data_4G3X # _model_server_result.job_id OAXp00eON2USPZZmVk2nJQ _model_server_result.datetime_utc '2024-11-02 12:16:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4G3X # _exptl.entry_id 4G3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G3X _cell.length_a 91.4 _cell.length_b 91.4 _cell.length_c 93.11 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc3 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc4 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 4G3X _atom_sites.fract_transf_matrix[1][1] 0.010941 _atom_sites.fract_transf_matrix[1][2] 0.006317 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GNP A 1 201 528 GNP GNP . D 4 MG A 1 202 300 MG MG . E 5 HOH A 1 301 200 HOH HOH . E 5 HOH A 2 302 201 HOH HOH . E 5 HOH A 3 303 202 HOH HOH . E 5 HOH A 4 304 203 HOH HOH . E 5 HOH A 5 305 204 HOH HOH . E 5 HOH A 6 306 205 HOH HOH . E 5 HOH A 7 307 208 HOH HOH . E 5 HOH A 8 308 209 HOH HOH . E 5 HOH A 9 309 210 HOH HOH . E 5 HOH A 10 310 211 HOH HOH . E 5 HOH A 11 311 212 HOH HOH . E 5 HOH A 12 312 213 HOH HOH . E 5 HOH A 13 313 214 HOH HOH . E 5 HOH A 14 314 216 HOH HOH . F 5 HOH B 1 201 206 HOH HOH . F 5 HOH B 2 202 207 HOH HOH . F 5 HOH B 3 203 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 39.076 -11.949 -21.789 1 70.83 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . C 3 39.347 -12.994 -22.843 1 70.87 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . C 3 38.587 -10.619 -22.305 1 71.28 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . C 3 40.329 -11.891 -20.955 1 70.43 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . C 3 37.933 -12.483 -20.833 1 59.68 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . C 3 37.534 -11.702 -19.519 1 73.31 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . C 3 38.647 -11.768 -18.55 1 73.02 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . C 3 37.077 -10.362 -19.957 1 74.1 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . C 3 36.347 -12.409 -18.879 1 72.09 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . C 3 34.944 -11.822 -18.933 1 70.88 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . C 3 34.914 -10.663 -18.018 1 70.93 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . C 3 34.553 -11.607 -20.338 1 70.12 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . C 3 33.937 -12.883 -18.344 1 88.68 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . C 3 34.139 -14.263 -18.584 1 88.84 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . C 3 33.218 -15.099 -17.716 1 88.72 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . C 3 33.456 -14.785 -16.319 1 88.78 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . C 3 31.73 -14.871 -17.962 1 88.46 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . C 3 31.07 -16.122 -18.101 1 88.35 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . C 3 31.27 -14.113 -16.718 1 88.47 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . C 3 29.933 -14.404 -16.364 1 88.63 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . C 3 32.216 -14.661 -15.659 1 88.45 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . C 3 32.372 -13.782 -14.503 1 88.1 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . C 3 32.973 -12.546 -14.473 1 88.13 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . C 3 32.963 -11.994 -13.292 1 88.15 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . C 3 32.317 -12.921 -12.485 1 87.94 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . C 3 32.013 -12.873 -11.105 1 87.81 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . C 3 32.264 -11.97 -10.296 1 88.16 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . C 3 31.349 -14.02 -10.68 1 87.26 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . C 3 31.022 -15.078 -11.491 1 87.07 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . C 3 30.38 -16.099 -10.905 1 86.97 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . C 3 31.301 -15.135 -12.787 1 87.28 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . C 3 31.946 -14.025 -13.216 1 87.73 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #