data_4G1V # _model_server_result.job_id R1C-bWj2HIuz1HAlLrgkkQ _model_server_result.datetime_utc '2024-10-13 17:15:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4G1V # _exptl.entry_id 4G1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G1V _cell.length_a 172.629 _cell.length_b 172.629 _cell.length_c 82.294 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4,5,6 A,B,C,D,E,F 3 1,6 A,B,C,D,E,F 4 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 38 A GLU 38 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A OE1 GLU 38 A GLU 38 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc3 A NE2 HIS 85 A HIS 85 1_555 B FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 B FE HEM . A HEM 401 1_555 E O1 NO2 . A NO2 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 410 n n N O2 NO2 sing 411 n n # _atom_sites.entry_id 4G1V _atom_sites.fract_transf_matrix[1][1] 0.005793 _atom_sites.fract_transf_matrix[1][2] 0.003344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 401 HEM HEM . C 3 FAD A 1 402 405 FAD FAD . D 4 K A 1 403 1 K K . E 5 NO2 A 1 404 1 NO2 NO2 . F 6 HOH A 1 501 3 HOH HOH . F 6 HOH A 2 502 4 HOH HOH . F 6 HOH A 3 503 6 HOH HOH . F 6 HOH A 4 504 7 HOH HOH . F 6 HOH A 5 505 8 HOH HOH . F 6 HOH A 6 506 9 HOH HOH . F 6 HOH A 7 507 10 HOH HOH . F 6 HOH A 8 508 11 HOH HOH . F 6 HOH A 9 509 12 HOH HOH . F 6 HOH A 10 510 13 HOH HOH . F 6 HOH A 11 511 14 HOH HOH . F 6 HOH A 12 512 15 HOH HOH . F 6 HOH A 13 513 16 HOH HOH . F 6 HOH A 14 514 17 HOH HOH . F 6 HOH A 15 515 18 HOH HOH . F 6 HOH A 16 516 19 HOH HOH . F 6 HOH A 17 517 20 HOH HOH . F 6 HOH A 18 518 22 HOH HOH . F 6 HOH A 19 519 23 HOH HOH . F 6 HOH A 20 520 24 HOH HOH . F 6 HOH A 21 521 25 HOH HOH . F 6 HOH A 22 522 26 HOH HOH . F 6 HOH A 23 523 27 HOH HOH . F 6 HOH A 24 524 28 HOH HOH . F 6 HOH A 25 525 29 HOH HOH . F 6 HOH A 26 526 30 HOH HOH . F 6 HOH A 27 527 31 HOH HOH . F 6 HOH A 28 528 32 HOH HOH . F 6 HOH A 29 529 33 HOH HOH . F 6 HOH A 30 530 34 HOH HOH . F 6 HOH A 31 531 35 HOH HOH . F 6 HOH A 32 532 36 HOH HOH . F 6 HOH A 33 533 37 HOH HOH . F 6 HOH A 34 534 38 HOH HOH . F 6 HOH A 35 535 39 HOH HOH . F 6 HOH A 36 536 40 HOH HOH . F 6 HOH A 37 537 41 HOH HOH . F 6 HOH A 38 538 42 HOH HOH . F 6 HOH A 39 539 43 HOH HOH . F 6 HOH A 40 540 44 HOH HOH . F 6 HOH A 41 541 45 HOH HOH . F 6 HOH A 42 542 46 HOH HOH . F 6 HOH A 43 543 47 HOH HOH . F 6 HOH A 44 544 48 HOH HOH . F 6 HOH A 45 545 49 HOH HOH . F 6 HOH A 46 546 50 HOH HOH . F 6 HOH A 47 547 51 HOH HOH . F 6 HOH A 48 548 52 HOH HOH . F 6 HOH A 49 549 53 HOH HOH . F 6 HOH A 50 550 54 HOH HOH . F 6 HOH A 51 551 55 HOH HOH . F 6 HOH A 52 552 56 HOH HOH . F 6 HOH A 53 553 57 HOH HOH . F 6 HOH A 54 554 58 HOH HOH . F 6 HOH A 55 555 59 HOH HOH . F 6 HOH A 56 556 60 HOH HOH . F 6 HOH A 57 557 61 HOH HOH . F 6 HOH A 58 558 62 HOH HOH . F 6 HOH A 59 559 63 HOH HOH . F 6 HOH A 60 560 64 HOH HOH . F 6 HOH A 61 561 66 HOH HOH . F 6 HOH A 62 562 67 HOH HOH . F 6 HOH A 63 563 68 HOH HOH . F 6 HOH A 64 564 69 HOH HOH . F 6 HOH A 65 565 70 HOH HOH . F 6 HOH A 66 566 71 HOH HOH . F 6 HOH A 67 567 72 HOH HOH . F 6 HOH A 68 568 73 HOH HOH . F 6 HOH A 69 569 74 HOH HOH . F 6 HOH A 70 570 75 HOH HOH . F 6 HOH A 71 571 76 HOH HOH . F 6 HOH A 72 572 77 HOH HOH . F 6 HOH A 73 573 78 HOH HOH . F 6 HOH A 74 574 79 HOH HOH . F 6 HOH A 75 575 80 HOH HOH . F 6 HOH A 76 576 81 HOH HOH . F 6 HOH A 77 577 82 HOH HOH . F 6 HOH A 78 578 83 HOH HOH . F 6 HOH A 79 579 84 HOH HOH . F 6 HOH A 80 580 85 HOH HOH . F 6 HOH A 81 581 86 HOH HOH . F 6 HOH A 82 582 87 HOH HOH . F 6 HOH A 83 583 88 HOH HOH . F 6 HOH A 84 584 89 HOH HOH . F 6 HOH A 85 585 90 HOH HOH . F 6 HOH A 86 586 91 HOH HOH . F 6 HOH A 87 587 92 HOH HOH . F 6 HOH A 88 588 93 HOH HOH . F 6 HOH A 89 589 94 HOH HOH . F 6 HOH A 90 590 95 HOH HOH . F 6 HOH A 91 591 96 HOH HOH . F 6 HOH A 92 592 97 HOH HOH . F 6 HOH A 93 593 98 HOH HOH . F 6 HOH A 94 594 99 HOH HOH . F 6 HOH A 95 595 101 HOH HOH . F 6 HOH A 96 596 102 HOH HOH . F 6 HOH A 97 597 103 HOH HOH . F 6 HOH A 98 598 104 HOH HOH . F 6 HOH A 99 599 106 HOH HOH . F 6 HOH A 100 600 107 HOH HOH . F 6 HOH A 101 601 108 HOH HOH . F 6 HOH A 102 602 110 HOH HOH . F 6 HOH A 103 603 111 HOH HOH . F 6 HOH A 104 604 112 HOH HOH . F 6 HOH A 105 605 113 HOH HOH . F 6 HOH A 106 606 114 HOH HOH . F 6 HOH A 107 607 115 HOH HOH . F 6 HOH A 108 608 116 HOH HOH . F 6 HOH A 109 609 117 HOH HOH . F 6 HOH A 110 610 118 HOH HOH . F 6 HOH A 111 611 119 HOH HOH . F 6 HOH A 112 612 120 HOH HOH . F 6 HOH A 113 613 121 HOH HOH . F 6 HOH A 114 614 122 HOH HOH . F 6 HOH A 115 615 123 HOH HOH . F 6 HOH A 116 616 124 HOH HOH . F 6 HOH A 117 617 125 HOH HOH . F 6 HOH A 118 618 126 HOH HOH . F 6 HOH A 119 619 127 HOH HOH . F 6 HOH A 120 620 128 HOH HOH . F 6 HOH A 121 621 129 HOH HOH . F 6 HOH A 122 622 130 HOH HOH . F 6 HOH A 123 623 131 HOH HOH . F 6 HOH A 124 624 132 HOH HOH . F 6 HOH A 125 625 133 HOH HOH . F 6 HOH A 126 626 134 HOH HOH . F 6 HOH A 127 627 135 HOH HOH . F 6 HOH A 128 628 136 HOH HOH . F 6 HOH A 129 629 137 HOH HOH . F 6 HOH A 130 630 138 HOH HOH . F 6 HOH A 131 631 139 HOH HOH . F 6 HOH A 132 632 140 HOH HOH . F 6 HOH A 133 633 141 HOH HOH . F 6 HOH A 134 634 142 HOH HOH . F 6 HOH A 135 635 143 HOH HOH . F 6 HOH A 136 636 144 HOH HOH . F 6 HOH A 137 637 145 HOH HOH . F 6 HOH A 138 638 146 HOH HOH . F 6 HOH A 139 639 147 HOH HOH . F 6 HOH A 140 640 148 HOH HOH . F 6 HOH A 141 641 149 HOH HOH . F 6 HOH A 142 642 150 HOH HOH . F 6 HOH A 143 643 151 HOH HOH . F 6 HOH A 144 644 152 HOH HOH . F 6 HOH A 145 645 153 HOH HOH . F 6 HOH A 146 646 154 HOH HOH . F 6 HOH A 147 647 155 HOH HOH . F 6 HOH A 148 648 156 HOH HOH . F 6 HOH A 149 649 157 HOH HOH . F 6 HOH A 150 650 158 HOH HOH . F 6 HOH A 151 651 159 HOH HOH . F 6 HOH A 152 652 160 HOH HOH . F 6 HOH A 153 653 161 HOH HOH . F 6 HOH A 154 654 162 HOH HOH . F 6 HOH A 155 655 163 HOH HOH . F 6 HOH A 156 656 164 HOH HOH . F 6 HOH A 157 657 165 HOH HOH . F 6 HOH A 158 658 166 HOH HOH . F 6 HOH A 159 659 167 HOH HOH . F 6 HOH A 160 660 168 HOH HOH . F 6 HOH A 161 661 169 HOH HOH . F 6 HOH A 162 662 170 HOH HOH . F 6 HOH A 163 663 171 HOH HOH . F 6 HOH A 164 664 172 HOH HOH . F 6 HOH A 165 665 173 HOH HOH . F 6 HOH A 166 666 174 HOH HOH . F 6 HOH A 167 667 175 HOH HOH . F 6 HOH A 168 668 176 HOH HOH . F 6 HOH A 169 669 177 HOH HOH . F 6 HOH A 170 670 178 HOH HOH . F 6 HOH A 171 671 179 HOH HOH . F 6 HOH A 172 672 180 HOH HOH . F 6 HOH A 173 673 181 HOH HOH . F 6 HOH A 174 674 182 HOH HOH . F 6 HOH A 175 675 183 HOH HOH . F 6 HOH A 176 676 184 HOH HOH . F 6 HOH A 177 677 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . E 5 7.051 38.08 -6.824 1 39.64 ? N NO2 404 A 1 HETATM 2 O O1 NO2 . . . E 5 5.8 38.235 -6.104 1 38.99 ? O1 NO2 404 A 1 HETATM 3 O O2 NO2 . . . E 5 7.803 37.672 -5.626 1 37.08 ? O2 NO2 404 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 3 #