data_4G4M # _model_server_result.job_id 5UnHTZs6j7WcPovGLocmYg _model_server_result.datetime_utc '2024-10-10 02:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 4G4M # _exptl.entry_id 4G4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G4M _cell.length_a 49.581 _cell.length_b 49.581 _cell.length_c 41.569 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 5 A GLU 5 1_555 A N 6FL 6 A 6FL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C 6FL 6 A 6FL 6 1_555 A N TYR 7 A TYR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C GLU 9 A GLU 9 1_555 A N 6FL 10 A 6FL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale4 A C 6FL 10 A 6FL 10 1_555 A N GLU 11 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C ASP 12 A ASP 12 1_555 A N 6FL 13 A 6FL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale6 A C 6FL 13 A 6FL 13 1_555 A N GLN 14 A GLN 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale7 B C GLU 5 B GLU 5 1_555 B N 6FL 6 B 6FL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 B C 6FL 6 B 6FL 6 1_555 B N TYR 7 B TYR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale9 B C GLU 9 B GLU 9 1_555 B N 6FL 10 B 6FL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C 6FL 10 B 6FL 10 1_555 B N GLU 11 B GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 B C ASP 12 B ASP 12 1_555 B N 6FL 13 B 6FL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale12 B C 6FL 13 B 6FL 13 1_555 B N GLN 14 B GLN 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 4G4M _atom_sites.fract_transf_matrix[1][1] 0.020169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG4 A 1 101 1 PG4 PG4 . D 3 EDO A 1 102 1 EDO EDO . E 3 EDO A 1 103 1 EDO EDO . F 2 PG4 B 1 101 1 PG4 PG4 . G 3 EDO B 1 102 1 EDO EDO . H 4 HOH A 1 201 1 HOH HOH . H 4 HOH A 2 202 1 HOH HOH . H 4 HOH A 3 203 3 HOH HOH . H 4 HOH A 4 204 7 HOH HOH . H 4 HOH A 5 205 8 HOH HOH . H 4 HOH A 6 206 9 HOH HOH . H 4 HOH A 7 207 10 HOH HOH . H 4 HOH A 8 208 11 HOH HOH . H 4 HOH A 9 209 13 HOH HOH . H 4 HOH A 10 210 17 HOH HOH . H 4 HOH A 11 211 18 HOH HOH . H 4 HOH A 12 212 27 HOH HOH . I 4 HOH B 1 201 2 HOH HOH . I 4 HOH B 2 202 4 HOH HOH . I 4 HOH B 3 203 5 HOH HOH . I 4 HOH B 4 204 6 HOH HOH . I 4 HOH B 5 205 12 HOH HOH . I 4 HOH B 6 206 14 HOH HOH . I 4 HOH B 7 207 15 HOH HOH . I 4 HOH B 8 208 16 HOH HOH . I 4 HOH B 9 209 19 HOH HOH . I 4 HOH B 10 210 20 HOH HOH . I 4 HOH B 11 211 21 HOH HOH . I 4 HOH B 12 212 22 HOH HOH . I 4 HOH B 13 213 23 HOH HOH . I 4 HOH B 14 214 24 HOH HOH . I 4 HOH B 15 215 25 HOH HOH . I 4 HOH B 16 216 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 2.332 -0.129 0.193 1 34 ? C1 EDO 102 A 1 HETATM 2 O O1 EDO . . . D 3 1.926 0.514 -1.166 1 30.03 ? O1 EDO 102 A 1 HETATM 3 C C2 EDO . . . D 3 1.343 -0.931 1.234 1 36.66 ? C2 EDO 102 A 1 HETATM 4 O O2 EDO . . . D 3 1.127 -2.227 1.503 1 39.22 ? O2 EDO 102 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #