 8 C C8 NAG . . . E 4 8.386 -45.565 -33.943 1 69.11 ? C8 NAG 304 A 1 HETATM 9 N N2 NAG . . . E 4 9.697 -43.752 -32.916 1 64.56 ? N2 NAG 304 A 1 HETATM 10 O O3 NAG . . . E 4 11.755 -41.929 -34.225 1 62.39 ? O3 NAG 304 A 1 HETATM 11 O O4 NAG . . . E 4 13.454 -40.888 -32.108 1 66.11 ? O4 NAG 304 A 1 HETATM 12 O O5 NAG . . . E 4 10.208 -41.07 -30.541 1 62.16 ? O5 NAG 304 A 1 HETATM 13 O O6 NAG . . . E 4 11.44 -38.477 -30.213 1 72.62 ? O6 NAG 304 A 1 HETATM 14 O O7 NAG . . . E 4 7.903 -43.213 -34.277 1 70.6 ? O7 NAG 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #