data_4G59
#
_model_server_result.job_id            KJlMLmFb-9Lx--JL9Z1uKg 
_model_server_result.datetime_utc      '2024-11-05 00:52:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    4G59 
#
_exptl.entry_id    4G59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.72 
_cell.angle_gamma         90 
_cell.entry_id            4G59 
_cell.length_a            193.443 
_cell.length_b            99.8 
_cell.length_c            68.609 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 7 1_555 A SG CYS 29 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 63 A CYS 60 1_555 A SG CYS 163 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 18 C CYS 16 1_555 B SG CYS 172 C CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 101 C CYS 99 1_555 B SG CYS 108 C CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 C SG CYS 10 B CYS 7 1_555 C SG CYS 29 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 C SG CYS 63 B CYS 60 1_555 C SG CYS 163 B CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 D SG CYS 18 D CYS 16 1_555 D SG CYS 172 D CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf8 D SG CYS 101 D CYS 99 1_555 D SG CYS 108 D CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 B ND2 ASN 63 C ASN 61 1_555 E C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale2 B ND2 ASN 210 C ASN 208 1_555 F C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale3 D ND2 ASN 63 D ASN 61 1_555 H C1 NAG . D NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale4 D ND2 ASN 210 D ASN 208 1_555 G C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4G59 
_atom_sites.fract_transf_matrix[1][1]    0.005169 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000979 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG C 1 401 401 NAG NAG . 
F 3 NAG C 1 402 402 NAG NAG . 
G 3 NAG D 1 401 401 NAG NAG . 
H 3 NAG D 1 402 402 NAG NAG . 
I 4 HOH A 1 301 1 HOH HOH . 
I 4 HOH A 2 302 13 HOH HOH . 
I 4 HOH A 3 303 17 HOH HOH . 
I 4 HOH A 4 304 31 HOH HOH . 
I 4 HOH A 5 305 32 HOH HOH . 
I 4 HOH A 6 306 39 HOH HOH . 
I 4 HOH A 7 307 42 HOH HOH . 
I 4 HOH A 8 308 50 HOH HOH . 
I 4 HOH A 9 309 61 HOH HOH . 
I 4 HOH A 10 310 63 HOH HOH . 
I 4 HOH A 11 311 69 HOH HOH . 
I 4 HOH A 12 312 73 HOH HOH . 
I 4 HOH A 13 313 79 HOH HOH . 
J 4 HOH C 1 501 2 HOH HOH . 
J 4 HOH C 2 502 4 HOH HOH . 
J 4 HOH C 3 503 6 HOH HOH . 
J 4 HOH C 4 504 8 HOH HOH . 
J 4 HOH C 5 505 12 HOH HOH . 
J 4 HOH C 6 506 16 HOH HOH . 
J 4 HOH C 7 507 19 HOH HOH . 
J 4 HOH C 8 508 22 HOH HOH . 
J 4 HOH C 9 509 23 HOH HOH . 
J 4 HOH C 10 510 25 HOH HOH . 
J 4 HOH C 11 511 29 HOH HOH . 
J 4 HOH C 12 512 30 HOH HOH . 
J 4 HOH C 13 513 36 HOH HOH . 
J 4 HOH C 14 514 43 HOH HOH . 
J 4 HOH C 15 515 45 HOH HOH . 
J 4 HOH C 16 516 47 HOH HOH . 
J 4 HOH C 17 517 48 HOH HOH . 
J 4 HOH C 18 518 52 HOH HOH . 
J 4 HOH C 19 519 59 HOH HOH . 
J 4 HOH C 20 520 60 HOH HOH . 
J 4 HOH C 21 521 62 HOH HOH . 
J 4 HOH C 22 522 65 HOH HOH . 
J 4 HOH C 23 523 66 HOH HOH . 
J 4 HOH C 24 524 70 HOH HOH . 
J 4 HOH C 25 525 74 HOH HOH . 
J 4 HOH C 26 526 76 HOH HOH . 
K 4 HOH B 1 301 15 HOH HOH . 
K 4 HOH B 2 302 24 HOH HOH . 
K 4 HOH B 3 303 34 HOH HOH . 
K 4 HOH B 4 304 44 HOH HOH . 
K 4 HOH B 5 305 46 HOH HOH . 
K 4 HOH B 6 306 54 HOH HOH . 
K 4 HOH B 7 307 68 HOH HOH . 
K 4 HOH B 8 308 78 HOH HOH . 
L 4 HOH D 1 501 3 HOH HOH . 
L 4 HOH D 2 502 5 HOH HOH . 
L 4 HOH D 3 503 7 HOH HOH . 
L 4 HOH D 4 504 9 HOH HOH . 
L 4 HOH D 5 505 11 HOH HOH . 
L 4 HOH D 6 506 14 HOH HOH . 
L 4 HOH D 7 507 18 HOH HOH . 
L 4 HOH D 8 508 20 HOH HOH . 
L 4 HOH D 9 509 21 HOH HOH . 
L 4 HOH D 10 510 26 HOH HOH . 
L 4 HOH D 11 511 27 HOH HOH . 
L 4 HOH D 12 512 33 HOH HOH . 
L 4 HOH D 13 513 35 HOH HOH . 
L 4 HOH D 14 514 37 HOH HOH . 
L 4 HOH D 15 515 38 HOH HOH . 
L 4 HOH D 16 516 40 HOH HOH . 
L 4 HOH D 17 517 41 HOH HOH . 
L 4 HOH D 18 518 49 HOH HOH . 
L 4 HOH D 19 519 55 HOH HOH . 
L 4 HOH D 20 520 56 HOH HOH . 
L 4 HOH D 21 521 57 HOH HOH . 
L 4 HOH D 22 522 58 HOH HOH . 
L 4 HOH D 23 523 64 HOH HOH . 
L 4 HOH D 24 524 67 HOH HOH . 
L 4 HOH D 25 525 71 HOH HOH . 
L 4 HOH D 26 526 72 HOH HOH . 
L 4 HOH D 27 527 75 HOH HOH . 
L 4 HOH D 28 528 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 3 -32.931 -44.861 -0.86 1 80.95 ? C1 NAG 402 C 1 
HETATM 2 C C2 NAG . . . F 3 -31.944 -45.815 -0.198 1 78.97 ? C2 NAG 402 C 1 
HETATM 3 C C3 NAG . . . F 3 -30.785 -46.068 -1.149 1 81.67 ? C3 NAG 402 C 1 
HETATM 4 C C4 NAG . . . F 3 -31.361 -46.622 -2.439 1 80.23 ? C4 NAG 402 C 1 
HETATM 5 C C5 NAG . . . F 3 -32.341 -45.599 -2.998 1 81.3 ? C5 NAG 402 C 1 
HETATM 6 C C6 NAG . . . F 3 -32.91 -46.056 -4.335 1 80.74 ? C6 NAG 402 C 1 
HETATM 7 C C7 NAG . . . F 3 -31.726 -45.831 2.217 1 79.86 ? C7 NAG 402 C 1 
HETATM 8 C C8 NAG . . . F 3 -31.17 -45.157 3.437 1 71.35 ? C8 NAG 402 C 1 
HETATM 9 N N2 NAG . . . F 3 -31.46 -45.255 1.048 1 74.92 ? N2 NAG 402 C 1 
HETATM 10 O O3 NAG . . . F 3 -29.895 -47.001 -0.582 1 78.1 ? O3 NAG 402 C 1 
HETATM 11 O O4 NAG . . . F 3 -30.326 -46.849 -3.367 1 77.79 ? O4 NAG 402 C 1 
HETATM 12 O O5 NAG . . . F 3 -33.389 -45.437 -2.068 1 87.5 ? O5 NAG 402 C 1 
HETATM 13 O O6 NAG . . . F 3 -33.84 -45.104 -4.8 1 91.72 ? O6 NAG 402 C 1 
HETATM 14 O O7 NAG . . . F 3 -32.391 -46.861 2.321 1 71.87 ? O7 NAG 402 C 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#