data_4G1Y # _model_server_result.job_id 6QURNmpspwqbUbIZcxrOrw _model_server_result.datetime_utc '2024-11-25 00:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4G1Y # _exptl.entry_id 4G1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4E,6Z)-7-(3-{[3,4-bis(hydroxymethyl)benzyl]oxy}phenyl)-3-ethylnona-4,6-dien-3-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G1Y _cell.length_a 65.559 _cell.length_b 65.559 _cell.length_c 263.876 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 32.7795 56.775759 43.979333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H34 O4' _chem_comp.formula_weight 410.546 _chem_comp.id 0VO _chem_comp.mon_nstd_flag . _chem_comp.name (4E,6Z)-7-(3-{[3,4-bis(hydroxymethyl)benzyl]oxy}phenyl)-3-ethylnona-4,6-dien-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C25 0VO sing 1 n n C26 C28 0VO sing 2 n n C26 C24 0VO sing 3 n n C25 C24 0VO sing 4 n n C24 C16 0VO sing 5 n n C24 O2 0VO sing 6 n n C16 C12 0VO doub 7 z n C12 C11 0VO sing 8 n n C11 C7 0VO doub 9 z n C17 C18 0VO doub 10 n y C17 C14 0VO sing 11 n y C18 C7 0VO sing 12 n n C18 C19 0VO sing 13 n y C7 C9 0VO sing 14 n n C6 C1 0VO doub 15 n y C6 C5 0VO sing 16 n y O1 C14 0VO sing 17 n n O1 C10 0VO sing 18 n n C1 C2 0VO sing 19 n y C5 C4 0VO doub 20 n y C5 C10 0VO sing 21 n n O53 C52 0VO sing 22 n n C14 C21 0VO doub 23 n y C2 C52 0VO sing 24 n n C2 C3 0VO doub 25 n y C4 C3 0VO sing 26 n y C19 C20 0VO doub 27 n y C3 C48 0VO sing 28 n n C9 C8 0VO sing 29 n n C48 O49 0VO sing 30 n n C21 C20 0VO sing 31 n y C1 H1 0VO sing 32 n n C6 H2 0VO sing 33 n n C9 H4 0VO sing 34 n n C9 H5 0VO sing 35 n n C10 H6 0VO sing 36 n n C10 H7 0VO sing 37 n n C11 H8 0VO sing 38 n n C12 H10 0VO sing 39 n n C16 H12 0VO sing 40 n n C19 H14 0VO sing 41 n n C25 H15 0VO sing 42 n n C25 H16 0VO sing 43 n n C4 H17 0VO sing 44 n n C48 H18 0VO sing 45 n n C48 H19 0VO sing 46 n n O49 H20 0VO sing 47 n n C52 H21 0VO sing 48 n n C52 H22 0VO sing 49 n n O53 H23 0VO sing 50 n n C17 H24 0VO sing 51 n n C20 H25 0VO sing 52 n n C21 H26 0VO sing 53 n n C26 H27 0VO sing 54 n n C26 H28 0VO sing 55 n n O2 H29 0VO sing 56 n n C28 H30 0VO sing 57 n n C28 H31 0VO sing 58 n n C28 H32 0VO sing 59 n n C29 H33 0VO sing 60 n n C29 H34 0VO sing 61 n n C29 H35 0VO sing 62 n n C8 H36 0VO sing 63 n n C8 H37 0VO sing 64 n n C8 H38 0VO sing 65 n n # _atom_sites.entry_id 4G1Y _atom_sites.fract_transf_matrix[1][1] 0.015253 _atom_sites.fract_transf_matrix[1][2] 0.008807 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0VO A 1 501 525 0VO 393 . D 4 HOH A 1 601 1 HOH TIP . D 4 HOH A 2 602 2 HOH TIP . D 4 HOH A 3 603 3 HOH TIP . D 4 HOH A 4 604 4 HOH TIP . D 4 HOH A 5 605 5 HOH TIP . D 4 HOH A 6 606 6 HOH TIP . D 4 HOH A 7 607 7 HOH TIP . D 4 HOH A 8 608 8 HOH TIP . D 4 HOH A 9 609 9 HOH TIP . D 4 HOH A 10 610 10 HOH TIP . D 4 HOH A 11 611 11 HOH TIP . D 4 HOH A 12 612 12 HOH TIP . D 4 HOH A 13 613 13 HOH TIP . D 4 HOH A 14 614 14 HOH TIP . D 4 HOH A 15 615 15 HOH TIP . D 4 HOH A 16 616 16 HOH TIP . D 4 HOH A 17 617 17 HOH TIP . D 4 HOH A 18 618 18 HOH TIP . D 4 HOH A 19 619 20 HOH TIP . D 4 HOH A 20 620 21 HOH TIP . D 4 HOH A 21 621 22 HOH TIP . D 4 HOH A 22 622 23 HOH TIP . D 4 HOH A 23 623 24 HOH TIP . D 4 HOH A 24 624 25 HOH TIP . D 4 HOH A 25 625 26 HOH TIP . D 4 HOH A 26 626 27 HOH TIP . D 4 HOH A 27 627 28 HOH TIP . D 4 HOH A 28 628 29 HOH TIP . D 4 HOH A 29 629 30 HOH TIP . D 4 HOH A 30 630 31 HOH TIP . D 4 HOH A 31 631 33 HOH TIP . D 4 HOH A 32 632 34 HOH TIP . D 4 HOH A 33 633 35 HOH TIP . D 4 HOH A 34 634 36 HOH TIP . D 4 HOH A 35 635 37 HOH TIP . D 4 HOH A 36 636 39 HOH TIP . D 4 HOH A 37 637 40 HOH TIP . E 4 HOH B 1 801 19 HOH TIP . E 4 HOH B 2 802 32 HOH TIP . E 4 HOH B 3 803 38 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0VO . . . C 3 2.439 37.541 37.975 1 60.07 ? C1 0VO 501 A 1 HETATM 2 C C5 0VO . . . C 3 0.126 36.507 38.081 1 62 ? C5 0VO 501 A 1 HETATM 3 C C6 0VO . . . C 3 1.59 36.454 37.817 1 61.73 ? C6 0VO 501 A 1 HETATM 4 C C7 0VO . . . C 3 2.844 30.11 37.774 1 76.91 ? C7 0VO 501 A 1 HETATM 5 C C9 0VO . . . C 3 3.44 30.1 39.137 1 77.17 ? C9 0VO 501 A 1 HETATM 6 C C10 0VO . . . C 3 0.045 35.17 38.998 1 66.07 ? C10 0VO 501 A 1 HETATM 7 C C11 0VO . . . C 3 3.744 29.727 36.553 1 75.04 ? C11 0VO 501 A 1 HETATM 8 C C12 0VO . . . C 3 3.162 29.109 35.419 1 72.77 ? C12 0VO 501 A 1 HETATM 9 C C16 0VO . . . C 3 3.591 29.385 34.036 1 72.94 ? C16 0VO 501 A 1 HETATM 10 C C18 0VO . . . C 3 1.446 30.516 37.549 1 77.34 ? C18 0VO 501 A 1 HETATM 11 C C19 0VO . . . C 3 0.619 29.818 38.592 1 79.78 ? C19 0VO 501 A 1 HETATM 12 C C24 0VO . . . C 3 4.689 28.499 33.367 1 72.34 ? C24 0VO 501 A 1 HETATM 13 C C25 0VO . . . C 3 5.888 29.355 32.771 1 71.59 ? C25 0VO 501 A 1 HETATM 14 C C2 0VO . . . C 3 1.956 38.821 38.411 1 60.32 ? C2 0VO 501 A 1 HETATM 15 C C3 0VO . . . C 3 0.456 38.983 38.713 1 59.37 ? C3 0VO 501 A 1 HETATM 16 C C4 0VO . . . C 3 -0.444 37.794 38.537 1 60.23 ? C4 0VO 501 A 1 HETATM 17 C C48 0VO . . . C 3 -0.144 40.28 39.179 1 60.52 ? C48 0VO 501 A 1 HETATM 18 O O49 0VO . . . C 3 0.213 40.535 40.553 1 61.3 ? O49 0VO 501 A 1 HETATM 19 C C52 0VO . . . C 3 3.01 39.919 38.536 1 59.99 ? C52 0VO 501 A 1 HETATM 20 O O53 0VO . . . C 3 4.346 39.455 38.182 1 62.19 ? O53 0VO 501 A 1 HETATM 21 O O1 0VO . . . C 3 0.253 34.097 37.927 1 70.46 ? O1 0VO 501 A 1 HETATM 22 C C14 0VO . . . C 3 0.303 32.739 38.204 1 75.93 ? C14 0VO 501 A 1 HETATM 23 C C17 0VO . . . C 3 1.284 31.992 37.359 1 77.22 ? C17 0VO 501 A 1 HETATM 24 C C20 0VO . . . C 3 -0.333 30.605 39.4 1 81.33 ? C20 0VO 501 A 1 HETATM 25 C C21 0VO . . . C 3 -0.485 32.04 39.205 1 78.65 ? C21 0VO 501 A 1 HETATM 26 C C26 0VO . . . C 3 4.03 27.608 32.227 1 70.59 ? C26 0VO 501 A 1 HETATM 27 O O2 0VO . . . C 3 5.217 27.591 34.359 1 72.08 ? O2 0VO 501 A 1 HETATM 28 C C28 0VO . . . C 3 3.219 26.405 32.695 1 72.94 ? C28 0VO 501 A 1 HETATM 29 C C29 0VO . . . C 3 5.584 30.224 31.523 1 70.57 ? C29 0VO 501 A 1 HETATM 30 C C8 0VO . . . C 3 3.811 28.666 39.56 1 78.64 ? C8 0VO 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #