data_4G0N # _model_server_result.job_id 8KCVX-BliZxkMkIVpMPcGA _model_server_result.datetime_utc '2024-11-27 03:16:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4G0N # _exptl.entry_id 4G0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G0N _cell.length_a 90.44 _cell.length_b 90.44 _cell.length_c 92.703 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 A O ASP 107 A ASP 107 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A O TYR 137 A TYR 137 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 C O2G GNP . A GNP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc6 C O2B GNP . A GNP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 D CA CA . A CA 202 1_555 G O ACT . A ACT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc8 D CA CA . A CA 202 1_555 G OXT ACT . A ACT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc9 D CA CA . A CA 202 1_555 I O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc10 D CA CA . A CA 202 1_555 I O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc11 D CA CA . A CA 202 1_555 I O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc12 E MG MG . A MG 203 1_555 I O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc13 E MG MG . A MG 203 1_555 I O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 F CA CA . A CA 204 1_555 I O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc15 F CA CA . A CA 204 1_555 I O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 152 n n PG O2G GNP sing 153 n n PG O3G GNP sing 154 n n PG N3B GNP sing 155 n n O2G HOG2 GNP sing 156 n n O3G HOG3 GNP sing 157 n n N3B PB GNP sing 158 n n N3B HNB3 GNP sing 159 n n PB O1B GNP doub 160 n n PB O2B GNP sing 161 n n PB O3A GNP sing 162 n n O2B HOB2 GNP sing 163 n n O3A PA GNP sing 164 n n PA O1A GNP doub 165 n n PA O2A GNP sing 166 n n PA O5' GNP sing 167 n n O2A HOA2 GNP sing 168 n n O5' C5' GNP sing 169 n n C5' C4' GNP sing 170 n n C5' "H5'2" GNP sing 171 n n C5' "H5'1" GNP sing 172 n n C4' O4' GNP sing 173 n n C4' C3' GNP sing 174 n n C4' H4' GNP sing 175 n n O4' C1' GNP sing 176 n n C3' O3' GNP sing 177 n n C3' C2' GNP sing 178 n n C3' H3' GNP sing 179 n n O3' HO3' GNP sing 180 n n C2' O2' GNP sing 181 n n C2' C1' GNP sing 182 n n C2' H2' GNP sing 183 n n O2' HO2' GNP sing 184 n n C1' N9 GNP sing 185 n n C1' H1' GNP sing 186 n n N9 C8 GNP sing 187 n y N9 C4 GNP sing 188 n y C8 N7 GNP doub 189 n y C8 H8 GNP sing 190 n n N7 C5 GNP sing 191 n y C5 C6 GNP sing 192 n y C5 C4 GNP doub 193 n y C6 O6 GNP doub 194 n n C6 N1 GNP sing 195 n y N1 C2 GNP sing 196 n y N1 HN1 GNP sing 197 n n C2 N2 GNP sing 198 n n C2 N3 GNP doub 199 n y N2 HN21 GNP sing 200 n n N2 HN22 GNP sing 201 n n N3 C4 GNP sing 202 n y # _atom_sites.entry_id 4G0N _atom_sites.fract_transf_matrix[1][1] 0.011057 _atom_sites.fract_transf_matrix[1][2] 0.006384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GNP A 1 201 528 GNP GNP . D 4 CA A 1 202 1 CA CA . E 5 MG A 1 203 1 MG MG . F 4 CA A 1 204 1 CA CA . G 6 ACT A 1 205 719 ACT ACT . H 7 DTU A 1 206 205 DTU DTU . I 8 HOH A 1 301 600 HOH HOH . I 8 HOH A 2 302 601 HOH HOH . I 8 HOH A 3 303 602 HOH HOH . I 8 HOH A 4 304 603 HOH HOH . I 8 HOH A 5 305 604 HOH HOH . I 8 HOH A 6 306 606 HOH HOH . I 8 HOH A 7 307 607 HOH HOH . I 8 HOH A 8 308 608 HOH HOH . I 8 HOH A 9 309 609 HOH HOH . I 8 HOH A 10 310 610 HOH HOH . I 8 HOH A 11 311 611 HOH HOH . I 8 HOH A 12 312 612 HOH HOH . I 8 HOH A 13 313 613 HOH HOH . I 8 HOH A 14 314 614 HOH HOH . I 8 HOH A 15 315 615 HOH HOH . I 8 HOH A 16 316 616 HOH HOH . I 8 HOH A 17 317 617 HOH HOH . I 8 HOH A 18 318 618 HOH HOH . I 8 HOH A 19 319 619 HOH HOH . I 8 HOH A 20 320 620 HOH HOH . I 8 HOH A 21 321 621 HOH HOH . I 8 HOH A 22 322 622 HOH HOH . I 8 HOH A 23 323 623 HOH HOH . I 8 HOH A 24 324 624 HOH HOH . I 8 HOH A 25 325 625 HOH HOH . I 8 HOH A 26 326 626 HOH HOH . I 8 HOH A 27 327 627 HOH HOH . I 8 HOH A 28 328 628 HOH HOH . I 8 HOH A 29 329 629 HOH HOH . I 8 HOH A 30 330 630 HOH HOH . I 8 HOH A 31 331 631 HOH HOH . I 8 HOH A 32 332 634 HOH HOH . I 8 HOH A 33 333 635 HOH HOH . I 8 HOH A 34 334 637 HOH HOH . I 8 HOH A 35 335 638 HOH HOH . I 8 HOH A 36 336 639 HOH HOH . I 8 HOH A 37 337 640 HOH HOH . I 8 HOH A 38 338 643 HOH HOH . I 8 HOH A 39 339 644 HOH HOH . I 8 HOH A 40 340 645 HOH HOH . I 8 HOH A 41 341 646 HOH HOH . I 8 HOH A 42 342 647 HOH HOH . I 8 HOH A 43 343 648 HOH HOH . I 8 HOH A 44 344 652 HOH HOH . I 8 HOH A 45 345 653 HOH HOH . I 8 HOH A 46 346 654 HOH HOH . I 8 HOH A 47 347 655 HOH HOH . I 8 HOH A 48 348 656 HOH HOH . I 8 HOH A 49 349 657 HOH HOH . I 8 HOH A 50 350 658 HOH HOH . I 8 HOH A 51 351 659 HOH HOH . I 8 HOH A 52 352 660 HOH HOH . I 8 HOH A 53 353 661 HOH HOH . I 8 HOH A 54 354 662 HOH HOH . I 8 HOH A 55 355 663 HOH HOH . I 8 HOH A 56 356 665 HOH HOH . I 8 HOH A 57 357 666 HOH HOH . I 8 HOH A 58 358 667 HOH HOH . I 8 HOH A 59 359 668 HOH HOH . I 8 HOH A 60 360 670 HOH HOH . I 8 HOH A 61 361 671 HOH HOH . I 8 HOH A 62 362 673 HOH HOH . I 8 HOH A 63 363 674 HOH HOH . I 8 HOH A 64 364 675 HOH HOH . I 8 HOH A 65 365 676 HOH HOH . I 8 HOH A 66 366 677 HOH HOH . I 8 HOH A 67 367 678 HOH HOH . I 8 HOH A 68 368 679 HOH HOH . I 8 HOH A 69 369 680 HOH HOH . I 8 HOH A 70 370 681 HOH HOH . J 8 HOH B 1 201 605 HOH HOH . J 8 HOH B 2 202 632 HOH HOH . J 8 HOH B 3 203 633 HOH HOH . J 8 HOH B 4 204 636 HOH HOH . J 8 HOH B 5 205 641 HOH HOH . J 8 HOH B 6 206 642 HOH HOH . J 8 HOH B 7 207 649 HOH HOH . J 8 HOH B 8 208 650 HOH HOH . J 8 HOH B 9 209 651 HOH HOH . J 8 HOH B 10 210 664 HOH HOH . J 8 HOH B 11 211 669 HOH HOH . J 8 HOH B 12 212 672 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 38.517 -11.682 -21.87 1 39.22 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . C 3 38.475 -12.758 -22.924 1 46.34 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . C 3 38 -10.332 -22.298 1 42.07 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . C 3 39.939 -11.706 -21.374 1 31.95 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . C 3 37.585 -12.138 -20.672 1 47.62 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . C 3 37.376 -11.299 -19.346 1 36.91 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . C 3 38.562 -11.428 -18.477 1 36.54 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . C 3 36.957 -9.938 -19.734 1 37.4 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . C 3 36.208 -11.919 -18.591 1 36.31 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . C 3 34.777 -11.421 -18.734 1 41.58 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . C 3 34.638 -10.157 -17.979 1 32.69 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . C 3 34.385 -11.413 -20.157 1 42.8 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . C 3 33.837 -12.468 -18.025 1 30.19 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . C 3 33.971 -13.855 -18.307 1 33.47 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . C 3 32.792 -14.665 -17.787 1 27.62 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . C 3 32.851 -14.774 -16.34 1 30.42 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . C 3 31.421 -14.089 -18.12 1 36.24 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . C 3 30.504 -15.133 -18.438 1 39.79 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . C 3 31.036 -13.374 -16.832 1 33.04 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . C 3 29.637 -13.3 -16.668 1 43.28 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . C 3 31.665 -14.264 -15.763 1 36.29 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . C 3 31.996 -13.529 -14.539 1 31.3 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . C 3 32.763 -12.393 -14.443 1 31.25 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . C 3 32.888 -11.945 -13.23 1 38.22 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . C 3 32.163 -12.835 -12.457 1 33.93 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . C 3 31.948 -12.845 -11.057 1 34.66 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . C 3 32.371 -12.047 -10.207 1 36.92 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . C 3 31.154 -13.919 -10.671 1 31.11 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . C 3 30.639 -14.857 -11.534 1 38.55 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . C 3 29.896 -15.814 -10.963 1 32.11 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . C 3 30.832 -14.859 -12.852 1 32.98 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . C 3 31.604 -13.818 -13.246 1 34.47 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 717 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #