data_4G2O
#
_model_server_result.job_id            yhmKorUWXvxf4-_zjn6F7g 
_model_server_result.datetime_utc      '2024-11-12 21:12:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g2o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    4G2O 
#
_exptl.entry_id    4G2O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              220.178 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3,4,6-tetrahydroxy-5H-benzo[7]annulen-5-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4G2O 
_cell.length_a            95.727 
_cell.length_b            95.727 
_cell.length_c            80.414 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G2O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 26.804667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 179 X MET 179 1_555 A N CME 180 X CME 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CME 180 X CME 180 1_555 A N ALA 181 X ALA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale3 A C PRO 194 X PRO 194 1_555 A N CSD 195 X CSD 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale4 A C CSD 195 X CSD 195 1_555 A N HIS 196 X HIS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
#
_chem_comp.formula           'C11 H8 O5' 
_chem_comp.formula_weight    220.178 
_chem_comp.id                TIY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3,4,6-tetrahydroxy-5H-benzo[7]annulen-5-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Purpurogallin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 O14 TIY sing 346 n n 
C13 C12 TIY sing 347 n y 
C15 C13 TIY doub 348 n y 
O01 C02 TIY sing 349 n n 
C02 C15 TIY sing 350 n y 
C02 C03 TIY doub 351 n y 
C03 C04 TIY sing 352 n y 
C04 C12 TIY doub 353 n y 
C04 C05 TIY sing 354 n n 
C05 C06 TIY doub 355 n n 
C07 C06 TIY sing 356 n n 
C08 C07 TIY doub 357 n n 
C09 C03 TIY sing 358 n n 
C09 C08 TIY sing 359 n n 
O10 C09 TIY doub 360 n n 
O11 C08 TIY sing 361 n n 
O16 C15 TIY sing 362 n n 
O01 HO01 TIY sing 363 n n 
C06 H06 TIY sing 364 n n 
C07 H07 TIY sing 365 n n 
O11 H4 TIY sing 366 n n 
C12 H12 TIY sing 367 n n 
O14 HO14 TIY sing 368 n n 
O16 HO16 TIY sing 369 n n 
C05 H05 TIY sing 370 n n 
#
_atom_sites.entry_id                     4G2O 
_atom_sites.fract_transf_matrix[1][1]    0.010446 
_atom_sites.fract_transf_matrix[1][2]    0.006031 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012062 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012436 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TIY X 1 500 500 TIY P67 . 
C 3 SO4 X 1 501 501 SO4 SO4 . 
D 3 SO4 X 1 502 502 SO4 SO4 . 
E 4 HOH X 1 601 505 HOH HOH . 
E 4 HOH X 2 602 506 HOH HOH . 
E 4 HOH X 3 603 511 HOH HOH . 
E 4 HOH X 4 604 512 HOH HOH . 
E 4 HOH X 5 605 513 HOH HOH . 
E 4 HOH X 6 606 514 HOH HOH . 
E 4 HOH X 7 607 515 HOH HOH . 
E 4 HOH X 8 608 516 HOH HOH . 
E 4 HOH X 9 609 518 HOH HOH . 
E 4 HOH X 10 610 519 HOH HOH . 
E 4 HOH X 11 611 520 HOH HOH . 
E 4 HOH X 12 612 521 HOH HOH . 
E 4 HOH X 13 613 522 HOH HOH . 
E 4 HOH X 14 614 526 HOH HOH . 
E 4 HOH X 15 615 527 HOH HOH . 
E 4 HOH X 16 616 528 HOH HOH . 
E 4 HOH X 17 617 529 HOH HOH . 
E 4 HOH X 18 618 530 HOH HOH . 
E 4 HOH X 19 619 532 HOH HOH . 
E 4 HOH X 20 620 534 HOH HOH . 
E 4 HOH X 21 621 535 HOH HOH . 
E 4 HOH X 22 622 536 HOH HOH . 
E 4 HOH X 23 623 537 HOH HOH . 
E 4 HOH X 24 624 539 HOH HOH . 
E 4 HOH X 25 625 540 HOH HOH . 
E 4 HOH X 26 626 549 HOH HOH . 
E 4 HOH X 27 627 553 HOH HOH . 
E 4 HOH X 28 628 557 HOH HOH . 
E 4 HOH X 29 629 561 HOH HOH . 
E 4 HOH X 30 630 565 HOH HOH . 
E 4 HOH X 31 631 574 HOH HOH . 
E 4 HOH X 32 632 576 HOH HOH . 
E 4 HOH X 33 633 577 HOH HOH . 
E 4 HOH X 34 634 579 HOH HOH . 
E 4 HOH X 35 635 581 HOH HOH . 
E 4 HOH X 36 636 582 HOH HOH . 
E 4 HOH X 37 637 585 HOH HOH . 
E 4 HOH X 38 638 586 HOH HOH . 
E 4 HOH X 39 639 588 HOH HOH . 
E 4 HOH X 40 640 592 HOH HOH . 
E 4 HOH X 41 641 594 HOH HOH . 
E 4 HOH X 42 642 596 HOH HOH . 
E 4 HOH X 43 643 603 HOH HOH . 
E 4 HOH X 44 644 604 HOH HOH . 
E 4 HOH X 45 645 609 HOH HOH . 
E 4 HOH X 46 646 610 HOH HOH . 
E 4 HOH X 47 647 620 HOH HOH . 
E 4 HOH X 48 648 631 HOH HOH . 
E 4 HOH X 49 649 637 HOH HOH . 
E 4 HOH X 50 650 649 HOH HOH . 
E 4 HOH X 51 651 655 HOH HOH . 
E 4 HOH X 52 652 657 HOH HOH . 
E 4 HOH X 53 653 659 HOH HOH . 
E 4 HOH X 54 654 660 HOH HOH . 
E 4 HOH X 55 655 661 HOH HOH . 
E 4 HOH X 56 656 662 HOH HOH . 
E 4 HOH X 57 657 663 HOH HOH . 
E 4 HOH X 58 658 664 HOH HOH . 
E 4 HOH X 59 659 668 HOH HOH . 
E 4 HOH X 60 660 669 HOH HOH . 
E 4 HOH X 61 661 670 HOH HOH . 
E 4 HOH X 62 662 671 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 TIY . . . B 2 28.9 -55.358 12.89 0.25 48.61 ? C13 TIY 500 X 1 
HETATM 2 C C15 TIY . . . B 2 29.848 -56.359 12.775 0.25 49.21 ? C15 TIY 500 X 1 
HETATM 3 O O01 TIY . . . B 2 32.112 -57.076 12.873 0.25 50.36 ? O01 TIY 500 X 1 
HETATM 4 C C02 TIY . . . B 2 31.186 -56.087 12.99 0.25 49.59 ? C02 TIY 500 X 1 
HETATM 5 C C03 TIY . . . B 2 31.618 -54.826 13.333 0.25 49.93 ? C03 TIY 500 X 1 
HETATM 6 C C04 TIY . . . B 2 30.668 -53.832 13.445 0.25 48.31 ? C04 TIY 500 X 1 
HETATM 7 C C05 TIY . . . B 2 30.928 -52.432 13.783 0.25 48.82 ? C05 TIY 500 X 1 
HETATM 8 C C06 TIY . . . B 2 32.063 -51.795 14.019 0.25 49.18 ? C06 TIY 500 X 1 
HETATM 9 C C07 TIY . . . B 2 33.41 -52.344 14.044 0.25 50.46 ? C07 TIY 500 X 1 
HETATM 10 C C08 TIY . . . B 2 33.82 -53.605 13.827 0.25 51.1 ? C08 TIY 500 X 1 
HETATM 11 C C09 TIY . . . B 2 33.099 -54.686 13.528 0.25 50.64 ? C09 TIY 500 X 1 
HETATM 12 O O10 TIY . . . B 2 33.74 -55.713 13.376 0.25 52.03 ? O10 TIY 500 X 1 
HETATM 13 O O11 TIY . . . B 2 35.127 -53.834 13.917 0.25 52.78 ? O11 TIY 500 X 1 
HETATM 14 C C12 TIY . . . B 2 29.325 -54.09 13.227 0.25 48.24 ? C12 TIY 500 X 1 
HETATM 15 O O14 TIY . . . B 2 27.579 -55.604 12.682 0.25 46.86 ? O14 TIY 500 X 1 
HETATM 16 O O16 TIY . . . B 2 29.501 -57.638 12.446 0.25 49.95 ? O16 TIY 500 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#