data_4FZZ # _model_server_result.job_id wtSx_RjjUFkFMwChXyTyTQ _model_server_result.datetime_utc '2024-11-21 23:41:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4fzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 4FZZ # _exptl.entry_id 4FZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4FZZ _cell.length_a 37.192 _cell.length_b 79.009 _cell.length_c 156.012 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4FZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O3' DA 16 D DA 11 1_555 E NA NA . D NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc2 A OP1 DG 17 D DG 12 1_555 E NA NA . D NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc3 A OP1 DG 17 D DG 12 1_555 H NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 E NA NA . D NA 101 1_555 D OD2 ASP 6 B ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc5 E NA NA . D NA 101 1_555 L O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 E NA NA . D NA 101 1_555 L O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc7 E NA NA . D NA 101 1_555 L O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc8 B O3' DA 16 C DA 11 1_555 F NA NA . C NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc9 B OP1 DG 17 C DG 12 1_555 F NA NA . C NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc10 B OP1 DG 17 C DG 12 1_555 G NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc11 F NA NA . C NA 101 1_555 C OD1 ASP 6 A ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 F NA NA . C NA 101 1_555 K O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc13 F NA NA . C NA 101 1_555 K O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc14 F NA NA . C NA 101 1_555 K O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc15 C OD2 ASP 6 A ASP 6 1_555 G NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc16 C OE2 GLU 8 A GLU 8 1_555 G NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc17 C OD2 ASP 139 A ASP 139 1_555 G NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc18 D OD1 ASP 6 B ASP 6 1_555 H NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc19 D OE2 GLU 8 B GLU 8 1_555 H NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc20 D OD2 ASP 139 B ASP 139 1_555 H NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? hydrog TYPE_8_PAIR hydrog1 A N1 DG 7 D DG 2 1_555 B N1 DA 16 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog2 A O6 DG 7 D DG 2 1_555 B N6 DA 16 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DG MISPAIR' hydrog3 A O4 DT 8 D DT 3 1_555 B N1 DG 15 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 9 D DG 4 1_555 B N3 DC 14 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 9 D DG 4 1_555 B O2 DC 14 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 9 D DG 4 1_555 B N4 DC 14 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 10 D DG 5 1_555 B N3 DC 13 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 10 D DG 5 1_555 B O2 DC 13 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 10 D DG 5 1_555 B N4 DC 13 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 11 D DA 6 1_555 B N3 DT 12 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 11 D DA 6 1_555 B O4 DT 12 C DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 12 D DT 7 1_555 B N1 DA 11 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 12 D DT 7 1_555 B N6 DA 11 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 13 D DC 8 1_555 B N1 DG 10 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 13 D DC 8 1_555 B O6 DG 10 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 13 D DC 8 1_555 B N2 DG 10 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DC 14 D DC 9 1_555 B N1 DG 9 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DC 14 D DC 9 1_555 B O6 DG 9 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DC 14 D DC 9 1_555 B N2 DG 9 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog20 A N1 DG 15 D DG 10 1_555 B O2 DT 8 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog21 A O6 DG 15 D DG 10 1_555 B N3 DT 8 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DG MISPAIR' hydrog22 A N1 DA 16 D DA 11 1_555 B N1 DG 7 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4FZZ _atom_sites.fract_transf_matrix[1][1] 0.026888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA D 1 101 2 NA NA . F 3 NA C 1 101 4 NA NA . G 3 NA A 1 201 3 NA NA . H 3 NA B 1 201 1 NA NA . I 4 HOH D 1 201 21 HOH HOH . I 4 HOH D 2 202 27 HOH HOH . J 4 HOH C 1 201 6 HOH HOH . J 4 HOH C 2 202 15 HOH HOH . K 4 HOH A 1 301 1 HOH HOH . K 4 HOH A 2 302 5 HOH HOH . K 4 HOH A 3 303 7 HOH HOH . K 4 HOH A 4 304 19 HOH HOH . K 4 HOH A 5 305 20 HOH HOH . K 4 HOH A 6 306 29 HOH HOH . K 4 HOH A 7 307 30 HOH HOH . L 4 HOH B 1 301 2 HOH HOH . L 4 HOH B 2 302 3 HOH HOH . L 4 HOH B 3 303 4 HOH HOH . L 4 HOH B 4 304 8 HOH HOH . L 4 HOH B 5 305 9 HOH HOH . L 4 HOH B 6 306 10 HOH HOH . L 4 HOH B 7 307 11 HOH HOH . L 4 HOH B 8 308 12 HOH HOH . L 4 HOH B 9 309 13 HOH HOH . L 4 HOH B 10 310 14 HOH HOH . L 4 HOH B 11 311 16 HOH HOH . L 4 HOH B 12 312 17 HOH HOH . L 4 HOH B 13 313 18 HOH HOH . L 4 HOH B 14 314 22 HOH HOH . L 4 HOH B 15 315 23 HOH HOH . L 4 HOH B 16 316 24 HOH HOH . L 4 HOH B 17 317 25 HOH HOH . L 4 HOH B 18 318 26 HOH HOH . L 4 HOH B 19 319 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.461 _atom_site.Cartn_y 8.467 _atom_site.Cartn_z -54.13 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #