data_4FZB # _model_server_result.job_id YfI16Y8jRIXu8mg2NYcHfA _model_server_result.datetime_utc '2025-02-27 17:14:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":302}' # _entry.id 4FZB # _exptl.entry_id 4FZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 111.65 _cell.angle_beta 91.13 _cell.angle_gamma 90.18 _cell.entry_id 4FZB _cell.length_a 69.975 _cell.length_b 120.585 _cell.length_c 128.249 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,JB,KB,LB,MB 1 1 E,F,G,H,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,NB,OB,PB,QB 2 1 I,J,K,L,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,RB,SB,TB,UB 3 1 M,N,O,P,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,VB,WB,XB,YB 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 T N N ? 4 W N N ? 4 Z N N ? 4 BA N N ? 4 EA N N ? 4 HA N N ? 4 KA N N ? 4 NA N N ? 4 QA N N ? 4 WA N N ? 4 ZA N N ? 4 FB N N ? 4 IB N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 121 n n S C1 DMS sing 122 n n S C2 DMS sing 123 n n C1 H11 DMS sing 124 n n C1 H12 DMS sing 125 n n C1 H13 DMS sing 126 n n C2 H21 DMS sing 127 n n C2 H22 DMS sing 128 n n C2 H23 DMS sing 129 n n # _atom_sites.entry_id 4FZB _atom_sites.fract_transf_matrix[1][1] 0.014291 _atom_sites.fract_transf_matrix[1][2] 0.000045 _atom_sites.fract_transf_matrix[1][3] 0.000321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008293 _atom_sites.fract_transf_matrix[2][3] 0.003293 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 FAD A 1 301 1219 FAD FAD . R 2 FAD A 1 302 301 FAD FAD . S 3 0VJ A 1 303 2000 0VJ IC8 . T 4 DMS A 1 304 3092 DMS DMS . U 3 0VJ A 1 305 2000 0VJ IC8 . V 2 FAD B 1 301 1219 FAD FAD . W 4 DMS B 1 302 3092 DMS DMS . X 3 0VJ B 1 303 2000 0VJ IC8 . Y 2 FAD C 1 301 1219 FAD FAD . Z 4 DMS C 1 302 3092 DMS DMS . AA 3 0VJ D 1 301 2000 0VJ IC8 . BA 4 DMS D 1 302 3092 DMS DMS . CA 2 FAD E 1 301 301 FAD FAD . DA 3 0VJ E 1 302 2000 0VJ IC8 . EA 4 DMS E 1 303 3092 DMS DMS . FA 2 FAD F 1 301 1219 FAD FAD . GA 2 FAD F 1 302 301 FAD FAD . HA 4 DMS F 1 303 3092 DMS DMS . IA 3 0VJ F 1 304 2000 0VJ IC8 . JA 3 0VJ G 1 301 2000 0VJ IC8 . KA 4 DMS G 1 302 3092 DMS DMS . LA 3 0VJ H 1 301 2000 0VJ IC8 . MA 2 FAD H 1 302 1219 FAD FAD . NA 4 DMS H 1 303 3092 DMS DMS . OA 2 FAD I 1 301 301 FAD FAD . PA 2 FAD I 1 302 301 FAD FAD . QA 4 DMS I 1 303 3092 DMS DMS . RA 3 0VJ I 1 304 2000 0VJ IC8 . SA 2 FAD J 1 301 1219 FAD FAD . TA 3 0VJ J 1 302 2000 0VJ IC8 . UA 3 0VJ K 1 301 2000 0VJ IC8 . VA 2 FAD K 1 302 1219 FAD FAD . WA 4 DMS K 1 303 3092 DMS DMS . XA 3 0VJ L 1 301 2000 0VJ IC8 . YA 2 FAD M 1 301 301 FAD FAD . ZA 4 DMS M 1 302 3092 DMS DMS . AB 3 0VJ M 1 303 2000 0VJ IC8 . BB 2 FAD N 1 301 1219 FAD FAD . CB 3 0VJ N 1 302 2000 0VJ IC8 . DB 3 0VJ O 1 301 2000 0VJ IC8 . EB 2 FAD O 1 302 1219 FAD FAD . FB 4 DMS O 1 303 3092 DMS DMS . GB 2 FAD P 1 301 301 FAD FAD . HB 3 0VJ P 1 302 2000 0VJ IC8 . IB 4 DMS P 1 303 3092 DMS DMS . JB 5 HOH A 1 401 2 HOH HOH . JB 5 HOH A 2 402 9 HOH HOH . JB 5 HOH A 3 403 10 HOH HOH . JB 5 HOH A 4 404 11 HOH HOH . JB 5 HOH A 5 405 12 HOH HOH . JB 5 HOH A 6 406 13 HOH HOH . JB 5 HOH A 7 407 14 HOH HOH . JB 5 HOH A 8 408 15 HOH HOH . JB 5 HOH A 9 409 16 HOH HOH . JB 5 HOH A 10 410 17 HOH HOH . JB 5 HOH A 11 411 20 HOH HOH . KB 5 HOH B 1 401 3 HOH HOH . KB 5 HOH B 2 402 4 HOH HOH . KB 5 HOH B 3 403 5 HOH HOH . KB 5 HOH B 4 404 6 HOH HOH . KB 5 HOH B 5 405 7 HOH HOH . KB 5 HOH B 6 406 18 HOH HOH . KB 5 HOH B 7 407 92 HOH HOH . LB 5 HOH C 1 401 8 HOH HOH . LB 5 HOH C 2 402 22 HOH HOH . MB 5 HOH D 1 401 1 HOH HOH . MB 5 HOH D 2 402 21 HOH HOH . MB 5 HOH D 3 403 23 HOH HOH . MB 5 HOH D 4 404 24 HOH HOH . MB 5 HOH D 5 405 25 HOH HOH . MB 5 HOH D 6 406 26 HOH HOH . MB 5 HOH D 7 407 27 HOH HOH . NB 5 HOH E 1 401 28 HOH HOH . NB 5 HOH E 2 402 29 HOH HOH . NB 5 HOH E 3 403 30 HOH HOH . NB 5 HOH E 4 404 31 HOH HOH . NB 5 HOH E 5 405 32 HOH HOH . NB 5 HOH E 6 406 39 HOH HOH . NB 5 HOH E 7 407 57 HOH HOH . NB 5 HOH E 8 408 65 HOH HOH . OB 5 HOH F 1 401 33 HOH HOH . OB 5 HOH F 2 402 34 HOH HOH . OB 5 HOH F 3 403 35 HOH HOH . OB 5 HOH F 4 404 36 HOH HOH . OB 5 HOH F 5 405 37 HOH HOH . OB 5 HOH F 6 406 38 HOH HOH . OB 5 HOH F 7 407 40 HOH HOH . OB 5 HOH F 8 408 41 HOH HOH . OB 5 HOH F 9 409 42 HOH HOH . OB 5 HOH F 10 410 43 HOH HOH . OB 5 HOH F 11 411 44 HOH HOH . OB 5 HOH F 12 412 91 HOH HOH . OB 5 HOH F 13 413 59 HOH HOH . PB 5 HOH G 1 401 45 HOH HOH . PB 5 HOH G 2 402 46 HOH HOH . PB 5 HOH G 3 403 47 HOH HOH . PB 5 HOH G 4 404 48 HOH HOH . PB 5 HOH G 5 405 50 HOH HOH . PB 5 HOH G 6 406 51 HOH HOH . PB 5 HOH G 7 407 52 HOH HOH . PB 5 HOH G 8 408 53 HOH HOH . PB 5 HOH G 9 409 54 HOH HOH . PB 5 HOH G 10 410 55 HOH HOH . PB 5 HOH G 11 411 56 HOH HOH . PB 5 HOH G 12 412 58 HOH HOH . PB 5 HOH G 13 413 60 HOH HOH . QB 5 HOH H 1 401 49 HOH HOH . QB 5 HOH H 2 402 61 HOH HOH . QB 5 HOH H 3 403 62 HOH HOH . QB 5 HOH H 4 404 63 HOH HOH . QB 5 HOH H 5 405 64 HOH HOH . RB 5 HOH I 1 401 66 HOH HOH . RB 5 HOH I 2 402 68 HOH HOH . RB 5 HOH I 3 403 69 HOH HOH . SB 5 HOH J 1 401 19 HOH HOH . SB 5 HOH J 2 402 70 HOH HOH . SB 5 HOH J 3 403 71 HOH HOH . SB 5 HOH J 4 404 73 HOH HOH . SB 5 HOH J 5 405 72 HOH HOH . TB 5 HOH K 1 401 74 HOH HOH . TB 5 HOH K 2 402 75 HOH HOH . UB 5 HOH L 1 401 67 HOH HOH . UB 5 HOH L 2 402 76 HOH HOH . UB 5 HOH L 3 403 77 HOH HOH . UB 5 HOH L 4 404 78 HOH HOH . UB 5 HOH L 5 405 79 HOH HOH . UB 5 HOH L 6 406 80 HOH HOH . VB 5 HOH M 1 401 84 HOH HOH . VB 5 HOH M 2 402 85 HOH HOH . VB 5 HOH M 3 403 87 HOH HOH . WB 5 HOH N 1 401 81 HOH HOH . WB 5 HOH N 2 402 82 HOH HOH . WB 5 HOH N 3 403 83 HOH HOH . WB 5 HOH N 4 404 88 HOH HOH . WB 5 HOH N 5 405 89 HOH HOH . XB 5 HOH O 1 401 86 HOH HOH . YB 5 HOH P 1 401 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . BA 4 15.959 -4.093 -15.259 1 74.09 ? S DMS 302 D 1 HETATM 2 O O DMS . . . BA 4 14.675 -3.862 -15.809 1 67.64 ? O DMS 302 D 1 HETATM 3 C C1 DMS . . . BA 4 16.57 -2.482 -14.723 1 63.84 ? C1 DMS 302 D 1 HETATM 4 C C2 DMS . . . BA 4 15.939 -5.105 -13.743 1 63.06 ? C2 DMS 302 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 31 _model_server_stats.element_count 4 #