data_4G4V # _model_server_result.job_id 4ZrNz_WbrI6WVSUP0LUjKA _model_server_result.datetime_utc '2025-01-10 08:20:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4G4V # _exptl.entry_id 4G4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,6-DIAMINOPIMELIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G4V _cell.length_a 42.04 _cell.length_b 45.13 _cell.length_c 50.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H14 N2 O4' _chem_comp.formula_weight 190.197 _chem_comp.id API _chem_comp.mon_nstd_flag n _chem_comp.name '2,6-DIAMINOPIMELIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA API sing 13 n n C O API doub 14 n n C OXT API sing 15 n n CA C3 API sing 16 n n CA N API sing 17 n n CA HA API sing 18 n n C3 C4 API sing 19 n n C3 H31 API sing 20 n n C3 H32 API sing 21 n n C4 C5 API sing 22 n n C4 H41 API sing 23 n n C4 H42 API sing 24 n n C5 C6 API sing 25 n n C5 H51 API sing 26 n n C5 H52 API sing 27 n n C6 C7 API sing 28 n n C6 N6 API sing 29 n n C6 H6 API sing 30 n n C7 O3 API doub 31 n n C7 O4 API sing 32 n n OXT HXT API sing 33 n n O4 HO4 API sing 34 n n N H API sing 35 n n N H2 API sing 36 n n N6 HN61 API sing 37 n n N6 HN62 API sing 38 n n # _atom_sites.entry_id 4G4V _atom_sites.fract_transf_matrix[1][1] 0.023787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 API A 1 201 201 API API . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 5 HOH HOH . C 3 HOH A 5 305 6 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 9 HOH HOH . C 3 HOH A 8 308 10 HOH HOH . C 3 HOH A 9 309 12 HOH HOH . C 3 HOH A 10 310 13 HOH HOH . C 3 HOH A 11 311 15 HOH HOH . C 3 HOH A 12 312 16 HOH HOH . C 3 HOH A 13 313 17 HOH HOH . C 3 HOH A 14 314 21 HOH HOH . C 3 HOH A 15 315 23 HOH HOH . C 3 HOH A 16 316 24 HOH HOH . C 3 HOH A 17 317 26 HOH HOH . C 3 HOH A 18 318 27 HOH HOH . C 3 HOH A 19 319 28 HOH HOH . C 3 HOH A 20 320 31 HOH HOH . C 3 HOH A 21 321 32 HOH HOH . C 3 HOH A 22 322 41 HOH HOH . C 3 HOH A 23 323 42 HOH HOH . C 3 HOH A 24 324 44 HOH HOH . C 3 HOH A 25 325 47 HOH HOH . C 3 HOH A 26 326 48 HOH HOH . C 3 HOH A 27 327 49 HOH HOH . C 3 HOH A 28 328 51 HOH HOH . C 3 HOH A 29 329 52 HOH HOH . C 3 HOH A 30 330 53 HOH HOH . C 3 HOH A 31 331 54 HOH HOH . C 3 HOH A 32 332 55 HOH HOH . C 3 HOH A 33 333 57 HOH HOH . C 3 HOH A 34 334 58 HOH HOH . C 3 HOH A 35 335 59 HOH HOH . C 3 HOH A 36 336 60 HOH HOH . C 3 HOH A 37 337 61 HOH HOH . C 3 HOH A 38 338 62 HOH HOH . C 3 HOH A 39 339 63 HOH HOH . C 3 HOH A 40 340 64 HOH HOH . C 3 HOH A 41 341 65 HOH HOH . C 3 HOH A 42 342 66 HOH HOH . C 3 HOH A 43 343 67 HOH HOH . C 3 HOH A 44 344 68 HOH HOH . C 3 HOH A 45 345 69 HOH HOH . C 3 HOH A 46 346 70 HOH HOH . C 3 HOH A 47 347 71 HOH HOH . C 3 HOH A 48 348 72 HOH HOH . C 3 HOH A 49 349 73 HOH HOH . C 3 HOH A 50 350 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C API . . . B 2 -11.028 7.183 -0.593 1 39.85 ? C API 201 A 1 HETATM 2 C CA API . . . B 2 -12.058 6.289 0.128 1 39.42 ? CA API 201 A 1 HETATM 3 C C3 API . . . B 2 -11.69 4.786 -0.007 1 35.03 ? C3 API 201 A 1 HETATM 4 C C4 API . . . B 2 -10.439 4.356 0.74 1 33.81 ? C4 API 201 A 1 HETATM 5 C C5 API . . . B 2 -10.282 2.828 0.8 1 29.19 ? C5 API 201 A 1 HETATM 6 C C6 API . . . B 2 -8.968 2.446 1.514 1 28.55 ? C6 API 201 A 1 HETATM 7 C C7 API . . . B 2 -9.113 0.967 1.952 1 26.8 ? C7 API 201 A 1 HETATM 8 O O API . . . B 2 -11.337 7.972 -1.466 1 39.66 ? O API 201 A 1 HETATM 9 O OXT API . . . B 2 -9.808 7.01 -0.161 1 41.41 ? OXT API 201 A 1 HETATM 10 O O3 API . . . B 2 -9.727 0.142 1.307 1 27.29 ? O3 API 201 A 1 HETATM 11 O O4 API . . . B 2 -8.503 0.714 3.096 1 27.52 ? O4 API 201 A 1 HETATM 12 N N API . . . B 2 -13.323 6.624 -0.55 1 38.11 ? N API 201 A 1 HETATM 13 N N6 API . . . B 2 -8.717 3.176 2.773 1 27.57 ? N6 API 201 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #