data_4G4B # _model_server_result.job_id rg_mNphsf_Ae0-ANdgtEyA _model_server_result.datetime_utc '2024-12-16 19:48:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4G4B # _exptl.entry_id 4G4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.045 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cisplatin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G4B _cell.length_a 78.822 _cell.length_b 78.822 _cell.length_c 38.019 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 A NH1 ARG 14 A ARG 14 1_555 B PT1 CPT . A CPT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 B PT1 CPT . A CPT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A ND1 HIS 15 A HIS 15 1_555 D PT1 CPT . A CPT 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'Cl2 H6 N2 Pt' _chem_comp.formula_weight 300.045 _chem_comp.id CPT _chem_comp.mon_nstd_flag . _chem_comp.name Cisplatin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms diammine(dichloro)platinum # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT1 N1 CPT sing 70 n n PT1 N2 CPT sing 71 n n N1 H11 CPT sing 72 n n N1 H12 CPT sing 73 n n N1 H13 CPT sing 74 n n N2 H21 CPT sing 75 n n N2 H22 CPT sing 76 n n N2 H23 CPT sing 77 n n CL2 PT1 CPT sing 78 n n CL1 PT1 CPT sing 79 n n # _atom_sites.entry_id 4G4B _atom_sites.fract_transf_matrix[1][1] 0.012687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPT A 1 201 1 CPT CPT . C 3 DMS A 1 202 1 DMS DMS . D 2 CPT A 1 203 1 CPT CPT . E 3 DMS A 1 204 1 DMS DMS . F 3 DMS A 1 205 1 DMS DMS . G 4 CL A 1 206 1 CL CL . H 4 CL A 1 207 1 CL CL . I 3 DMS A 1 208 1 DMS DMS . J 3 DMS A 1 209 1 DMS DMS . K 5 HOH A 1 301 2 HOH HOH . K 5 HOH A 2 302 3 HOH HOH . K 5 HOH A 3 303 4 HOH HOH . K 5 HOH A 4 304 5 HOH HOH . K 5 HOH A 5 305 6 HOH HOH . K 5 HOH A 6 306 7 HOH HOH . K 5 HOH A 7 307 8 HOH HOH . K 5 HOH A 8 308 9 HOH HOH . K 5 HOH A 9 309 10 HOH HOH . K 5 HOH A 10 310 11 HOH HOH . K 5 HOH A 11 311 12 HOH HOH . K 5 HOH A 12 312 13 HOH HOH . K 5 HOH A 13 313 14 HOH HOH . K 5 HOH A 14 314 15 HOH HOH . K 5 HOH A 15 315 16 HOH HOH . K 5 HOH A 16 316 17 HOH HOH . K 5 HOH A 17 317 18 HOH HOH . K 5 HOH A 18 318 19 HOH HOH . K 5 HOH A 19 319 20 HOH HOH . K 5 HOH A 20 320 21 HOH HOH . K 5 HOH A 21 321 22 HOH HOH . K 5 HOH A 22 322 23 HOH HOH . K 5 HOH A 23 323 24 HOH HOH . K 5 HOH A 24 324 25 HOH HOH . K 5 HOH A 25 325 26 HOH HOH . K 5 HOH A 26 326 27 HOH HOH . K 5 HOH A 27 327 28 HOH HOH . K 5 HOH A 28 328 29 HOH HOH . K 5 HOH A 29 329 30 HOH HOH . K 5 HOH A 30 330 31 HOH HOH . K 5 HOH A 31 331 32 HOH HOH . K 5 HOH A 32 332 33 HOH HOH . K 5 HOH A 33 333 34 HOH HOH . K 5 HOH A 34 334 35 HOH HOH . K 5 HOH A 35 335 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT1 CPT . . . D 2 -11.877 -11.393 -8.538 0.8 43.78 ? PT1 CPT 203 A 1 HETATM 2 N N2 CPT . . . D 2 -12.733 -9.601 -7.706 1 24.38 ? N2 CPT 203 A 1 HETATM 3 CL CL2 CPT . . . D 2 -11.919 -12.74 -6.493 1 59.26 ? CL2 CPT 203 A 1 HETATM 4 CL CL1 CPT . . . D 2 -10.915 -12.748 -10.356 1 58.23 ? CL1 CPT 203 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #