data_4G21 # _model_server_result.job_id zzFRqQ1MOBy_1jxmEAhUbQ _model_server_result.datetime_utc '2025-02-05 06:52:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4G21 # _exptl.entry_id 4G21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.647 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-(5'-{[3,4-bis(hydroxymethyl)benzyl]oxy}-2'-ethyl-2-propylbiphenyl-4-yl)pentan-3-ol" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G21 _cell.length_a 66.287 _cell.length_b 66.287 _cell.length_c 263.662 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.1435 57.406226 43.943667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H40 O4' _chem_comp.formula_weight 476.647 _chem_comp.id 0VP _chem_comp.mon_nstd_flag . _chem_comp.name "3-(5'-{[3,4-bis(hydroxymethyl)benzyl]oxy}-2'-ethyl-2-propylbiphenyl-4-yl)pentan-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C26 0VP sing 1 n n C29 C25 0VP sing 2 n n C26 C24 0VP sing 3 n n C25 C24 0VP sing 4 n n C24 C16 0VP sing 5 n n C24 O2 0VP sing 6 n n C13 C16 0VP doub 7 n y C13 C9 0VP sing 8 n y C16 C12 0VP sing 9 n y C9 C7 0VP doub 10 n y C12 C11 0VP doub 11 n y C7 C11 0VP sing 12 n y C7 C18 0VP sing 13 n n C11 C15 0VP sing 14 n n C17 C18 0VP doub 15 n y C17 C14 0VP sing 16 n y C18 C19 0VP sing 17 n y C27 C8 0VP sing 18 n n O1 C14 0VP sing 19 n n O1 C10 0VP sing 20 n n C6 C1 0VP doub 21 n y C6 C5 0VP sing 22 n y C14 C21 0VP doub 23 n y C1 C2 0VP sing 24 n y C15 C22 0VP sing 25 n n C19 C8 0VP sing 26 n n C19 C20 0VP doub 27 n y C5 C4 0VP doub 28 n y C5 C10 0VP sing 29 n n O53 C52 0VP sing 30 n n C2 C52 0VP sing 31 n n C2 C3 0VP doub 32 n y C4 C3 0VP sing 33 n y C21 C20 0VP sing 34 n y C3 C48 0VP sing 35 n n C22 C23 0VP sing 36 n n C48 O49 0VP sing 37 n n O2 H1 0VP sing 38 n n C9 H2 0VP sing 39 n n C10 H3 0VP sing 40 n n C10 H4 0VP sing 41 n n C12 H5 0VP sing 42 n n C13 H6 0VP sing 43 n n C15 H7 0VP sing 44 n n C15 H8 0VP sing 45 n n C17 H9 0VP sing 46 n n C20 H10 0VP sing 47 n n C21 H11 0VP sing 48 n n C22 H12 0VP sing 49 n n C22 H13 0VP sing 50 n n C23 H14 0VP sing 51 n n C23 H15 0VP sing 52 n n C23 H16 0VP sing 53 n n C25 H17 0VP sing 54 n n C25 H18 0VP sing 55 n n C26 H19 0VP sing 56 n n C26 H20 0VP sing 57 n n C27 H21 0VP sing 58 n n C27 H22 0VP sing 59 n n C27 H23 0VP sing 60 n n C28 H24 0VP sing 61 n n C28 H25 0VP sing 62 n n C28 H26 0VP sing 63 n n C29 H27 0VP sing 64 n n C29 H28 0VP sing 65 n n C29 H29 0VP sing 66 n n C1 H30 0VP sing 67 n n C4 H31 0VP sing 68 n n C6 H32 0VP sing 69 n n C48 H33 0VP sing 70 n n C48 H34 0VP sing 71 n n O49 H35 0VP sing 72 n n C52 H36 0VP sing 73 n n C52 H37 0VP sing 74 n n O53 H38 0VP sing 75 n n C8 H39 0VP sing 76 n n C8 H40 0VP sing 77 n n # _atom_sites.entry_id 4G21 _atom_sites.fract_transf_matrix[1][1] 0.015086 _atom_sites.fract_transf_matrix[1][2] 0.00871 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0VP A 1 501 525 0VP C47 . D 4 HOH A 1 601 1 HOH TIP . D 4 HOH A 2 602 2 HOH TIP . D 4 HOH A 3 603 3 HOH TIP . D 4 HOH A 4 604 4 HOH TIP . D 4 HOH A 5 605 5 HOH TIP . D 4 HOH A 6 606 6 HOH TIP . D 4 HOH A 7 607 7 HOH TIP . D 4 HOH A 8 608 8 HOH TIP . D 4 HOH A 9 609 9 HOH TIP . D 4 HOH A 10 610 10 HOH TIP . D 4 HOH A 11 611 11 HOH TIP . D 4 HOH A 12 612 12 HOH TIP . D 4 HOH A 13 613 13 HOH TIP . D 4 HOH A 14 614 14 HOH TIP . D 4 HOH A 15 615 15 HOH TIP . D 4 HOH A 16 616 16 HOH TIP . D 4 HOH A 17 617 17 HOH TIP . D 4 HOH A 18 618 18 HOH TIP . D 4 HOH A 19 619 19 HOH TIP . D 4 HOH A 20 620 20 HOH TIP . D 4 HOH A 21 621 21 HOH TIP . D 4 HOH A 22 622 22 HOH TIP . D 4 HOH A 23 623 23 HOH TIP . D 4 HOH A 24 624 24 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 0VP . . . C 3 0.25 35.387 37.605 1 55.7 ? O1 0VP 501 A 1 HETATM 2 O O2 0VP . . . C 3 5.704 28.202 34.056 1 47.9 ? O2 0VP 501 A 1 HETATM 3 C C9 0VP . . . C 3 1.488 30.603 34.668 1 50.57 ? C9 0VP 501 A 1 HETATM 4 C C10 0VP . . . C 3 0.13 36.379 38.746 1 55.88 ? C10 0VP 501 A 1 HETATM 5 C C11 0VP . . . C 3 3.453 30.927 36.343 1 51.09 ? C11 0VP 501 A 1 HETATM 6 C C12 0VP . . . C 3 4.307 30.263 35.419 1 50.29 ? C12 0VP 501 A 1 HETATM 7 C C13 0VP . . . C 3 2.388 29.937 33.763 1 50.49 ? C13 0VP 501 A 1 HETATM 8 C C14 0VP . . . C 3 0.147 33.998 37.733 1 53.06 ? C14 0VP 501 A 1 HETATM 9 C C15 0VP . . . C 3 4.117 31.409 37.672 1 48.46 ? C15 0VP 501 A 1 HETATM 10 C C16 0VP . . . C 3 3.848 29.741 34.122 1 49.63 ? C16 0VP 501 A 1 HETATM 11 C C17 0VP . . . C 3 1.047 33.239 36.826 1 53.62 ? C17 0VP 501 A 1 HETATM 12 C C18 0VP . . . C 3 1.048 31.755 36.879 1 53.49 ? C18 0VP 501 A 1 HETATM 13 C C19 0VP . . . C 3 0.149 31.063 37.839 1 54.46 ? C19 0VP 501 A 1 HETATM 14 C C20 0VP . . . C 3 -0.721 31.849 38.706 1 54.38 ? C20 0VP 501 A 1 HETATM 15 C C21 0VP . . . C 3 -0.723 33.291 38.655 1 52.71 ? C21 0VP 501 A 1 HETATM 16 C C22 0VP . . . C 3 3.865 30.62 38.861 1 51.33 ? C22 0VP 501 A 1 HETATM 17 C C24 0VP . . . C 3 4.881 29.018 33.203 1 48.57 ? C24 0VP 501 A 1 HETATM 18 C C25 0VP . . . C 3 4.125 28.03 32.21 1 47.63 ? C25 0VP 501 A 1 HETATM 19 C C26 0VP . . . C 3 5.817 30.01 32.406 1 46.96 ? C26 0VP 501 A 1 HETATM 20 C C27 0VP . . . C 3 -0.618 28.76 36.833 1 56.12 ? C27 0VP 501 A 1 HETATM 21 C C28 0VP . . . C 3 5.113 30.988 31.433 1 40.47 ? C28 0VP 501 A 1 HETATM 22 C C29 0VP . . . C 3 5.009 27.233 31.246 1 51.25 ? C29 0VP 501 A 1 HETATM 23 C C1 0VP . . . C 3 2.729 38.719 37.915 1 54.79 ? C1 0VP 501 A 1 HETATM 24 C C2 0VP . . . C 3 2.288 39.981 38.422 1 55.07 ? C2 0VP 501 A 1 HETATM 25 C C3 0VP . . . C 3 0.804 40.187 38.713 1 55.79 ? C3 0VP 501 A 1 HETATM 26 C C4 0VP . . . C 3 -0.133 39.057 38.454 1 54.89 ? C4 0VP 501 A 1 HETATM 27 C C5 0VP . . . C 3 0.38 37.784 37.925 1 55.04 ? C5 0VP 501 A 1 HETATM 28 C C6 0VP . . . C 3 1.837 37.677 37.677 1 55.09 ? C6 0VP 501 A 1 HETATM 29 C C48 0VP . . . C 3 0.242 41.49 39.251 1 57.05 ? C48 0VP 501 A 1 HETATM 30 O O49 0VP . . . C 3 0.582 41.666 40.634 1 60.76 ? O49 0VP 501 A 1 HETATM 31 C C52 0VP . . . C 3 3.373 41.027 38.63 1 55.15 ? C52 0VP 501 A 1 HETATM 32 O O53 0VP . . . C 3 4.609 40.653 37.976 1 54.58 ? O53 0VP 501 A 1 HETATM 33 C C8 0VP . . . C 3 0.12 29.476 37.953 1 54.16 ? C8 0VP 501 A 1 HETATM 34 C C7 0VP . . . C 3 1.967 31.107 35.96 1 51.68 ? C7 0VP 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #