data_4G27 # _model_server_result.job_id Mo_Md9Wu1z2buI9Oqs1Ckw _model_server_result.datetime_utc '2024-12-26 10:15:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1006}' # _entry.id 4G27 # _exptl.entry_id 4G27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.151 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-phenylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.31 _cell.angle_gamma 90 _cell.entry_id 4G27 _cell.length_a 76.46 _cell.length_b 66.87 _cell.length_c 65.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 72.699507 0 65.021347 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 21 R ASP 20 1_555 D CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 B OD1 ASP 23 R ASP 22 1_555 D CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc3 B OD2 ASP 23 R ASP 22 1_555 D CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? metalc ? metalc4 B OD1 ASP 25 R ASP 24 1_555 D CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 B O THR 27 R THR 26 1_555 D CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 B OE2 GLU 32 R GLU 31 1_555 D CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc7 B OE1 GLU 32 R GLU 31 1_555 D CA CA . R CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc8 B OD1 ASP 57 R ASP 56 1_555 E CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc9 B OD2 ASP 59 R ASP 58 1_555 E CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 B OD1 ASN 61 R ASN 60 1_555 E CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc11 B O THR 63 R THR 62 1_555 E CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc12 B OE2 GLU 68 R GLU 67 1_555 E CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc13 B OE1 GLU 68 R GLU 67 1_555 E CA CA . R CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc14 D CA CA . R CA 1001 1_555 K O HOH . R HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc15 E CA CA . R CA 1002 1_555 K O HOH . R HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? # _chem_comp.formula 'C7 H8 N2 O' _chem_comp.formula_weight 136.151 _chem_comp.id PHU _chem_comp.mon_nstd_flag . _chem_comp.name 1-phenylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Phenylurea # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PHU doub 260 n n C1 N2 PHU sing 261 n n C1 N1 PHU sing 262 n n C3 C2 PHU doub 263 n y N1 C2 PHU sing 264 n n C2 C4 PHU sing 265 n y C3 C6 PHU sing 266 n y C3 H3 PHU sing 267 n n C4 C5 PHU doub 268 n y C4 H4 PHU sing 269 n n C7 C5 PHU sing 270 n y C5 H5 PHU sing 271 n n C6 C7 PHU doub 272 n y C6 H6 PHU sing 273 n n C7 H7 PHU sing 274 n n N1 HN1 PHU sing 275 n n N2 HN2 PHU sing 276 n n N2 HN2A PHU sing 277 n n # _atom_sites.entry_id 4G27 _atom_sites.fract_transf_matrix[1][1] 0.013079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000756 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 501 2 SO4 SO4 . D 4 CA R 1 1001 1001 CA CA . E 4 CA R 1 1002 1002 CA CA . F 5 GOL R 1 1003 1 GOL GOL . G 3 SO4 R 1 1004 3 SO4 SO4 . H 3 SO4 R 1 1005 4 SO4 SO4 . I 6 PHU R 1 1006 1 PHU PHU . J 7 HOH B 1 601 4 HOH HOH . J 7 HOH B 2 602 13 HOH HOH . J 7 HOH B 3 603 18 HOH HOH . J 7 HOH B 4 604 23 HOH HOH . J 7 HOH B 5 605 27 HOH HOH . J 7 HOH B 6 606 28 HOH HOH . J 7 HOH B 7 607 32 HOH HOH . J 7 HOH B 8 608 36 HOH HOH . J 7 HOH B 9 609 39 HOH HOH . J 7 HOH B 10 610 42 HOH HOH . J 7 HOH B 11 611 43 HOH HOH . J 7 HOH B 12 612 47 HOH HOH . J 7 HOH B 13 613 48 HOH HOH . J 7 HOH B 14 614 49 HOH HOH . J 7 HOH B 15 615 52 HOH HOH . J 7 HOH B 16 616 56 HOH HOH . J 7 HOH B 17 617 59 HOH HOH . J 7 HOH B 18 618 60 HOH HOH . J 7 HOH B 19 619 61 HOH HOH . J 7 HOH B 20 620 62 HOH HOH . J 7 HOH B 21 621 65 HOH HOH . J 7 HOH B 22 622 70 HOH HOH . J 7 HOH B 23 623 71 HOH HOH . J 7 HOH B 24 624 73 HOH HOH . J 7 HOH B 25 625 76 HOH HOH . J 7 HOH B 26 626 78 HOH HOH . J 7 HOH B 27 627 79 HOH HOH . J 7 HOH B 28 628 82 HOH HOH . J 7 HOH B 29 629 84 HOH HOH . J 7 HOH B 30 630 88 HOH HOH . J 7 HOH B 31 631 91 HOH HOH . J 7 HOH B 32 632 96 HOH HOH . J 7 HOH B 33 633 97 HOH HOH . J 7 HOH B 34 634 100 HOH HOH . J 7 HOH B 35 635 101 HOH HOH . J 7 HOH B 36 636 102 HOH HOH . J 7 HOH B 37 637 103 HOH HOH . J 7 HOH B 38 638 106 HOH HOH . J 7 HOH B 39 639 109 HOH HOH . J 7 HOH B 40 640 111 HOH HOH . J 7 HOH B 41 641 116 HOH HOH . J 7 HOH B 42 642 121 HOH HOH . J 7 HOH B 43 643 122 HOH HOH . J 7 HOH B 44 644 123 HOH HOH . J 7 HOH B 45 645 127 HOH HOH . J 7 HOH B 46 646 129 HOH HOH . J 7 HOH B 47 647 130 HOH HOH . J 7 HOH B 48 648 132 HOH HOH . J 7 HOH B 49 649 135 HOH HOH . J 7 HOH B 50 650 136 HOH HOH . J 7 HOH B 51 651 138 HOH HOH . J 7 HOH B 52 652 142 HOH HOH . J 7 HOH B 53 653 144 HOH HOH . J 7 HOH B 54 654 145 HOH HOH . J 7 HOH B 55 655 150 HOH HOH . J 7 HOH B 56 656 152 HOH HOH . J 7 HOH B 57 657 156 HOH HOH . J 7 HOH B 58 658 158 HOH HOH . J 7 HOH B 59 659 160 HOH HOH . J 7 HOH B 60 660 164 HOH HOH . J 7 HOH B 61 661 165 HOH HOH . J 7 HOH B 62 662 170 HOH HOH . J 7 HOH B 63 663 184 HOH HOH . J 7 HOH B 64 664 185 HOH HOH . J 7 HOH B 65 665 187 HOH HOH . J 7 HOH B 66 666 189 HOH HOH . J 7 HOH B 67 667 192 HOH HOH . J 7 HOH B 68 668 196 HOH HOH . J 7 HOH B 69 669 199 HOH HOH . J 7 HOH B 70 670 203 HOH HOH . J 7 HOH B 71 671 206 HOH HOH . J 7 HOH B 72 672 210 HOH HOH . K 7 HOH R 1 1101 33 HOH HOH . K 7 HOH R 2 1102 1 HOH HOH . K 7 HOH R 3 1103 2 HOH HOH . K 7 HOH R 4 1104 3 HOH HOH . K 7 HOH R 5 1105 5 HOH HOH . K 7 HOH R 6 1106 6 HOH HOH . K 7 HOH R 7 1107 7 HOH HOH . K 7 HOH R 8 1108 8 HOH HOH . K 7 HOH R 9 1109 9 HOH HOH . K 7 HOH R 10 1110 10 HOH HOH . K 7 HOH R 11 1111 11 HOH HOH . K 7 HOH R 12 1112 12 HOH HOH . K 7 HOH R 13 1113 14 HOH HOH . K 7 HOH R 14 1114 15 HOH HOH . K 7 HOH R 15 1115 16 HOH HOH . K 7 HOH R 16 1116 17 HOH HOH . K 7 HOH R 17 1117 19 HOH HOH . K 7 HOH R 18 1118 20 HOH HOH . K 7 HOH R 19 1119 21 HOH HOH . K 7 HOH R 20 1120 22 HOH HOH . K 7 HOH R 21 1121 24 HOH HOH . K 7 HOH R 22 1122 25 HOH HOH . K 7 HOH R 23 1123 26 HOH HOH . K 7 HOH R 24 1124 29 HOH HOH . K 7 HOH R 25 1125 30 HOH HOH . K 7 HOH R 26 1126 31 HOH HOH . K 7 HOH R 27 1127 34 HOH HOH . K 7 HOH R 28 1128 35 HOH HOH . K 7 HOH R 29 1129 37 HOH HOH . K 7 HOH R 30 1130 38 HOH HOH . K 7 HOH R 31 1131 40 HOH HOH . K 7 HOH R 32 1132 41 HOH HOH . K 7 HOH R 33 1133 44 HOH HOH . K 7 HOH R 34 1134 45 HOH HOH . K 7 HOH R 35 1135 46 HOH HOH . K 7 HOH R 36 1136 50 HOH HOH . K 7 HOH R 37 1137 51 HOH HOH . K 7 HOH R 38 1138 53 HOH HOH . K 7 HOH R 39 1139 54 HOH HOH . K 7 HOH R 40 1140 55 HOH HOH . K 7 HOH R 41 1141 57 HOH HOH . K 7 HOH R 42 1142 58 HOH HOH . K 7 HOH R 43 1143 63 HOH HOH . K 7 HOH R 44 1144 64 HOH HOH . K 7 HOH R 45 1145 66 HOH HOH . K 7 HOH R 46 1146 67 HOH HOH . K 7 HOH R 47 1147 68 HOH HOH . K 7 HOH R 48 1148 69 HOH HOH . K 7 HOH R 49 1149 72 HOH HOH . K 7 HOH R 50 1150 74 HOH HOH . K 7 HOH R 51 1151 75 HOH HOH . K 7 HOH R 52 1152 77 HOH HOH . K 7 HOH R 53 1153 80 HOH HOH . K 7 HOH R 54 1154 81 HOH HOH . K 7 HOH R 55 1155 83 HOH HOH . K 7 HOH R 56 1156 85 HOH HOH . K 7 HOH R 57 1157 86 HOH HOH . K 7 HOH R 58 1158 87 HOH HOH . K 7 HOH R 59 1159 89 HOH HOH . K 7 HOH R 60 1160 90 HOH HOH . K 7 HOH R 61 1161 92 HOH HOH . K 7 HOH R 62 1162 93 HOH HOH . K 7 HOH R 63 1163 94 HOH HOH . K 7 HOH R 64 1164 95 HOH HOH . K 7 HOH R 65 1165 98 HOH HOH . K 7 HOH R 66 1166 99 HOH HOH . K 7 HOH R 67 1167 104 HOH HOH . K 7 HOH R 68 1168 105 HOH HOH . K 7 HOH R 69 1169 107 HOH HOH . K 7 HOH R 70 1170 108 HOH HOH . K 7 HOH R 71 1171 110 HOH HOH . K 7 HOH R 72 1172 112 HOH HOH . K 7 HOH R 73 1173 113 HOH HOH . K 7 HOH R 74 1174 114 HOH HOH . K 7 HOH R 75 1175 115 HOH HOH . K 7 HOH R 76 1176 117 HOH HOH . K 7 HOH R 77 1177 118 HOH HOH . K 7 HOH R 78 1178 119 HOH HOH . K 7 HOH R 79 1179 120 HOH HOH . K 7 HOH R 80 1180 124 HOH HOH . K 7 HOH R 81 1181 125 HOH HOH . K 7 HOH R 82 1182 128 HOH HOH . K 7 HOH R 83 1183 131 HOH HOH . K 7 HOH R 84 1184 133 HOH HOH . K 7 HOH R 85 1185 134 HOH HOH . K 7 HOH R 86 1186 137 HOH HOH . K 7 HOH R 87 1187 139 HOH HOH . K 7 HOH R 88 1188 140 HOH HOH . K 7 HOH R 89 1189 141 HOH HOH . K 7 HOH R 90 1190 143 HOH HOH . K 7 HOH R 91 1191 146 HOH HOH . K 7 HOH R 92 1192 147 HOH HOH . K 7 HOH R 93 1193 148 HOH HOH . K 7 HOH R 94 1194 149 HOH HOH . K 7 HOH R 95 1195 151 HOH HOH . K 7 HOH R 96 1196 153 HOH HOH . K 7 HOH R 97 1197 154 HOH HOH . K 7 HOH R 98 1198 155 HOH HOH . K 7 HOH R 99 1199 157 HOH HOH . K 7 HOH R 100 1200 159 HOH HOH . K 7 HOH R 101 1201 161 HOH HOH . K 7 HOH R 102 1202 162 HOH HOH . K 7 HOH R 103 1203 163 HOH HOH . K 7 HOH R 104 1204 166 HOH HOH . K 7 HOH R 105 1205 167 HOH HOH . K 7 HOH R 106 1206 168 HOH HOH . K 7 HOH R 107 1207 169 HOH HOH . K 7 HOH R 108 1208 171 HOH HOH . K 7 HOH R 109 1209 172 HOH HOH . K 7 HOH R 110 1210 173 HOH HOH . K 7 HOH R 111 1211 174 HOH HOH . K 7 HOH R 112 1212 175 HOH HOH . K 7 HOH R 113 1213 176 HOH HOH . K 7 HOH R 114 1214 177 HOH HOH . K 7 HOH R 115 1215 178 HOH HOH . K 7 HOH R 116 1216 180 HOH HOH . K 7 HOH R 117 1217 181 HOH HOH . K 7 HOH R 118 1218 182 HOH HOH . K 7 HOH R 119 1219 183 HOH HOH . K 7 HOH R 120 1220 186 HOH HOH . K 7 HOH R 121 1221 188 HOH HOH . K 7 HOH R 122 1222 190 HOH HOH . K 7 HOH R 123 1223 191 HOH HOH . K 7 HOH R 124 1224 193 HOH HOH . K 7 HOH R 125 1225 195 HOH HOH . K 7 HOH R 126 1226 197 HOH HOH . K 7 HOH R 127 1227 198 HOH HOH . K 7 HOH R 128 1228 200 HOH HOH . K 7 HOH R 129 1229 201 HOH HOH . K 7 HOH R 130 1230 202 HOH HOH . K 7 HOH R 131 1231 204 HOH HOH . K 7 HOH R 132 1232 205 HOH HOH . K 7 HOH R 133 1233 207 HOH HOH . K 7 HOH R 134 1234 208 HOH HOH . K 7 HOH R 135 1235 209 HOH HOH . K 7 HOH R 136 1236 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PHU . . . I 6 36.213 52.51 49.532 1 33.22 ? C1 PHU 1006 R 1 HETATM 2 C C2 PHU . . . I 6 34.777 50.866 50.724 1 29.31 ? C2 PHU 1006 R 1 HETATM 3 C C3 PHU . . . I 6 33.705 51.724 50.929 1 30.57 ? C3 PHU 1006 R 1 HETATM 4 C C4 PHU . . . I 6 34.795 49.625 51.347 1 38 ? C4 PHU 1006 R 1 HETATM 5 C C5 PHU . . . I 6 33.746 49.253 52.171 1 43.84 ? C5 PHU 1006 R 1 HETATM 6 C C6 PHU . . . I 6 32.659 51.337 51.752 1 40.29 ? C6 PHU 1006 R 1 HETATM 7 C C7 PHU . . . I 6 32.681 50.105 52.373 1 47.53 ? C7 PHU 1006 R 1 HETATM 8 N N1 PHU . . . I 6 35.899 51.251 49.955 1 27.6 ? N1 PHU 1006 R 1 HETATM 9 N N2 PHU . . . I 6 37.366 52.612 48.874 1 33.62 ? N2 PHU 1006 R 1 HETATM 10 O O1 PHU . . . I 6 35.475 53.479 49.752 1 39.61 ? O1 PHU 1006 R 1 HETATM 11 H H4 PHU . . . I 6 35.619 48.927 51.205 1 45.53 ? H4 PHU 1006 R 1 HETATM 12 H HN1 PHU . . . I 6 36.5 50.467 49.722 1 33.05 ? HN1 PHU 1006 R 1 HETATM 13 H HN2 PHU . . . I 6 37.656 53.523 48.533 1 40.28 ? HN2 PHU 1006 R 1 HETATM 14 H HN2A PHU . . . I 6 38.006 51.851 48.671 1 40.28 ? HN2A PHU 1006 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #