data_4FZ9 # _model_server_result.job_id MVBjI7x9l-VCQF87TOXyww _model_server_result.datetime_utc '2025-09-04 09:58:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4FZ9 # _exptl.entry_id 4FZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4FZ9 _cell.length_a 130.39 _cell.length_b 130.39 _cell.length_c 39.808 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BMA _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG Z 304 NAG 2 n B BMA 2 B 2 BMA Z 305 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 BMA . B BMA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 140 n n C1 C2 GOL sing 141 n n C1 H11 GOL sing 142 n n C1 H12 GOL sing 143 n n O1 HO1 GOL sing 144 n n C2 O2 GOL sing 145 n n C2 C3 GOL sing 146 n n C2 H2 GOL sing 147 n n O2 HO2 GOL sing 148 n n C3 O3 GOL sing 149 n n C3 H31 GOL sing 150 n n C3 H32 GOL sing 151 n n O3 HO3 GOL sing 152 n n # _atom_sites.entry_id 4FZ9 _atom_sites.fract_transf_matrix[1][1] 0.007669 _atom_sites.fract_transf_matrix[1][2] 0.004428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 247 NAG NAG . D 4 GOL A 1 302 248 GOL GOL . E 4 GOL A 1 303 249 GOL GOL . F 5 HOH A 1 401 251 HOH HOH . F 5 HOH A 2 402 252 HOH HOH . F 5 HOH A 3 403 254 HOH HOH . F 5 HOH A 4 404 255 HOH HOH . F 5 HOH A 5 405 256 HOH HOH . F 5 HOH A 6 406 257 HOH HOH . F 5 HOH A 7 407 258 HOH HOH . F 5 HOH A 8 408 259 HOH HOH . F 5 HOH A 9 409 260 HOH HOH . F 5 HOH A 10 410 261 HOH HOH . F 5 HOH A 11 411 262 HOH HOH . F 5 HOH A 12 412 264 HOH HOH . F 5 HOH A 13 413 266 HOH HOH . F 5 HOH A 14 414 267 HOH HOH . F 5 HOH A 15 415 268 HOH HOH . F 5 HOH A 16 416 269 HOH HOH . F 5 HOH A 17 417 270 HOH HOH . F 5 HOH A 18 418 271 HOH HOH . F 5 HOH A 19 419 274 HOH HOH . F 5 HOH A 20 420 275 HOH HOH . F 5 HOH A 21 421 276 HOH HOH . F 5 HOH A 22 422 277 HOH HOH . F 5 HOH A 23 423 278 HOH HOH . F 5 HOH A 24 424 279 HOH HOH . F 5 HOH A 25 425 280 HOH HOH . F 5 HOH A 26 426 281 HOH HOH . F 5 HOH A 27 427 282 HOH HOH . F 5 HOH A 28 428 283 HOH HOH . F 5 HOH A 29 429 284 HOH HOH . F 5 HOH A 30 430 285 HOH HOH . F 5 HOH A 31 431 286 HOH HOH . F 5 HOH A 32 432 288 HOH HOH . F 5 HOH A 33 433 289 HOH HOH . F 5 HOH A 34 434 290 HOH HOH . F 5 HOH A 35 435 291 HOH HOH . F 5 HOH A 36 436 292 HOH HOH . F 5 HOH A 37 437 293 HOH HOH . F 5 HOH A 38 438 294 HOH HOH . F 5 HOH A 39 439 295 HOH HOH . F 5 HOH A 40 440 296 HOH HOH . F 5 HOH A 41 441 297 HOH HOH . F 5 HOH A 42 442 298 HOH HOH . F 5 HOH A 43 443 299 HOH HOH . F 5 HOH A 44 444 300 HOH HOH . F 5 HOH A 45 445 301 HOH HOH . F 5 HOH A 46 446 302 HOH HOH . F 5 HOH A 47 447 303 HOH HOH . F 5 HOH A 48 448 304 HOH HOH . F 5 HOH A 49 449 305 HOH HOH . F 5 HOH A 50 450 306 HOH HOH . F 5 HOH A 51 451 307 HOH HOH . F 5 HOH A 52 452 308 HOH HOH . F 5 HOH A 53 453 309 HOH HOH . F 5 HOH A 54 454 310 HOH HOH . F 5 HOH A 55 455 311 HOH HOH . F 5 HOH A 56 456 312 HOH HOH . F 5 HOH A 57 457 313 HOH HOH . F 5 HOH A 58 458 314 HOH HOH . F 5 HOH A 59 459 315 HOH HOH . F 5 HOH A 60 460 316 HOH HOH . F 5 HOH A 61 461 317 HOH HOH . F 5 HOH A 62 462 318 HOH HOH . F 5 HOH A 63 463 319 HOH HOH . F 5 HOH A 64 464 320 HOH HOH . F 5 HOH A 65 465 321 HOH HOH . F 5 HOH A 66 466 322 HOH HOH . F 5 HOH A 67 467 323 HOH HOH . F 5 HOH A 68 468 324 HOH HOH . F 5 HOH A 69 469 325 HOH HOH . F 5 HOH A 70 470 326 HOH HOH . F 5 HOH A 71 471 327 HOH HOH . F 5 HOH A 72 472 328 HOH HOH . F 5 HOH A 73 473 329 HOH HOH . F 5 HOH A 74 474 330 HOH HOH . F 5 HOH A 75 475 331 HOH HOH . F 5 HOH A 76 476 332 HOH HOH . F 5 HOH A 77 477 333 HOH HOH . F 5 HOH A 78 478 334 HOH HOH . F 5 HOH A 79 479 335 HOH HOH . F 5 HOH A 80 480 336 HOH HOH . F 5 HOH A 81 481 337 HOH HOH . F 5 HOH A 82 482 338 HOH HOH . F 5 HOH A 83 483 339 HOH HOH . F 5 HOH A 84 484 340 HOH HOH . F 5 HOH A 85 485 341 HOH HOH . F 5 HOH A 86 486 342 HOH HOH . F 5 HOH A 87 487 343 HOH HOH . F 5 HOH A 88 488 344 HOH HOH . F 5 HOH A 89 489 345 HOH HOH . F 5 HOH A 90 490 346 HOH HOH . F 5 HOH A 91 491 347 HOH HOH . F 5 HOH A 92 492 348 HOH HOH . F 5 HOH A 93 493 349 HOH HOH . F 5 HOH A 94 494 350 HOH HOH . F 5 HOH A 95 495 351 HOH HOH . F 5 HOH A 96 496 352 HOH HOH . F 5 HOH A 97 497 353 HOH HOH . F 5 HOH A 98 498 354 HOH HOH . F 5 HOH A 99 499 355 HOH HOH . F 5 HOH A 100 500 356 HOH HOH . F 5 HOH A 101 501 357 HOH HOH . F 5 HOH A 102 502 358 HOH HOH . F 5 HOH A 103 503 359 HOH HOH . F 5 HOH A 104 504 360 HOH HOH . F 5 HOH A 105 505 361 HOH HOH . F 5 HOH A 106 506 362 HOH HOH . F 5 HOH A 107 507 363 HOH HOH . F 5 HOH A 108 508 364 HOH HOH . F 5 HOH A 109 509 365 HOH HOH . F 5 HOH A 110 510 366 HOH HOH . F 5 HOH A 111 511 367 HOH HOH . F 5 HOH A 112 512 368 HOH HOH . F 5 HOH A 113 513 369 HOH HOH . F 5 HOH A 114 514 370 HOH HOH . F 5 HOH A 115 515 371 HOH HOH . F 5 HOH A 116 516 372 HOH HOH . F 5 HOH A 117 517 373 HOH HOH . F 5 HOH A 118 518 374 HOH HOH . F 5 HOH A 119 519 375 HOH HOH . F 5 HOH A 120 520 376 HOH HOH . F 5 HOH A 121 521 377 HOH HOH . F 5 HOH A 122 522 378 HOH HOH . F 5 HOH A 123 523 379 HOH HOH . F 5 HOH A 124 524 380 HOH HOH . F 5 HOH A 125 525 381 HOH HOH . F 5 HOH A 126 526 382 HOH HOH . F 5 HOH A 127 527 383 HOH HOH . F 5 HOH A 128 528 384 HOH HOH . F 5 HOH A 129 529 385 HOH HOH . F 5 HOH A 130 530 386 HOH HOH . F 5 HOH A 131 531 387 HOH HOH . F 5 HOH A 132 532 388 HOH HOH . F 5 HOH A 133 533 389 HOH HOH . F 5 HOH A 134 534 390 HOH HOH . F 5 HOH A 135 535 391 HOH HOH . F 5 HOH A 136 536 392 HOH HOH . F 5 HOH A 137 537 393 HOH HOH . F 5 HOH A 138 538 394 HOH HOH . F 5 HOH A 139 539 395 HOH HOH . F 5 HOH A 140 540 396 HOH HOH . F 5 HOH A 141 541 397 HOH HOH . F 5 HOH A 142 542 398 HOH HOH . F 5 HOH A 143 543 399 HOH HOH . F 5 HOH A 144 544 400 HOH HOH . F 5 HOH A 145 545 401 HOH HOH . F 5 HOH A 146 546 402 HOH HOH . F 5 HOH A 147 547 403 HOH HOH . F 5 HOH A 148 548 404 HOH HOH . F 5 HOH A 149 549 405 HOH HOH . F 5 HOH A 150 550 406 HOH HOH . F 5 HOH A 151 551 407 HOH HOH . F 5 HOH A 152 552 408 HOH HOH . F 5 HOH A 153 553 409 HOH HOH . F 5 HOH A 154 554 410 HOH HOH . F 5 HOH A 155 555 411 HOH HOH . F 5 HOH A 156 556 412 HOH HOH . F 5 HOH A 157 557 413 HOH HOH . F 5 HOH A 158 558 414 HOH HOH . F 5 HOH A 159 559 415 HOH HOH . F 5 HOH A 160 560 416 HOH HOH . F 5 HOH A 161 561 417 HOH HOH . F 5 HOH A 162 562 418 HOH HOH . F 5 HOH A 163 563 419 HOH HOH . F 5 HOH A 164 564 420 HOH HOH . F 5 HOH A 165 565 421 HOH HOH . F 5 HOH A 166 566 422 HOH HOH . F 5 HOH A 167 567 423 HOH HOH . F 5 HOH A 168 568 424 HOH HOH . F 5 HOH A 169 569 425 HOH HOH . F 5 HOH A 170 570 426 HOH HOH . F 5 HOH A 171 571 427 HOH HOH . F 5 HOH A 172 572 428 HOH HOH . F 5 HOH A 173 573 429 HOH HOH . F 5 HOH A 174 574 430 HOH HOH . F 5 HOH A 175 575 431 HOH HOH . F 5 HOH A 176 576 432 HOH HOH . F 5 HOH A 177 577 433 HOH HOH . F 5 HOH A 178 578 434 HOH HOH . F 5 HOH A 179 579 435 HOH HOH . F 5 HOH A 180 580 436 HOH HOH . F 5 HOH A 181 581 437 HOH HOH . F 5 HOH A 182 582 438 HOH HOH . F 5 HOH A 183 583 439 HOH HOH . F 5 HOH A 184 584 440 HOH HOH . F 5 HOH A 185 585 441 HOH HOH . F 5 HOH A 186 586 442 HOH HOH . F 5 HOH A 187 587 443 HOH HOH . F 5 HOH A 188 588 444 HOH HOH . F 5 HOH A 189 589 445 HOH HOH . F 5 HOH A 190 590 446 HOH HOH . F 5 HOH A 191 591 447 HOH HOH . F 5 HOH A 192 592 448 HOH HOH . F 5 HOH A 193 593 449 HOH HOH . F 5 HOH A 194 594 450 HOH HOH . F 5 HOH A 195 595 451 HOH HOH . F 5 HOH A 196 596 452 HOH HOH . F 5 HOH A 197 597 454 HOH HOH . F 5 HOH A 198 598 455 HOH HOH . F 5 HOH A 199 599 456 HOH HOH . F 5 HOH A 200 600 457 HOH HOH . F 5 HOH A 201 601 458 HOH HOH . F 5 HOH A 202 602 459 HOH HOH . F 5 HOH A 203 603 460 HOH HOH . F 5 HOH A 204 604 461 HOH HOH . F 5 HOH A 205 605 462 HOH HOH . F 5 HOH A 206 606 463 HOH HOH . F 5 HOH A 207 607 464 HOH HOH . F 5 HOH A 208 608 465 HOH HOH . F 5 HOH A 209 609 466 HOH HOH . F 5 HOH A 210 610 467 HOH HOH . F 5 HOH A 211 611 468 HOH HOH . F 5 HOH A 212 612 469 HOH HOH . F 5 HOH A 213 613 470 HOH HOH . F 5 HOH A 214 614 471 HOH HOH . F 5 HOH A 215 615 472 HOH HOH . F 5 HOH A 216 616 473 HOH HOH . F 5 HOH A 217 617 474 HOH HOH . F 5 HOH A 218 618 475 HOH HOH . F 5 HOH A 219 619 476 HOH HOH . F 5 HOH A 220 620 477 HOH HOH . F 5 HOH A 221 621 478 HOH HOH . F 5 HOH A 222 622 480 HOH HOH . F 5 HOH A 223 623 481 HOH HOH . F 5 HOH A 224 624 482 HOH HOH . F 5 HOH A 225 625 483 HOH HOH . F 5 HOH A 226 626 484 HOH HOH . F 5 HOH A 227 627 485 HOH HOH . F 5 HOH A 228 628 486 HOH HOH . F 5 HOH A 229 629 487 HOH HOH . F 5 HOH A 230 630 488 HOH HOH . F 5 HOH A 231 631 489 HOH HOH . F 5 HOH A 232 632 490 HOH HOH . F 5 HOH A 233 633 491 HOH HOH . F 5 HOH A 234 634 492 HOH HOH . F 5 HOH A 235 635 493 HOH HOH . F 5 HOH A 236 636 494 HOH HOH . F 5 HOH A 237 637 495 HOH HOH . F 5 HOH A 238 638 496 HOH HOH . F 5 HOH A 239 639 497 HOH HOH . F 5 HOH A 240 640 498 HOH HOH . F 5 HOH A 241 641 499 HOH HOH . F 5 HOH A 242 642 501 HOH HOH . F 5 HOH A 243 643 502 HOH HOH . F 5 HOH A 244 644 503 HOH HOH . F 5 HOH A 245 645 504 HOH HOH . F 5 HOH A 246 646 505 HOH HOH . F 5 HOH A 247 647 506 HOH HOH . F 5 HOH A 248 648 508 HOH HOH . F 5 HOH A 249 649 509 HOH HOH . F 5 HOH A 250 650 510 HOH HOH . F 5 HOH A 251 651 511 HOH HOH . F 5 HOH A 252 652 512 HOH HOH . F 5 HOH A 253 653 514 HOH HOH . F 5 HOH A 254 654 516 HOH HOH . F 5 HOH A 255 655 517 HOH HOH . F 5 HOH A 256 656 518 HOH HOH . F 5 HOH A 257 657 519 HOH HOH . F 5 HOH A 258 658 521 HOH HOH . F 5 HOH A 259 659 523 HOH HOH . F 5 HOH A 260 660 524 HOH HOH . F 5 HOH A 261 661 525 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -18.165 3.843 -8.66 1 33.77 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 4 -16.845 4.367 -8.826 1 32.25 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 4 -18.651 3.401 -10.055 1 34.38 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 4 -17.474 3.16 -10.91 1 35.64 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 4 -19.662 4.515 -10.44 1 32.63 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 4 -20.163 4.479 -11.775 1 35.5 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #