data_4G5A # _model_server_result.job_id 8ayjpZ1D9P4z8ZimWV3PyA _model_server_result.datetime_utc '2024-11-13 01:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4G5A # _exptl.entry_id 4G5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G5A _cell.length_a 87.042 _cell.length_b 93.255 _cell.length_c 27.654 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 85 A TYR 107 1_555 A N MSE 86 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 86 A MSE 108 1_555 A N TYR 87 A TYR 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C TYR 85 B TYR 107 1_555 B N MSE 86 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C MSE 86 B MSE 108 1_555 B N TYR 87 B TYR 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4G5A _atom_sites.fract_transf_matrix[1][1] 0.011489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.036161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 201 122 GOL GOL . D 2 GOL B 1 202 123 GOL GOL . E 3 HOH A 1 201 126 HOH HOH . E 3 HOH A 2 202 129 HOH HOH . E 3 HOH A 3 203 132 HOH HOH . E 3 HOH A 4 204 133 HOH HOH . E 3 HOH A 5 205 134 HOH HOH . E 3 HOH A 6 206 135 HOH HOH . E 3 HOH A 7 207 137 HOH HOH . E 3 HOH A 8 208 138 HOH HOH . E 3 HOH A 9 209 139 HOH HOH . E 3 HOH A 10 210 140 HOH HOH . E 3 HOH A 11 211 145 HOH HOH . E 3 HOH A 12 212 146 HOH HOH . E 3 HOH A 13 213 148 HOH HOH . E 3 HOH A 14 214 151 HOH HOH . E 3 HOH A 15 215 152 HOH HOH . E 3 HOH A 16 216 154 HOH HOH . E 3 HOH A 17 217 155 HOH HOH . E 3 HOH A 18 218 161 HOH HOH . E 3 HOH A 19 219 163 HOH HOH . E 3 HOH A 20 220 165 HOH HOH . E 3 HOH A 21 221 167 HOH HOH . E 3 HOH A 22 222 169 HOH HOH . E 3 HOH A 23 223 170 HOH HOH . E 3 HOH A 24 224 171 HOH HOH . E 3 HOH A 25 225 173 HOH HOH . E 3 HOH A 26 226 174 HOH HOH . E 3 HOH A 27 227 178 HOH HOH . E 3 HOH A 28 228 179 HOH HOH . E 3 HOH A 29 229 180 HOH HOH . E 3 HOH A 30 230 181 HOH HOH . E 3 HOH A 31 231 183 HOH HOH . E 3 HOH A 32 232 184 HOH HOH . E 3 HOH A 33 233 186 HOH HOH . E 3 HOH A 34 234 187 HOH HOH . E 3 HOH A 35 235 191 HOH HOH . E 3 HOH A 36 236 193 HOH HOH . E 3 HOH A 37 237 195 HOH HOH . E 3 HOH A 38 238 201 HOH HOH . E 3 HOH A 39 239 202 HOH HOH . E 3 HOH A 40 240 203 HOH HOH . E 3 HOH A 41 241 206 HOH HOH . E 3 HOH A 42 242 207 HOH HOH . E 3 HOH A 43 243 209 HOH HOH . E 3 HOH A 44 244 210 HOH HOH . E 3 HOH A 45 245 213 HOH HOH . E 3 HOH A 46 246 214 HOH HOH . E 3 HOH A 47 247 215 HOH HOH . E 3 HOH A 48 248 216 HOH HOH . E 3 HOH A 49 249 217 HOH HOH . E 3 HOH A 50 250 220 HOH HOH . E 3 HOH A 51 251 223 HOH HOH . E 3 HOH A 52 252 224 HOH HOH . E 3 HOH A 53 253 225 HOH HOH . E 3 HOH A 54 254 228 HOH HOH . E 3 HOH A 55 255 233 HOH HOH . E 3 HOH A 56 256 237 HOH HOH . E 3 HOH A 57 257 238 HOH HOH . E 3 HOH A 58 258 239 HOH HOH . E 3 HOH A 59 259 241 HOH HOH . E 3 HOH A 60 260 245 HOH HOH . E 3 HOH A 61 261 246 HOH HOH . E 3 HOH A 62 262 251 HOH HOH . E 3 HOH A 63 263 253 HOH HOH . E 3 HOH A 64 264 254 HOH HOH . E 3 HOH A 65 265 256 HOH HOH . E 3 HOH A 66 266 257 HOH HOH . E 3 HOH A 67 267 258 HOH HOH . E 3 HOH A 68 268 259 HOH HOH . E 3 HOH A 69 269 266 HOH HOH . E 3 HOH A 70 270 268 HOH HOH . E 3 HOH A 71 271 270 HOH HOH . E 3 HOH A 72 272 271 HOH HOH . E 3 HOH A 73 273 272 HOH HOH . E 3 HOH A 74 274 274 HOH HOH . E 3 HOH A 75 275 275 HOH HOH . E 3 HOH A 76 276 278 HOH HOH . E 3 HOH A 77 277 279 HOH HOH . E 3 HOH A 78 278 284 HOH HOH . E 3 HOH A 79 279 286 HOH HOH . E 3 HOH A 80 280 287 HOH HOH . E 3 HOH A 81 281 290 HOH HOH . E 3 HOH A 82 282 292 HOH HOH . E 3 HOH A 83 283 293 HOH HOH . E 3 HOH A 84 284 295 HOH HOH . E 3 HOH A 85 285 298 HOH HOH . E 3 HOH A 86 286 299 HOH HOH . E 3 HOH A 87 287 300 HOH HOH . E 3 HOH A 88 288 301 HOH HOH . E 3 HOH A 89 289 302 HOH HOH . E 3 HOH A 90 290 303 HOH HOH . E 3 HOH A 91 291 304 HOH HOH . E 3 HOH A 92 292 308 HOH HOH . E 3 HOH A 93 293 310 HOH HOH . E 3 HOH A 94 294 317 HOH HOH . E 3 HOH A 95 295 318 HOH HOH . E 3 HOH A 96 296 319 HOH HOH . E 3 HOH A 97 297 320 HOH HOH . E 3 HOH A 98 298 321 HOH HOH . F 3 HOH B 1 301 124 HOH HOH . F 3 HOH B 2 302 125 HOH HOH . F 3 HOH B 3 303 127 HOH HOH . F 3 HOH B 4 304 128 HOH HOH . F 3 HOH B 5 305 130 HOH HOH . F 3 HOH B 6 306 131 HOH HOH . F 3 HOH B 7 307 136 HOH HOH . F 3 HOH B 8 308 141 HOH HOH . F 3 HOH B 9 309 142 HOH HOH . F 3 HOH B 10 310 143 HOH HOH . F 3 HOH B 11 311 144 HOH HOH . F 3 HOH B 12 312 147 HOH HOH . F 3 HOH B 13 313 149 HOH HOH . F 3 HOH B 14 314 150 HOH HOH . F 3 HOH B 15 315 153 HOH HOH . F 3 HOH B 16 316 156 HOH HOH . F 3 HOH B 17 317 157 HOH HOH . F 3 HOH B 18 318 158 HOH HOH . F 3 HOH B 19 319 159 HOH HOH . F 3 HOH B 20 320 160 HOH HOH . F 3 HOH B 21 321 162 HOH HOH . F 3 HOH B 22 322 164 HOH HOH . F 3 HOH B 23 323 166 HOH HOH . F 3 HOH B 24 324 168 HOH HOH . F 3 HOH B 25 325 172 HOH HOH . F 3 HOH B 26 326 175 HOH HOH . F 3 HOH B 27 327 176 HOH HOH . F 3 HOH B 28 328 177 HOH HOH . F 3 HOH B 29 329 182 HOH HOH . F 3 HOH B 30 330 185 HOH HOH . F 3 HOH B 31 331 188 HOH HOH . F 3 HOH B 32 332 189 HOH HOH . F 3 HOH B 33 333 190 HOH HOH . F 3 HOH B 34 334 192 HOH HOH . F 3 HOH B 35 335 194 HOH HOH . F 3 HOH B 36 336 196 HOH HOH . F 3 HOH B 37 337 197 HOH HOH . F 3 HOH B 38 338 198 HOH HOH . F 3 HOH B 39 339 199 HOH HOH . F 3 HOH B 40 340 200 HOH HOH . F 3 HOH B 41 341 204 HOH HOH . F 3 HOH B 42 342 205 HOH HOH . F 3 HOH B 43 343 208 HOH HOH . F 3 HOH B 44 344 211 HOH HOH . F 3 HOH B 45 345 212 HOH HOH . F 3 HOH B 46 346 218 HOH HOH . F 3 HOH B 47 347 219 HOH HOH . F 3 HOH B 48 348 221 HOH HOH . F 3 HOH B 49 349 222 HOH HOH . F 3 HOH B 50 350 226 HOH HOH . F 3 HOH B 51 351 227 HOH HOH . F 3 HOH B 52 352 229 HOH HOH . F 3 HOH B 53 353 230 HOH HOH . F 3 HOH B 54 354 231 HOH HOH . F 3 HOH B 55 355 232 HOH HOH . F 3 HOH B 56 356 234 HOH HOH . F 3 HOH B 57 357 235 HOH HOH . F 3 HOH B 58 358 236 HOH HOH . F 3 HOH B 59 359 240 HOH HOH . F 3 HOH B 60 360 242 HOH HOH . F 3 HOH B 61 361 243 HOH HOH . F 3 HOH B 62 362 244 HOH HOH . F 3 HOH B 63 363 247 HOH HOH . F 3 HOH B 64 364 248 HOH HOH . F 3 HOH B 65 365 249 HOH HOH . F 3 HOH B 66 366 250 HOH HOH . F 3 HOH B 67 367 252 HOH HOH . F 3 HOH B 68 368 255 HOH HOH . F 3 HOH B 69 369 260 HOH HOH . F 3 HOH B 70 370 261 HOH HOH . F 3 HOH B 71 371 262 HOH HOH . F 3 HOH B 72 372 263 HOH HOH . F 3 HOH B 73 373 264 HOH HOH . F 3 HOH B 74 374 265 HOH HOH . F 3 HOH B 75 375 267 HOH HOH . F 3 HOH B 76 376 269 HOH HOH . F 3 HOH B 77 377 273 HOH HOH . F 3 HOH B 78 378 276 HOH HOH . F 3 HOH B 79 379 277 HOH HOH . F 3 HOH B 80 380 280 HOH HOH . F 3 HOH B 81 381 281 HOH HOH . F 3 HOH B 82 382 282 HOH HOH . F 3 HOH B 83 383 283 HOH HOH . F 3 HOH B 84 384 285 HOH HOH . F 3 HOH B 85 385 288 HOH HOH . F 3 HOH B 86 386 289 HOH HOH . F 3 HOH B 87 387 291 HOH HOH . F 3 HOH B 88 388 294 HOH HOH . F 3 HOH B 89 389 296 HOH HOH . F 3 HOH B 90 390 297 HOH HOH . F 3 HOH B 91 391 305 HOH HOH . F 3 HOH B 92 392 306 HOH HOH . F 3 HOH B 93 393 307 HOH HOH . F 3 HOH B 94 394 309 HOH HOH . F 3 HOH B 95 395 311 HOH HOH . F 3 HOH B 96 396 312 HOH HOH . F 3 HOH B 97 397 313 HOH HOH . F 3 HOH B 98 398 314 HOH HOH . F 3 HOH B 99 399 315 HOH HOH . F 3 HOH B 100 400 316 HOH HOH . F 3 HOH B 101 401 322 HOH HOH . F 3 HOH B 102 402 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 73.441 15.853 7.687 1 59.23 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . C 2 72.261 16.058 8.437 1 67.2 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . C 2 73.227 14.79 6.619 1 57.54 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . C 2 73.373 13.495 7.175 1 48.32 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . C 2 71.847 14.94 5.994 1 56.61 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . C 2 71.871 14.327 4.725 1 57.58 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #