data_4FXR
#
_model_server_result.job_id            QVae7nNLToh9T7ZbYfrS5g 
_model_server_result.datetime_utc      '2024-11-23 13:47:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4fxr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
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_entry.id    4FXR 
#
_exptl.entry_id    4FXR 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              340.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "6-HYDROXYURIDINE-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.95 
_cell.angle_gamma         90 
_cell.entry_id            4FXR 
_cell.length_a            54.353 
_cell.length_b            63.065 
_cell.length_c            54.513 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4FXR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H13 N2 O10 P' 
_chem_comp.formula_weight    340.181 
_chem_comp.id                BMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "6-HYDROXYURIDINE-5'-PHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 BMP doub 70 n n 
P OP2 BMP sing 71 n n 
P OP3 BMP sing 72 n n 
P O5' BMP sing 73 n n 
OP2 HOP2 BMP sing 74 n n 
OP3 HOP3 BMP sing 75 n n 
O5' C5' BMP sing 76 n n 
C5' C4' BMP sing 77 n n 
C5' H5' BMP sing 78 n n 
C5' "H5''" BMP sing 79 n n 
C4' O4' BMP sing 80 n n 
C4' C3' BMP sing 81 n n 
C4' H4' BMP sing 82 n n 
O4' C1' BMP sing 83 n n 
C3' O3' BMP sing 84 n n 
C3' C2' BMP sing 85 n n 
C3' H3' BMP sing 86 n n 
O3' HO3' BMP sing 87 n n 
C2' O2' BMP sing 88 n n 
C2' C1' BMP sing 89 n n 
C2' H2' BMP sing 90 n n 
O2' HO2' BMP sing 91 n n 
C1' N1 BMP sing 92 n n 
C1' H1' BMP sing 93 n n 
N1 C2 BMP sing 94 n n 
N1 C6 BMP sing 95 n n 
C2 O2 BMP doub 96 n n 
C2 N3 BMP sing 97 n n 
N3 C4 BMP sing 98 n n 
N3 HN3 BMP sing 99 n n 
C4 O4 BMP doub 100 n n 
C4 C5 BMP sing 101 n n 
C5 C6 BMP doub 102 n n 
C5 H51 BMP sing 103 n n 
C6 O1 BMP sing 104 n n 
O1 HO1 BMP sing 105 n n 
#
_atom_sites.entry_id                     4FXR 
_atom_sites.fract_transf_matrix[1][1]    0.018398 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002897 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BMP A 1 301 229 BMP BMP . 
D 2 BMP B 1 301 229 BMP BMP . 
E 3 HOH A 1 401 1 HOH HOH . 
E 3 HOH A 2 402 2 HOH HOH . 
E 3 HOH A 3 403 6 HOH HOH . 
E 3 HOH A 4 404 7 HOH HOH . 
E 3 HOH A 5 405 9 HOH HOH . 
E 3 HOH A 6 406 13 HOH HOH . 
E 3 HOH A 7 407 14 HOH HOH . 
E 3 HOH A 8 408 15 HOH HOH . 
E 3 HOH A 9 409 16 HOH HOH . 
E 3 HOH A 10 410 19 HOH HOH . 
E 3 HOH A 11 411 20 HOH HOH . 
E 3 HOH A 12 412 22 HOH HOH . 
E 3 HOH A 13 413 25 HOH HOH . 
E 3 HOH A 14 414 27 HOH HOH . 
E 3 HOH A 15 415 28 HOH HOH . 
E 3 HOH A 16 416 33 HOH HOH . 
E 3 HOH A 17 417 34 HOH HOH . 
E 3 HOH A 18 418 35 HOH HOH . 
E 3 HOH A 19 419 36 HOH HOH . 
E 3 HOH A 20 420 37 HOH HOH . 
E 3 HOH A 21 421 41 HOH HOH . 
E 3 HOH A 22 422 45 HOH HOH . 
E 3 HOH A 23 423 46 HOH HOH . 
E 3 HOH A 24 424 49 HOH HOH . 
E 3 HOH A 25 425 51 HOH HOH . 
E 3 HOH A 26 426 55 HOH HOH . 
E 3 HOH A 27 427 57 HOH HOH . 
E 3 HOH A 28 428 58 HOH HOH . 
E 3 HOH A 29 429 60 HOH HOH . 
E 3 HOH A 30 430 62 HOH HOH . 
E 3 HOH A 31 431 64 HOH HOH . 
E 3 HOH A 32 432 66 HOH HOH . 
E 3 HOH A 33 433 67 HOH HOH . 
E 3 HOH A 34 434 69 HOH HOH . 
E 3 HOH A 35 435 71 HOH HOH . 
E 3 HOH A 36 436 72 HOH HOH . 
E 3 HOH A 37 437 74 HOH HOH . 
E 3 HOH A 38 438 75 HOH HOH . 
E 3 HOH A 39 439 76 HOH HOH . 
F 3 HOH B 1 401 3 HOH HOH . 
F 3 HOH B 2 402 4 HOH HOH . 
F 3 HOH B 3 403 5 HOH HOH . 
F 3 HOH B 4 404 8 HOH HOH . 
F 3 HOH B 5 405 10 HOH HOH . 
F 3 HOH B 6 406 11 HOH HOH . 
F 3 HOH B 7 407 12 HOH HOH . 
F 3 HOH B 8 408 17 HOH HOH . 
F 3 HOH B 9 409 18 HOH HOH . 
F 3 HOH B 10 410 21 HOH HOH . 
F 3 HOH B 11 411 23 HOH HOH . 
F 3 HOH B 12 412 24 HOH HOH . 
F 3 HOH B 13 413 26 HOH HOH . 
F 3 HOH B 14 414 29 HOH HOH . 
F 3 HOH B 15 415 30 HOH HOH . 
F 3 HOH B 16 416 31 HOH HOH . 
F 3 HOH B 17 417 32 HOH HOH . 
F 3 HOH B 18 418 38 HOH HOH . 
F 3 HOH B 19 419 39 HOH HOH . 
F 3 HOH B 20 420 42 HOH HOH . 
F 3 HOH B 21 421 43 HOH HOH . 
F 3 HOH B 22 422 44 HOH HOH . 
F 3 HOH B 23 423 47 HOH HOH . 
F 3 HOH B 24 424 48 HOH HOH . 
F 3 HOH B 25 425 50 HOH HOH . 
F 3 HOH B 26 426 52 HOH HOH . 
F 3 HOH B 27 427 53 HOH HOH . 
F 3 HOH B 28 428 54 HOH HOH . 
F 3 HOH B 29 429 56 HOH HOH . 
F 3 HOH B 30 430 59 HOH HOH . 
F 3 HOH B 31 431 68 HOH HOH . 
F 3 HOH B 32 432 70 HOH HOH . 
F 3 HOH B 33 433 73 HOH HOH . 
F 3 HOH B 34 434 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P BMP . . . D 2 20.379 9.489 4.785 1 28.93 ? P BMP 301 B 1 
HETATM 2 O OP1 BMP . . . D 2 21.343 8.953 3.801 1 25.62 ? OP1 BMP 301 B 1 
HETATM 3 O OP2 BMP . . . D 2 19.581 8.471 5.743 1 36.46 ? OP2 BMP 301 B 1 
HETATM 4 O OP3 BMP . . . D 2 21.194 10.454 5.772 1 28.28 ? OP3 BMP 301 B 1 
HETATM 5 O O5' BMP . . . D 2 19.352 10.472 4.058 1 26.03 ? O5' BMP 301 B 1 
HETATM 6 C C5' BMP . . . D 2 19.762 11.265 2.946 1 24.8 ? C5' BMP 301 B 1 
HETATM 7 C C4' BMP . . . D 2 18.616 12.088 2.407 1 28.83 ? C4' BMP 301 B 1 
HETATM 8 O O4' BMP . . . D 2 19.111 12.993 1.38 1 27.09 ? O4' BMP 301 B 1 
HETATM 9 C C3' BMP . . . D 2 17.481 11.288 1.767 1 22.09 ? C3' BMP 301 B 1 
HETATM 10 O O3' BMP . . . D 2 16.243 11.951 2.023 1 23 ? O3' BMP 301 B 1 
HETATM 11 C C2' BMP . . . D 2 17.801 11.365 0.276 1 23.09 ? C2' BMP 301 B 1 
HETATM 12 O O2' BMP . . . D 2 16.676 11.24 -0.578 1 25.7 ? O2' BMP 301 B 1 
HETATM 13 C C1' BMP . . . D 2 18.446 12.755 0.158 1 24.4 ? C1' BMP 301 B 1 
HETATM 14 N N1 BMP . . . D 2 19.428 12.868 -0.927 1 21.14 ? N1 BMP 301 B 1 
HETATM 15 C C2 BMP . . . D 2 20.504 12.046 -1.032 1 20.05 ? C2 BMP 301 B 1 
HETATM 16 O O2 BMP . . . D 2 20.72 11.143 -0.242 1 22.5 ? O2 BMP 301 B 1 
HETATM 17 N N3 BMP . . . D 2 21.392 12.209 -2.028 1 19.76 ? N3 BMP 301 B 1 
HETATM 18 C C4 BMP . . . D 2 21.238 13.172 -2.954 1 24.41 ? C4 BMP 301 B 1 
HETATM 19 O O4 BMP . . . D 2 22.06 13.287 -3.854 1 23.83 ? O4 BMP 301 B 1 
HETATM 20 C C5 BMP . . . D 2 20.135 14.053 -2.872 1 20.09 ? C5 BMP 301 B 1 
HETATM 21 C C6 BMP . . . D 2 19.252 13.88 -1.845 1 23.94 ? C6 BMP 301 B 1 
HETATM 22 O O1 BMP . . . D 2 18.194 14.703 -1.727 1 21.56 ? O1 BMP 301 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
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