data_4G2L
#
_model_server_result.job_id            Db1I6ZL9YBjEleNkW6GPlA 
_model_server_result.datetime_utc      '2025-07-07 23:19:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":903}' 
#
_entry.id    4G2L 
#
_exptl.entry_id    4G2L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              365.432 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-cyclopentyl-6-{(1R)-1-[3-(pyrimidin-2-yl)azetidin-1-yl]ethyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4G2L 
_cell.length_a            104.226 
_cell.length_b            104.226 
_cell.length_c            270.476 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G2L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
A,C,D,E 3 1 
B,F,G,H 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_645 -y+3/2,x-1/2,z+1/4 0 -1 0 1 0 0 0 0 1 156.339 -52.113 67.619 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 79 A HIS 256 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 A NE2 HIS 115 A HIS 292 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 A OD2 ASP 116 A ASP 293 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc4 A OD1 ASP 116 A ASP 293 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc5 A OD1 ASP 225 A ASP 402 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc6 B NE2 HIS 79 B HIS 256 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc7 B NE2 HIS 115 B HIS 292 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc8 B OD2 ASP 116 B ASP 293 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc9 B OD1 ASP 116 B ASP 293 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc10 B OD1 ASP 225 B ASP 402 1_555 F ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
#
_chem_comp.formula           'C19 H23 N7 O' 
_chem_comp.formula_weight    365.432 
_chem_comp.id                0WL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-cyclopentyl-6-{(1R)-1-[3-(pyrimidin-2-yl)azetidin-1-yl]ethyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 N21 0WL doub 1 n y 
C3 C1 0WL sing 2 n y 
N21 C7 0WL sing 3 n y 
C1 C2 0WL doub 4 n y 
C7 C16 0WL sing 5 n n 
C7 N20 0WL doub 6 n y 
C2 N20 0WL sing 7 n y 
C16 C14 0WL sing 8 n n 
C16 C15 0WL sing 9 n n 
C10 C11 0WL sing 10 n n 
C10 C12 0WL sing 11 n n 
C14 N26 0WL sing 12 n n 
C11 C13 0WL sing 13 n n 
C15 N26 0WL sing 14 n n 
C12 C17 0WL sing 15 n n 
N26 C19 0WL sing 16 n n 
C13 C17 0WL sing 17 n n 
C17 N24 0WL sing 18 n n 
C19 C18 0WL sing 19 n n 
C19 C9 0WL sing 20 n n 
N23 C9 0WL doub 21 n n 
N23 C6 0WL sing 22 n n 
N24 C6 0WL sing 23 n y 
N24 N22 0WL sing 24 n y 
C9 N25 0WL sing 25 n n 
C6 C5 0WL doub 26 n y 
N22 C4 0WL doub 27 n y 
N25 C8 0WL sing 28 n n 
C5 C4 0WL sing 29 n y 
C5 C8 0WL sing 30 n n 
C8 O27 0WL doub 31 n n 
C1 H1 0WL sing 32 n n 
C2 H2 0WL sing 33 n n 
C3 H3 0WL sing 34 n n 
C4 H4 0WL sing 35 n n 
C10 H5 0WL sing 36 n n 
C10 H6 0WL sing 37 n n 
C11 H7 0WL sing 38 n n 
C11 H8 0WL sing 39 n n 
C12 H9 0WL sing 40 n n 
C12 H10 0WL sing 41 n n 
C13 H11 0WL sing 42 n n 
C13 H12 0WL sing 43 n n 
C14 H13 0WL sing 44 n n 
C14 H14 0WL sing 45 n n 
C15 H15 0WL sing 46 n n 
C15 H16 0WL sing 47 n n 
C16 H17 0WL sing 48 n n 
C17 H18 0WL sing 49 n n 
C18 H19 0WL sing 50 n n 
C18 H20 0WL sing 51 n n 
C18 H21 0WL sing 52 n n 
C19 H22 0WL sing 53 n n 
N25 H23 0WL sing 54 n n 
#
_atom_sites.entry_id                     4G2L 
_atom_sites.fract_transf_matrix[1][1]    0.009595 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009595 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003697 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 901 901 ZN ZN . 
D 3 MG A 1 902 902 MG MG . 
E 4 0WL A 1 903 900 0WL LIG . 
F 2 ZN B 1 901 901 ZN ZN . 
G 3 MG B 1 902 902 MG MG . 
H 4 0WL B 1 903 900 0WL LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 0WL . . . H 4 96.776 16.686 15.909 1 69.36 ? C1 0WL 903 B 1 
HETATM 2 C C2 0WL . . . H 4 96.457 18.01 16.28 1 69.14 ? C2 0WL 903 B 1 
HETATM 3 C C3 0WL . . . H 4 97.575 16.454 14.797 1 68.76 ? C3 0WL 903 B 1 
HETATM 4 C C4 0WL . . . H 4 96.492 24.772 8.521 1 32.21 ? C4 0WL 903 B 1 
HETATM 5 C C5 0WL . . . H 4 97.066 23.504 8.745 1 33.1 ? C5 0WL 903 B 1 
HETATM 6 C C6 0WL . . . H 4 97.374 23.501 10.069 1 33.05 ? C6 0WL 903 B 1 
HETATM 7 C C7 0WL . . . H 4 97.625 18.758 14.594 1 65.56 ? C7 0WL 903 B 1 
HETATM 8 C C8 0WL . . . H 4 97.367 22.352 7.941 1 34.35 ? C8 0WL 903 B 1 
HETATM 9 C C9 0WL . . . H 4 98.226 21.534 10.079 1 36.29 ? C9 0WL 903 B 1 
HETATM 10 C C10 0WL . . . H 4 95.937 26.728 13.235 1 32.58 ? C10 0WL 903 B 1 
HETATM 11 C C11 0WL . . . H 4 97.301 27.324 12.983 1 31.93 ? C11 0WL 903 B 1 
HETATM 12 C C12 0WL . . . H 4 95.964 25.26 12.838 1 32.62 ? C12 0WL 903 B 1 
HETATM 13 C C13 0WL . . . H 4 98.051 26.321 12.163 1 32.5 ? C13 0WL 903 B 1 
HETATM 14 C C14 0WL . . . H 4 99.259 19.538 12.863 1 54.42 ? C14 0WL 903 B 1 
HETATM 15 C C15 0WL . . . H 4 97.44 20.438 12.607 1 54.36 ? C15 0WL 903 B 1 
HETATM 16 C C16 0WL . . . H 4 98.153 19.93 13.833 1 60.84 ? C16 0WL 903 B 1 
HETATM 17 C C17 0WL . . . H 4 97.196 25.078 11.999 1 32.69 ? C17 0WL 903 B 1 
HETATM 18 C C18 0WL . . . H 4 100.382 20.354 10.521 1 41.82 ? C18 0WL 903 B 1 
HETATM 19 C C19 0WL . . . H 4 98.89 20.388 10.761 1 39.11 ? C19 0WL 903 B 1 
HETATM 20 N N20 0WL . . . H 4 96.86 19.132 15.652 1 65.58 ? N20 0WL 903 B 1 
HETATM 21 N N21 0WL . . . H 4 98.017 17.522 14.113 1 68.59 ? N21 0WL 903 B 1 
HETATM 22 N N22 0WL . . . H 4 96.466 25.502 9.635 1 31.35 ? N22 0WL 903 B 1 
HETATM 23 N N23 0WL . . . H 4 97.955 22.554 10.809 1 34.06 ? N23 0WL 903 B 1 
HETATM 24 N N24 0WL . . . H 4 96.996 24.708 10.575 1 32.1 ? N24 0WL 903 B 1 
HETATM 25 N N25 0WL . . . H 4 97.952 21.392 8.722 1 35.03 ? N25 0WL 903 B 1 
HETATM 26 N N26 0WL . . . H 4 98.807 20.722 12.167 1 49.1 ? N26 0WL 903 B 1 
HETATM 27 O O27 0WL . . . H 4 97.144 22.232 6.743 1 33.94 ? O27 0WL 903 B 1 
#
_model_server_stats.io_time_ms              127 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           27 
#