data_4G1D # _model_server_result.job_id Kci9HlpGMuLUjfPxDHhYOg _model_server_result.datetime_utc '2024-12-27 00:08:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4G1D # _exptl.entry_id 4G1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 462.62 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-(5'-{[3,4-bis(hydroxymethyl)benzyl]oxy}-2'-methyl-2-propylbiphenyl-4-yl)pentan-3-ol" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G1D _cell.length_a 66.287 _cell.length_b 66.287 _cell.length_c 263.662 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.1435 57.406226 43.943667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H38 O4' _chem_comp.formula_weight 462.62 _chem_comp.id 0VK _chem_comp.mon_nstd_flag . _chem_comp.name "3-(5'-{[3,4-bis(hydroxymethyl)benzyl]oxy}-2'-methyl-2-propylbiphenyl-4-yl)pentan-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C26 0VK sing 1 n n C29 C25 0VK sing 2 n n C26 C24 0VK sing 3 n n C25 C24 0VK sing 4 n n C24 O2 0VK sing 5 n n C24 C16 0VK sing 6 n n C13 C16 0VK doub 7 n y C13 C9 0VK sing 8 n y C16 C12 0VK sing 9 n y C9 C7 0VK doub 10 n y C12 C11 0VK doub 11 n y C7 C11 0VK sing 12 n y C7 C18 0VK sing 13 n n C11 C15 0VK sing 14 n n C17 C18 0VK doub 15 n y C17 C14 0VK sing 16 n y C18 C19 0VK sing 17 n y C6 C1 0VK doub 18 n y C6 C5 0VK sing 19 n y O1 C14 0VK sing 20 n n O1 C10 0VK sing 21 n n C1 C2 0VK sing 22 n y C14 C21 0VK doub 23 n y C15 C22 0VK sing 24 n n C5 C4 0VK doub 25 n y C5 C10 0VK sing 26 n n O53 C52 0VK sing 27 n n C19 C8 0VK sing 28 n n C19 C20 0VK doub 29 n y C2 C52 0VK sing 30 n n C2 C3 0VK doub 31 n y C4 C3 0VK sing 32 n y C3 C48 0VK sing 33 n n C21 C20 0VK sing 34 n y C22 C23 0VK sing 35 n n C48 O49 0VK sing 36 n n C1 H1 0VK sing 37 n n C4 H2 0VK sing 38 n n C6 H3 0VK sing 39 n n C48 H4 0VK sing 40 n n C48 H5 0VK sing 41 n n O49 H6 0VK sing 42 n n C52 H7 0VK sing 43 n n C52 H8 0VK sing 44 n n O53 H9 0VK sing 45 n n C10 H10 0VK sing 46 n n C10 H11 0VK sing 47 n n C17 H12 0VK sing 48 n n C20 H13 0VK sing 49 n n C21 H14 0VK sing 50 n n C8 H15 0VK sing 51 n n C8 H16 0VK sing 52 n n C8 H17 0VK sing 53 n n C9 H18 0VK sing 54 n n C12 H19 0VK sing 55 n n C13 H20 0VK sing 56 n n C15 H21 0VK sing 57 n n C15 H22 0VK sing 58 n n C22 H23 0VK sing 59 n n C22 H24 0VK sing 60 n n C25 H25 0VK sing 61 n n C25 H26 0VK sing 62 n n C26 H27 0VK sing 63 n n C26 H28 0VK sing 64 n n O2 H29 0VK sing 65 n n C28 H30 0VK sing 66 n n C28 H31 0VK sing 67 n n C28 H32 0VK sing 68 n n C29 H33 0VK sing 69 n n C29 H34 0VK sing 70 n n C29 H35 0VK sing 71 n n C23 H36 0VK sing 72 n n C23 H37 0VK sing 73 n n C23 H38 0VK sing 74 n n # _atom_sites.entry_id 4G1D _atom_sites.fract_transf_matrix[1][1] 0.015086 _atom_sites.fract_transf_matrix[1][2] 0.00871 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0VK A 1 501 525 0VK 472 . D 4 HOH A 1 601 1 HOH TIP . D 4 HOH A 2 602 2 HOH TIP . D 4 HOH A 3 603 3 HOH TIP . D 4 HOH A 4 604 4 HOH TIP . D 4 HOH A 5 605 5 HOH TIP . D 4 HOH A 6 606 6 HOH TIP . D 4 HOH A 7 607 7 HOH TIP . D 4 HOH A 8 608 8 HOH TIP . D 4 HOH A 9 609 9 HOH TIP . D 4 HOH A 10 610 10 HOH TIP . D 4 HOH A 11 611 11 HOH TIP . D 4 HOH A 12 612 12 HOH TIP . D 4 HOH A 13 613 13 HOH TIP . D 4 HOH A 14 614 14 HOH TIP . D 4 HOH A 15 615 15 HOH TIP . D 4 HOH A 16 616 16 HOH TIP . D 4 HOH A 17 617 17 HOH TIP . D 4 HOH A 18 618 18 HOH TIP . D 4 HOH A 19 619 19 HOH TIP . D 4 HOH A 20 620 20 HOH TIP . D 4 HOH A 21 621 21 HOH TIP . D 4 HOH A 22 622 22 HOH TIP . D 4 HOH A 23 623 23 HOH TIP . D 4 HOH A 24 624 24 HOH TIP . D 4 HOH A 25 625 25 HOH TIP . D 4 HOH A 26 626 26 HOH TIP . D 4 HOH A 27 627 27 HOH TIP . D 4 HOH A 28 628 28 HOH TIP . D 4 HOH A 29 629 29 HOH TIP . D 4 HOH A 30 630 30 HOH TIP . D 4 HOH A 31 631 32 HOH TIP . D 4 HOH A 32 632 35 HOH TIP . D 4 HOH A 33 633 36 HOH TIP . D 4 HOH A 34 634 37 HOH TIP . D 4 HOH A 35 635 38 HOH TIP . D 4 HOH A 36 636 39 HOH TIP . D 4 HOH A 37 637 40 HOH TIP . D 4 HOH A 38 638 41 HOH TIP . D 4 HOH A 39 639 42 HOH TIP . D 4 HOH A 40 640 43 HOH TIP . D 4 HOH A 41 641 44 HOH TIP . D 4 HOH A 42 642 45 HOH TIP . D 4 HOH A 43 643 46 HOH TIP . D 4 HOH A 44 644 47 HOH TIP . D 4 HOH A 45 645 48 HOH TIP . D 4 HOH A 46 646 49 HOH TIP . E 4 HOH B 1 701 31 HOH TIP . E 4 HOH B 2 702 34 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0VK . . . C 3 2.348 39.237 37.772 1 52.05 ? C1 0VK 501 A 1 HETATM 2 C C2 0VK . . . C 3 1.996 40.523 38.289 1 52.05 ? C2 0VK 501 A 1 HETATM 3 C C3 0VK . . . C 3 0.529 40.799 38.681 1 52.05 ? C3 0VK 501 A 1 HETATM 4 C C4 0VK . . . C 3 -0.473 39.702 38.504 1 52.05 ? C4 0VK 501 A 1 HETATM 5 C C5 0VK . . . C 3 -0.03 38.402 37.961 1 52.05 ? C5 0VK 501 A 1 HETATM 6 C C6 0VK . . . C 3 1.411 38.24 37.614 1 52.05 ? C6 0VK 501 A 1 HETATM 7 C C48 0VK . . . C 3 0.061 42.121 39.235 1 52.05 ? C48 0VK 501 A 1 HETATM 8 O O49 0VK . . . C 3 0.336 42.205 40.645 1 52.05 ? O49 0VK 501 A 1 HETATM 9 C C52 0VK . . . C 3 3.141 41.508 38.397 1 52.05 ? C52 0VK 501 A 1 HETATM 10 O O53 0VK . . . C 3 4.393 40.938 37.945 1 52.05 ? O53 0VK 501 A 1 HETATM 11 C C10 0VK . . . C 3 -0.14 37.032 38.801 1 52.05 ? C10 0VK 501 A 1 HETATM 12 O O1 0VK . . . C 3 -0.183 36.028 37.642 1 44.61 ? O1 0VK 501 A 1 HETATM 13 C C14 0VK . . . C 3 -0.212 34.672 37.858 1 42.93 ? C14 0VK 501 A 1 HETATM 14 C C17 0VK . . . C 3 0.676 33.927 36.934 1 36.9 ? C17 0VK 501 A 1 HETATM 15 C C18 0VK . . . C 3 0.77 32.454 37.071 1 46.18 ? C18 0VK 501 A 1 HETATM 16 C C19 0VK . . . C 3 -0.023 31.753 38.132 1 48.77 ? C19 0VK 501 A 1 HETATM 17 C C20 0VK . . . C 3 -0.887 32.542 39.014 1 47.8 ? C20 0VK 501 A 1 HETATM 18 C C21 0VK . . . C 3 -0.977 33.979 38.876 1 38.02 ? C21 0VK 501 A 1 HETATM 19 C C8 0VK . . . C 3 0.053 30.166 38.326 1 56.89 ? C8 0VK 501 A 1 HETATM 20 C C7 0VK . . . C 3 1.641 31.786 36.156 1 42.72 ? C7 0VK 501 A 1 HETATM 21 C C9 0VK . . . C 3 1.122 31.341 34.849 1 34.97 ? C9 0VK 501 A 1 HETATM 22 C C11 0VK . . . C 3 3.121 31.521 36.545 1 42.75 ? C11 0VK 501 A 1 HETATM 23 C C12 0VK . . . C 3 3.936 30.835 35.599 1 43 ? C12 0VK 501 A 1 HETATM 24 C C13 0VK . . . C 3 1.981 30.654 33.922 1 32.77 ? C13 0VK 501 A 1 HETATM 25 C C16 0VK . . . C 3 3.448 30.369 34.278 1 32.87 ? C16 0VK 501 A 1 HETATM 26 C C15 0VK . . . C 3 3.829 31.928 37.884 1 52.38 ? C15 0VK 501 A 1 HETATM 27 C C22 0VK . . . C 3 3.651 31.082 39.019 1 67.05 ? C22 0VK 501 A 1 HETATM 28 C C24 0VK . . . C 3 4.455 29.625 33.355 1 35.59 ? C24 0VK 501 A 1 HETATM 29 C C25 0VK . . . C 3 5.41 30.612 32.539 1 34.32 ? C25 0VK 501 A 1 HETATM 30 C C26 0VK . . . C 3 3.646 28.646 32.379 1 36.69 ? C26 0VK 501 A 1 HETATM 31 O O2 0VK . . . C 3 5.256 28.772 34.2 1 42.15 ? O2 0VK 501 A 1 HETATM 32 C C28 0VK . . . C 3 4.472 27.818 31.398 1 54.44 ? C28 0VK 501 A 1 HETATM 33 C C29 0VK . . . C 3 4.749 31.622 31.571 1 34.09 ? C29 0VK 501 A 1 HETATM 34 C C23 0VK . . . C 3 4.419 31.661 40.203 1 71.3 ? C23 0VK 501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #