data_4FYH # _model_server_result.job_id m62xT_k7_jMW_ftzlSRcig _model_server_result.datetime_utc '2024-11-24 03:56:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 4FYH # _exptl.entry_id 4FYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen-3-amine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FYH _cell.length_a 92.953 _cell.length_b 119.002 _cell.length_c 57.769 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,N,O 1 1 C,D,I,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C13 H17 N6 O7 P' _chem_comp.formula_weight 400.284 _chem_comp.id TR5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Triciribine phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' TR5 sing 310 n n C2 N3 TR5 doub 311 n y C2 N1 TR5 sing 312 n y O3' C3' TR5 sing 313 n n N3 C4 TR5 sing 314 n y N1 C6 TR5 doub 315 n y C2' C3' TR5 sing 316 n n C2' C1' TR5 sing 317 n n C3' C4' TR5 sing 318 n n C4 C5 TR5 doub 319 n y C4 N9 TR5 sing 320 n y C6 C5 TR5 sing 321 n y C6 N61 TR5 sing 322 n n C62 N61 TR5 sing 323 n n C1' N9 TR5 sing 324 n n C1' O4' TR5 sing 325 n n C5 C7 TR5 sing 326 n y N9 C8 TR5 sing 327 n y N61 N71 TR5 sing 328 n n C4' C5' TR5 sing 329 n n C4' O4' TR5 sing 330 n n C5' O5' TR5 sing 331 n n C7 C8 TR5 doub 332 n y C7 C72 TR5 sing 333 n n N71 C72 TR5 doub 334 n n C72 N73 TR5 sing 335 n n O5' PB TR5 sing 336 n n O2 PB TR5 doub 337 n n O1 PB TR5 sing 338 n n PB O3 TR5 sing 339 n n O3 H1 TR5 sing 340 n n O1 H2 TR5 sing 341 n n C5' H3 TR5 sing 342 n n C5' H4 TR5 sing 343 n n C4' H5 TR5 sing 344 n n C3' H6 TR5 sing 345 n n O3' H7 TR5 sing 346 n n C2' H8 TR5 sing 347 n n O2' H9 TR5 sing 348 n n C1' H10 TR5 sing 349 n n C8 H11 TR5 sing 350 n n C2 H12 TR5 sing 351 n n C62 H13 TR5 sing 352 n n C62 H14 TR5 sing 353 n n C62 H15 TR5 sing 354 n n N73 H16 TR5 sing 355 n n N73 H17 TR5 sing 356 n n # _atom_sites.entry_id 4FYH _atom_sites.fract_transf_matrix[1][1] 0.010758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TR5 A 1 201 201 TR5 TRB . F 2 TR5 B 1 201 201 TR5 TRB . G 3 SO4 B 1 202 1 SO4 SO4 . H 3 SO4 B 1 203 3 SO4 SO4 . I 2 TR5 C 1 201 201 TR5 TRB . J 3 SO4 C 1 202 4 SO4 SO4 . K 2 TR5 D 1 201 201 TR5 TRB . L 3 SO4 D 1 202 2 SO4 SO4 . M 3 SO4 D 1 203 5 SO4 SO4 . N 4 HOH A 1 301 1 HOH HOH . N 4 HOH A 2 302 2 HOH HOH . N 4 HOH A 3 303 3 HOH HOH . N 4 HOH A 4 304 4 HOH HOH . N 4 HOH A 5 305 5 HOH HOH . N 4 HOH A 6 306 6 HOH HOH . N 4 HOH A 7 307 7 HOH HOH . N 4 HOH A 8 308 8 HOH HOH . N 4 HOH A 9 309 9 HOH HOH . N 4 HOH A 10 310 10 HOH HOH . N 4 HOH A 11 311 11 HOH HOH . N 4 HOH A 12 312 13 HOH HOH . N 4 HOH A 13 313 14 HOH HOH . N 4 HOH A 14 314 15 HOH HOH . N 4 HOH A 15 315 82 HOH HOH . N 4 HOH A 16 316 84 HOH HOH . N 4 HOH A 17 317 85 HOH HOH . N 4 HOH A 18 318 86 HOH HOH . N 4 HOH A 19 319 94 HOH HOH . N 4 HOH A 20 320 95 HOH HOH . N 4 HOH A 21 321 122 HOH HOH . N 4 HOH A 22 322 123 HOH HOH . O 4 HOH B 1 301 12 HOH HOH . O 4 HOH B 2 302 16 HOH HOH . O 4 HOH B 3 303 17 HOH HOH . O 4 HOH B 4 304 18 HOH HOH . O 4 HOH B 5 305 19 HOH HOH . O 4 HOH B 6 306 20 HOH HOH . O 4 HOH B 7 307 21 HOH HOH . O 4 HOH B 8 308 22 HOH HOH . O 4 HOH B 9 309 23 HOH HOH . O 4 HOH B 10 310 24 HOH HOH . O 4 HOH B 11 311 25 HOH HOH . O 4 HOH B 12 312 26 HOH HOH . O 4 HOH B 13 313 27 HOH HOH . O 4 HOH B 14 314 28 HOH HOH . O 4 HOH B 15 315 29 HOH HOH . O 4 HOH B 16 316 30 HOH HOH . O 4 HOH B 17 317 31 HOH HOH . O 4 HOH B 18 318 32 HOH HOH . O 4 HOH B 19 319 33 HOH HOH . O 4 HOH B 20 320 34 HOH HOH . O 4 HOH B 21 321 35 HOH HOH . O 4 HOH B 22 322 70 HOH HOH . O 4 HOH B 23 323 75 HOH HOH . O 4 HOH B 24 324 79 HOH HOH . O 4 HOH B 25 325 83 HOH HOH . O 4 HOH B 26 326 87 HOH HOH . O 4 HOH B 27 327 90 HOH HOH . O 4 HOH B 28 328 91 HOH HOH . O 4 HOH B 29 329 92 HOH HOH . O 4 HOH B 30 330 96 HOH HOH . O 4 HOH B 31 331 99 HOH HOH . O 4 HOH B 32 332 100 HOH HOH . O 4 HOH B 33 333 114 HOH HOH . O 4 HOH B 34 334 115 HOH HOH . O 4 HOH B 35 335 116 HOH HOH . O 4 HOH B 36 336 117 HOH HOH . O 4 HOH B 37 337 118 HOH HOH . O 4 HOH B 38 338 119 HOH HOH . O 4 HOH B 39 339 120 HOH HOH . O 4 HOH B 40 340 121 HOH HOH . P 4 HOH C 1 301 36 HOH HOH . P 4 HOH C 2 302 37 HOH HOH . P 4 HOH C 3 303 38 HOH HOH . P 4 HOH C 4 304 39 HOH HOH . P 4 HOH C 5 305 40 HOH HOH . P 4 HOH C 6 306 41 HOH HOH . P 4 HOH C 7 307 42 HOH HOH . P 4 HOH C 8 308 43 HOH HOH . P 4 HOH C 9 309 44 HOH HOH . P 4 HOH C 10 310 45 HOH HOH . P 4 HOH C 11 311 46 HOH HOH . P 4 HOH C 12 312 47 HOH HOH . P 4 HOH C 13 313 48 HOH HOH . P 4 HOH C 14 314 49 HOH HOH . P 4 HOH C 15 315 50 HOH HOH . P 4 HOH C 16 316 51 HOH HOH . P 4 HOH C 17 317 52 HOH HOH . P 4 HOH C 18 318 71 HOH HOH . P 4 HOH C 19 319 93 HOH HOH . P 4 HOH C 20 320 103 HOH HOH . P 4 HOH C 21 321 104 HOH HOH . P 4 HOH C 22 322 105 HOH HOH . P 4 HOH C 23 323 106 HOH HOH . P 4 HOH C 24 324 107 HOH HOH . P 4 HOH C 25 325 108 HOH HOH . P 4 HOH C 26 326 109 HOH HOH . P 4 HOH C 27 327 110 HOH HOH . P 4 HOH C 28 328 111 HOH HOH . P 4 HOH C 29 329 112 HOH HOH . P 4 HOH C 30 330 113 HOH HOH . Q 4 HOH D 1 301 53 HOH HOH . Q 4 HOH D 2 302 54 HOH HOH . Q 4 HOH D 3 303 55 HOH HOH . Q 4 HOH D 4 304 56 HOH HOH . Q 4 HOH D 5 305 57 HOH HOH . Q 4 HOH D 6 306 58 HOH HOH . Q 4 HOH D 7 307 59 HOH HOH . Q 4 HOH D 8 308 60 HOH HOH . Q 4 HOH D 9 309 61 HOH HOH . Q 4 HOH D 10 310 62 HOH HOH . Q 4 HOH D 11 311 63 HOH HOH . Q 4 HOH D 12 312 64 HOH HOH . Q 4 HOH D 13 313 65 HOH HOH . Q 4 HOH D 14 314 66 HOH HOH . Q 4 HOH D 15 315 67 HOH HOH . Q 4 HOH D 16 316 68 HOH HOH . Q 4 HOH D 17 317 69 HOH HOH . Q 4 HOH D 18 318 72 HOH HOH . Q 4 HOH D 19 319 73 HOH HOH . Q 4 HOH D 20 320 74 HOH HOH . Q 4 HOH D 21 321 76 HOH HOH . Q 4 HOH D 22 322 77 HOH HOH . Q 4 HOH D 23 323 78 HOH HOH . Q 4 HOH D 24 324 80 HOH HOH . Q 4 HOH D 25 325 81 HOH HOH . Q 4 HOH D 26 326 88 HOH HOH . Q 4 HOH D 27 327 89 HOH HOH . Q 4 HOH D 28 328 97 HOH HOH . Q 4 HOH D 29 329 98 HOH HOH . Q 4 HOH D 30 330 101 HOH HOH . Q 4 HOH D 31 331 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 TR5 . . . I 2 10.585 18.419 41.107 1 17.17 ? O2 TR5 201 C 1 HETATM 2 P PB TR5 . . . I 2 10.895 18.772 42.618 1 19.45 ? PB TR5 201 C 1 HETATM 3 O O3 TR5 . . . I 2 12.349 18.797 42.869 1 20.23 ? O3 TR5 201 C 1 HETATM 4 O O1 TR5 . . . I 2 10.087 19.962 43 1 19.03 ? O1 TR5 201 C 1 HETATM 5 O O5' TR5 . . . I 2 10.288 17.441 43.339 1 20.43 ? O5' TR5 201 C 1 HETATM 6 C C5' TR5 . . . I 2 9.873 17.501 44.707 1 21.36 ? C5' TR5 201 C 1 HETATM 7 C C4' TR5 . . . I 2 9.542 16.111 45.265 1 22.09 ? C4' TR5 201 C 1 HETATM 8 O O4' TR5 . . . I 2 10.456 15.096 44.78 1 23.23 ? O4' TR5 201 C 1 HETATM 9 C C3' TR5 . . . I 2 9.69 16.177 46.785 1 23.82 ? C3' TR5 201 C 1 HETATM 10 O O3' TR5 . . . I 2 8.38 15.987 47.419 1 21.91 ? O3' TR5 201 C 1 HETATM 11 C C2' TR5 . . . I 2 10.727 15.096 47.157 1 24.31 ? C2' TR5 201 C 1 HETATM 12 O O2' TR5 . . . I 2 10.111 14.013 47.869 1 24.18 ? O2' TR5 201 C 1 HETATM 13 C C1' TR5 . . . I 2 11.315 14.599 45.83 1 25.05 ? C1' TR5 201 C 1 HETATM 14 N N9 TR5 . . . I 2 12.704 15.113 45.618 1 28.66 ? N9 TR5 201 C 1 HETATM 15 C C8 TR5 . . . I 2 13.077 15.975 44.656 1 30 ? C8 TR5 201 C 1 HETATM 16 C C7 TR5 . . . I 2 14.384 16.216 44.783 1 32.15 ? C7 TR5 201 C 1 HETATM 17 C C5 TR5 . . . I 2 14.791 15.501 45.826 1 32.64 ? C5 TR5 201 C 1 HETATM 18 C C4 TR5 . . . I 2 13.783 14.816 46.351 1 30.89 ? C4 TR5 201 C 1 HETATM 19 N N3 TR5 . . . I 2 13.992 14.022 47.42 1 32.16 ? N3 TR5 201 C 1 HETATM 20 C C2 TR5 . . . I 2 15.346 13.892 48.036 1 33.74 ? C2 TR5 201 C 1 HETATM 21 N N1 TR5 . . . I 2 16.369 14.727 47.331 1 34.62 ? N1 TR5 201 C 1 HETATM 22 C C6 TR5 . . . I 2 16.053 15.488 46.264 1 34.25 ? C6 TR5 201 C 1 HETATM 23 N N61 TR5 . . . I 2 16.966 16.25 45.604 1 35.76 ? N61 TR5 201 C 1 HETATM 24 C C62 TR5 . . . I 2 18.398 16.293 46.026 1 36.39 ? C62 TR5 201 C 1 HETATM 25 N N71 TR5 . . . I 2 16.574 16.992 44.535 1 34.23 ? N71 TR5 201 C 1 HETATM 26 C C72 TR5 . . . I 2 15.286 16.97 44.134 1 33.25 ? C72 TR5 201 C 1 HETATM 27 N N73 TR5 . . . I 2 14.86 17.676 43.083 1 32.65 ? N73 TR5 201 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #