data_4G51 # _model_server_result.job_id Nzqxjj5PsESphuqtvJeY3Q _model_server_result.datetime_utc '2024-11-15 01:39:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 4G51 # _exptl.entry_id 4G51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.16 _cell.angle_gamma 90 _cell.entry_id 4G51 _cell.length_a 62.002 _cell.length_b 94.672 _cell.length_c 61.956 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? covale ? covale2 C C ACE 1 C ACE 0 1_555 C N SER 2 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 F FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 E N NO . A NO 201 1_555 F FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 H FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 G N NO . B NO 201 1_555 H FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc5 C NE2 HIS 89 C HIS 88 1_555 J FE HEM . C HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc6 I N NO . C NO 201 1_555 J FE HEM . C HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc7 D NE2 HIS 92 D HIS 92 1_555 L FE HEM . D HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 K N NO . D NO 201 1_555 L FE HEM . D HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 135 n n CHA C4D HEM doub 136 n n CHA HHA HEM sing 137 n n CHB C4A HEM sing 138 n n CHB C1B HEM doub 139 n n CHB HHB HEM sing 140 n n CHC C4B HEM sing 141 n n CHC C1C HEM doub 142 n n CHC HHC HEM sing 143 n n CHD C4C HEM doub 144 n n CHD C1D HEM sing 145 n n CHD HHD HEM sing 146 n n C1A C2A HEM doub 147 n y C1A NA HEM sing 148 n y C2A C3A HEM sing 149 n y C2A CAA HEM sing 150 n n C3A C4A HEM doub 151 n y C3A CMA HEM sing 152 n n C4A NA HEM sing 153 n y CMA HMA HEM sing 154 n n CMA HMAA HEM sing 155 n n CMA HMAB HEM sing 156 n n CAA CBA HEM sing 157 n n CAA HAA HEM sing 158 n n CAA HAAA HEM sing 159 n n CBA CGA HEM sing 160 n n CBA HBA HEM sing 161 n n CBA HBAA HEM sing 162 n n CGA O1A HEM doub 163 n n CGA O2A HEM sing 164 n n C1B C2B HEM sing 165 n n C1B NB HEM sing 166 n n C2B C3B HEM doub 167 n n C2B CMB HEM sing 168 n n C3B C4B HEM sing 169 n n C3B CAB HEM sing 170 n n C4B NB HEM doub 171 n n CMB HMB HEM sing 172 n n CMB HMBA HEM sing 173 n n CMB HMBB HEM sing 174 n n CAB CBB HEM doub 175 n n CAB HAB HEM sing 176 n n CBB HBB HEM sing 177 n n CBB HBBA HEM sing 178 n n C1C C2C HEM sing 179 n y C1C NC HEM sing 180 n y C2C C3C HEM doub 181 n y C2C CMC HEM sing 182 n n C3C C4C HEM sing 183 n y C3C CAC HEM sing 184 n n C4C NC HEM sing 185 n y CMC HMC HEM sing 186 n n CMC HMCA HEM sing 187 n n CMC HMCB HEM sing 188 n n CAC CBC HEM doub 189 n n CAC HAC HEM sing 190 n n CBC HBC HEM sing 191 n n CBC HBCA HEM sing 192 n n C1D C2D HEM sing 193 n n C1D ND HEM doub 194 n n C2D C3D HEM doub 195 n n C2D CMD HEM sing 196 n n C3D C4D HEM sing 197 n n C3D CAD HEM sing 198 n n C4D ND HEM sing 199 n n CMD HMD HEM sing 200 n n CMD HMDA HEM sing 201 n n CMD HMDB HEM sing 202 n n CAD CBD HEM sing 203 n n CAD HAD HEM sing 204 n n CAD HADA HEM sing 205 n n CBD CGD HEM sing 206 n n CBD HBD HEM sing 207 n n CBD HBDA HEM sing 208 n n CGD O1D HEM doub 209 n n CGD O2D HEM sing 210 n n O2A H2A HEM sing 211 n n O2D H2D HEM sing 212 n n FE NA HEM sing 213 n n FE NB HEM sing 214 n n FE NC HEM sing 215 n n FE ND HEM sing 216 n n # _atom_sites.entry_id 4G51 _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000236 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NO A 1 201 199 NO NO . F 4 HEM A 1 202 200 HEM HEM . G 3 NO B 1 201 199 NO NO . H 4 HEM B 1 202 400 HEM HEM . I 3 NO C 1 201 199 NO NO . J 4 HEM C 1 202 600 HEM HEM . K 3 NO D 1 201 199 NO NO . L 4 HEM D 1 202 800 HEM HEM . M 5 HOH A 1 1001 1001 HOH HOH . M 5 HOH A 2 1002 1008 HOH HOH . M 5 HOH A 3 1003 1011 HOH HOH . M 5 HOH A 4 1004 1012 HOH HOH . M 5 HOH A 5 1005 1013 HOH HOH . M 5 HOH A 6 1006 1020 HOH HOH . M 5 HOH A 7 1007 1022 HOH HOH . M 5 HOH A 8 1008 1025 HOH HOH . M 5 HOH A 9 1009 1029 HOH HOH . M 5 HOH A 10 1010 1036 HOH HOH . M 5 HOH A 11 1011 1044 HOH HOH . M 5 HOH A 12 1012 1046 HOH HOH . M 5 HOH A 13 1013 1049 HOH HOH . M 5 HOH A 14 1014 1054 HOH HOH . M 5 HOH A 15 1015 1060 HOH HOH . N 5 HOH B 1 301 1002 HOH HOH . N 5 HOH B 2 302 1005 HOH HOH . N 5 HOH B 3 303 1006 HOH HOH . N 5 HOH B 4 304 1007 HOH HOH . N 5 HOH B 5 305 1015 HOH HOH . N 5 HOH B 6 306 1019 HOH HOH . N 5 HOH B 7 307 1023 HOH HOH . N 5 HOH B 8 308 1032 HOH HOH . N 5 HOH B 9 309 1037 HOH HOH . N 5 HOH B 10 310 1043 HOH HOH . N 5 HOH B 11 311 1045 HOH HOH . N 5 HOH B 12 312 1055 HOH HOH . N 5 HOH B 13 313 1057 HOH HOH . N 5 HOH B 14 314 1059 HOH HOH . N 5 HOH B 15 315 1061 HOH HOH . O 5 HOH C 1 301 1003 HOH HOH . O 5 HOH C 2 302 1004 HOH HOH . O 5 HOH C 3 303 1010 HOH HOH . O 5 HOH C 4 304 1016 HOH HOH . O 5 HOH C 5 305 1017 HOH HOH . O 5 HOH C 6 306 1024 HOH HOH . O 5 HOH C 7 307 1026 HOH HOH . O 5 HOH C 8 308 1027 HOH HOH . O 5 HOH C 9 309 1028 HOH HOH . O 5 HOH C 10 310 1033 HOH HOH . O 5 HOH C 11 311 1034 HOH HOH . O 5 HOH C 12 312 1039 HOH HOH . O 5 HOH C 13 313 1040 HOH HOH . O 5 HOH C 14 314 1042 HOH HOH . O 5 HOH C 15 315 1048 HOH HOH . O 5 HOH C 16 316 1050 HOH HOH . O 5 HOH C 17 317 1052 HOH HOH . O 5 HOH C 18 318 1056 HOH HOH . O 5 HOH C 19 319 1058 HOH HOH . O 5 HOH C 20 320 1064 HOH HOH . P 5 HOH D 1 301 1009 HOH HOH . P 5 HOH D 2 302 1014 HOH HOH . P 5 HOH D 3 303 1018 HOH HOH . P 5 HOH D 4 304 1021 HOH HOH . P 5 HOH D 5 305 1030 HOH HOH . P 5 HOH D 6 306 1031 HOH HOH . P 5 HOH D 7 307 1035 HOH HOH . P 5 HOH D 8 308 1041 HOH HOH . P 5 HOH D 9 309 1047 HOH HOH . P 5 HOH D 10 310 1051 HOH HOH . P 5 HOH D 11 311 1053 HOH HOH . P 5 HOH D 12 312 1062 HOH HOH . P 5 HOH D 13 313 1063 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 4 -5.441 19.701 24.746 1 40.52 ? CHA HEM 202 B 1 HETATM 2 C CHB HEM . . . H 4 -5.275 15.544 27.203 1 40.17 ? CHB HEM 202 B 1 HETATM 3 C CHC HEM . . . H 4 -5.133 13.135 23.024 1 38.99 ? CHC HEM 202 B 1 HETATM 4 C CHD HEM . . . H 4 -4.176 17.298 20.756 1 34.45 ? CHD HEM 202 B 1 HETATM 5 C C1A HEM . . . H 4 -5.538 18.772 25.76 1 40.77 ? C1A HEM 202 B 1 HETATM 6 C C2A HEM . . . H 4 -6.012 19.042 27.103 1 42.96 ? C2A HEM 202 B 1 HETATM 7 C C3A HEM . . . H 4 -5.971 17.893 27.783 1 43.4 ? C3A HEM 202 B 1 HETATM 8 C C4A HEM . . . H 4 -5.455 16.876 26.891 1 41.16 ? C4A HEM 202 B 1 HETATM 9 C CMA HEM . . . H 4 -6.358 17.617 29.252 1 37.59 ? CMA HEM 202 B 1 HETATM 10 C CAA HEM . . . H 4 -6.459 20.439 27.577 1 38.93 ? CAA HEM 202 B 1 HETATM 11 C CBA HEM . . . H 4 -7.692 21.057 26.931 1 42.05 ? CBA HEM 202 B 1 HETATM 12 C CGA HEM . . . H 4 -8.445 22.055 27.774 1 48.81 ? CGA HEM 202 B 1 HETATM 13 O O1A HEM . . . H 4 -8.77 21.687 28.934 1 55.57 ? O1A HEM 202 B 1 HETATM 14 O O2A HEM . . . H 4 -8.689 23.177 27.253 1 48.67 ? O2A HEM 202 B 1 HETATM 15 C C1B HEM . . . H 4 -5.275 14.513 26.283 1 37.87 ? C1B HEM 202 B 1 HETATM 16 C C2B HEM . . . H 4 -5.364 13.101 26.593 1 39.94 ? C2B HEM 202 B 1 HETATM 17 C C3B HEM . . . H 4 -5.326 12.43 25.438 1 38.78 ? C3B HEM 202 B 1 HETATM 18 C C4B HEM . . . H 4 -5.212 13.403 24.378 1 37.59 ? C4B HEM 202 B 1 HETATM 19 C CMB HEM . . . H 4 -5.488 12.556 28.031 1 55.08 ? CMB HEM 202 B 1 HETATM 20 C CAB HEM . . . H 4 -5.38 10.907 25.196 1 45.02 ? CAB HEM 202 B 1 HETATM 21 C CBB HEM . . . H 4 -4.716 10.072 26.003 1 57.07 ? CBB HEM 202 B 1 HETATM 22 C C1C HEM . . . H 4 -4.682 14.056 22.094 1 45.7 ? C1C HEM 202 B 1 HETATM 23 C C2C HEM . . . H 4 -3.931 13.733 20.898 1 49.06 ? C2C HEM 202 B 1 HETATM 24 C C3C HEM . . . H 4 -3.676 14.878 20.264 1 47.12 ? C3C HEM 202 B 1 HETATM 25 C C4C HEM . . . H 4 -4.243 15.955 21.055 1 40.41 ? C4C HEM 202 B 1 HETATM 26 C CMC HEM . . . H 4 -3.549 12.282 20.528 1 50 ? CMC HEM 202 B 1 HETATM 27 C CAC HEM . . . H 4 -2.897 15.118 18.953 1 47.3 ? CAC HEM 202 B 1 HETATM 28 C CBC HEM . . . H 4 -2.977 14.242 17.948 1 41.62 ? CBC HEM 202 B 1 HETATM 29 C C1D HEM . . . H 4 -4.431 18.334 21.631 1 36.28 ? C1D HEM 202 B 1 HETATM 30 C C2D HEM . . . H 4 -4.263 19.745 21.367 1 41.07 ? C2D HEM 202 B 1 HETATM 31 C C3D HEM . . . H 4 -4.585 20.41 22.487 1 43.9 ? C3D HEM 202 B 1 HETATM 32 C C4D HEM . . . H 4 -5.033 19.434 23.453 1 39.77 ? C4D HEM 202 B 1 HETATM 33 C CMD HEM . . . H 4 -3.77 20.321 20.025 1 45.22 ? CMD HEM 202 B 1 HETATM 34 C CAD HEM . . . H 4 -4.623 21.933 22.723 1 51.9 ? CAD HEM 202 B 1 HETATM 35 C CBD HEM . . . H 4 -3.916 22.512 23.937 1 56.07 ? CBD HEM 202 B 1 HETATM 36 C CGD HEM . . . H 4 -4.734 23.406 24.831 1 58.1 ? CGD HEM 202 B 1 HETATM 37 O O1D HEM . . . H 4 -4.444 23.419 26.056 1 46.79 ? O1D HEM 202 B 1 HETATM 38 O O2D HEM . . . H 4 -5.648 24.078 24.285 1 66.04 ? O2D HEM 202 B 1 HETATM 39 N NA HEM . . . H 4 -5.206 17.432 25.648 1 38.17 ? NA HEM 202 B 1 HETATM 40 N NB HEM . . . H 4 -5.179 14.682 24.913 1 33.72 ? NB HEM 202 B 1 HETATM 41 N NC HEM . . . H 4 -4.864 15.422 22.178 1 45.24 ? NC HEM 202 B 1 HETATM 42 N ND HEM . . . H 4 -4.892 18.161 22.925 1 37.29 ? ND HEM 202 B 1 HETATM 43 FE FE HEM . . . H 4 -5.156 16.417 23.909 1 41.29 ? FE HEM 202 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 1140 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 43 #