data_4FXZ # _model_server_result.job_id sCLUYXLxVLsMM0V4vsWKqA _model_server_result.datetime_utc '2024-11-28 16:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 4FXZ # _exptl.entry_id 4FXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.308 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.95 _cell.angle_gamma 90 _cell.entry_id 4FXZ _cell.length_a 122.14 _cell.length_b 89.888 _cell.length_c 81.262 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 103.929131 0 79.195182 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc11 B O LEU . A LEU 601 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? # _chem_comp.formula 'C11 H24' _chem_comp.formula_weight 156.308 _chem_comp.id UND _chem_comp.mon_nstd_flag . _chem_comp.name UNDECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UND sing 351 n n C1 H11 UND sing 352 n n C1 H12 UND sing 353 n n C1 H13 UND sing 354 n n C2 C3 UND sing 355 n n C2 H21 UND sing 356 n n C2 H22 UND sing 357 n n C3 C4 UND sing 358 n n C3 H31 UND sing 359 n n C3 H32 UND sing 360 n n C4 C5 UND sing 361 n n C4 H41 UND sing 362 n n C4 H42 UND sing 363 n n C5 C6 UND sing 364 n n C5 H51 UND sing 365 n n C5 H52 UND sing 366 n n C6 C7 UND sing 367 n n C6 H61 UND sing 368 n n C6 H62 UND sing 369 n n C7 C8 UND sing 370 n n C7 H71 UND sing 371 n n C7 H72 UND sing 372 n n C8 C9 UND sing 373 n n C8 H81 UND sing 374 n n C8 H82 UND sing 375 n n C9 C10 UND sing 376 n n C9 H91 UND sing 377 n n C9 H92 UND sing 378 n n C10 C11 UND sing 379 n n C10 H101 UND sing 380 n n C10 H102 UND sing 381 n n C11 H111 UND sing 382 n n C11 H112 UND sing 383 n n C11 H113 UND sing 384 n n # _atom_sites.entry_id 4FXZ _atom_sites.fract_transf_matrix[1][1] 0.008187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001883 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LEU A 1 601 601 LEU LEU . C 3 NA A 1 602 752 NA NA . D 3 NA A 1 603 751 NA NA . E 4 ACT A 1 604 1 ACT ACT . F 5 UND A 1 605 1 UND UND . G 6 HOH A 1 701 1 HOH HOH . G 6 HOH A 2 702 2 HOH HOH . G 6 HOH A 3 703 3 HOH HOH . G 6 HOH A 4 704 4 HOH HOH . G 6 HOH A 5 705 5 HOH HOH . G 6 HOH A 6 706 6 HOH HOH . G 6 HOH A 7 707 7 HOH HOH . G 6 HOH A 8 708 8 HOH HOH . G 6 HOH A 9 709 9 HOH HOH . G 6 HOH A 10 710 10 HOH HOH . G 6 HOH A 11 711 11 HOH HOH . G 6 HOH A 12 712 12 HOH HOH . G 6 HOH A 13 713 13 HOH HOH . G 6 HOH A 14 714 14 HOH HOH . G 6 HOH A 15 715 15 HOH HOH . G 6 HOH A 16 716 16 HOH HOH . G 6 HOH A 17 717 17 HOH HOH . G 6 HOH A 18 718 18 HOH HOH . G 6 HOH A 19 719 19 HOH HOH . G 6 HOH A 20 720 20 HOH HOH . G 6 HOH A 21 721 21 HOH HOH . G 6 HOH A 22 722 22 HOH HOH . G 6 HOH A 23 723 23 HOH HOH . G 6 HOH A 24 724 24 HOH HOH . G 6 HOH A 25 725 25 HOH HOH . G 6 HOH A 26 726 26 HOH HOH . G 6 HOH A 27 727 27 HOH HOH . G 6 HOH A 28 728 28 HOH HOH . G 6 HOH A 29 729 29 HOH HOH . G 6 HOH A 30 730 30 HOH HOH . G 6 HOH A 31 731 31 HOH HOH . G 6 HOH A 32 732 32 HOH HOH . G 6 HOH A 33 733 33 HOH HOH . G 6 HOH A 34 734 34 HOH HOH . G 6 HOH A 35 735 35 HOH HOH . G 6 HOH A 36 736 36 HOH HOH . G 6 HOH A 37 737 38 HOH HOH . G 6 HOH A 38 738 39 HOH HOH . G 6 HOH A 39 739 40 HOH HOH . G 6 HOH A 40 740 41 HOH HOH . G 6 HOH A 41 741 44 HOH HOH . G 6 HOH A 42 742 45 HOH HOH . G 6 HOH A 43 743 46 HOH HOH . G 6 HOH A 44 744 47 HOH HOH . G 6 HOH A 45 745 48 HOH HOH . G 6 HOH A 46 746 49 HOH HOH . G 6 HOH A 47 747 50 HOH HOH . G 6 HOH A 48 748 51 HOH HOH . G 6 HOH A 49 749 52 HOH HOH . G 6 HOH A 50 750 53 HOH HOH . G 6 HOH A 51 751 54 HOH HOH . G 6 HOH A 52 752 55 HOH HOH . G 6 HOH A 53 753 56 HOH HOH . G 6 HOH A 54 754 57 HOH HOH . G 6 HOH A 55 755 58 HOH HOH . G 6 HOH A 56 756 59 HOH HOH . G 6 HOH A 57 757 60 HOH HOH . G 6 HOH A 58 758 62 HOH HOH . G 6 HOH A 59 759 63 HOH HOH . G 6 HOH A 60 760 64 HOH HOH . G 6 HOH A 61 761 65 HOH HOH . G 6 HOH A 62 762 66 HOH HOH . G 6 HOH A 63 763 67 HOH HOH . G 6 HOH A 64 764 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UND . . . F 5 51.414 4.623 0.263 1 58.96 ? C1 UND 605 A 1 HETATM 2 C C2 UND . . . F 5 51.125 3.552 -0.734 1 63.94 ? C2 UND 605 A 1 HETATM 3 C C3 UND . . . F 5 51.416 2.148 -0.33 1 60.04 ? C3 UND 605 A 1 HETATM 4 C C4 UND . . . F 5 51.37 1.09 -1.378 1 64.52 ? C4 UND 605 A 1 HETATM 5 C C5 UND . . . F 5 51.524 -0.319 -0.915 1 60.78 ? C5 UND 605 A 1 HETATM 6 C C6 UND . . . F 5 51.768 -1.376 -1.936 1 65.95 ? C6 UND 605 A 1 HETATM 7 C C7 UND . . . F 5 52.107 -2.734 -1.427 1 62.85 ? C7 UND 605 A 1 HETATM 8 C C8 UND . . . F 5 52.05 -3.875 -2.386 1 69.47 ? C8 UND 605 A 1 HETATM 9 C C9 UND . . . F 5 51.971 -5.245 -1.804 1 67.91 ? C9 UND 605 A 1 HETATM 10 C C10 UND . . . F 5 51.967 -6.401 -2.744 1 74.16 ? C10 UND 605 A 1 HETATM 11 C C11 UND . . . F 5 51.736 -7.755 -2.164 1 69.32 ? C11 UND 605 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #