data_4G5F
#
_model_server_result.job_id            oHfSRJ1LQ1-Mnw7BsZOp6g 
_model_server_result.datetime_utc      '2024-11-22 11:46:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4g5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4G5F 
#
_exptl.entry_id    4G5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.157 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydro-1,4-benzodioxine-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.58 
_cell.angle_gamma         90 
_cell.entry_id            4G5F 
_cell.length_a            48.41 
_cell.length_b            70.99 
_cell.length_c            81.68 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4G5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
B,I,J,K,L,M,O 2 1 
A,C,D,E,F,G,H,N 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -13.593558 0 80.540906 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 L N N 
#
_chem_comp.formula           'C9 H8 O4' 
_chem_comp.formula_weight    180.157 
_chem_comp.id                0JD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydro-1,4-benzodioxine-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAB CAJ 0JD doub 1 n n 
CAJ OAA 0JD sing 2 n n 
CAJ CAM 0JD sing 3 n n 
CAG CAM 0JD sing 4 n n 
CAG OAH 0JD sing 5 n n 
CAM OAI 0JD sing 6 n n 
OAH CAK 0JD sing 7 n n 
OAI CAL 0JD sing 8 n n 
CAK CAL 0JD doub 9 n y 
CAK CAE 0JD sing 10 n y 
CAL CAF 0JD sing 11 n y 
CAE CAC 0JD doub 12 n y 
CAF CAD 0JD doub 13 n y 
CAC CAD 0JD sing 14 n y 
OAA H1 0JD sing 15 n n 
CAM H2 0JD sing 16 n n 
CAF H3 0JD sing 17 n n 
CAD H4 0JD sing 18 n n 
CAC H5 0JD sing 19 n n 
CAE H6 0JD sing 20 n n 
CAG H7 0JD sing 21 n n 
CAG H8 0JD sing 22 n n 
#
_atom_sites.entry_id                     4G5F 
_atom_sites.fract_transf_matrix[1][1]    0.020657 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003486 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012416 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 707 GOL GOL . 
D 3 0JD A 1 402 1 0JD XXX . 
E 4 15N A 1 403 1 15N XXX . 
F 5 EDO A 1 404 1 EDO EDO . 
G 5 EDO A 1 405 1 EDO EDO . 
H 6 EOH A 1 406 1 EOH EOH . 
I 6 EOH B 1 401 710 EOH EOH . 
J 4 15N B 1 402 1 15N XXX . 
K 6 EOH B 1 404 1 EOH EOH . 
L 3 0JD B 1 403 1 0JD XXX . 
M 5 EDO B 1 405 1 EDO EDO . 
N 7 HOH A 1 501 711 HOH HOH . 
N 7 HOH A 2 502 712 HOH HOH . 
N 7 HOH A 3 503 713 HOH HOH . 
N 7 HOH A 4 504 714 HOH HOH . 
N 7 HOH A 5 505 715 HOH HOH . 
N 7 HOH A 6 506 716 HOH HOH . 
N 7 HOH A 7 507 717 HOH HOH . 
N 7 HOH A 8 508 718 HOH HOH . 
N 7 HOH A 9 509 719 HOH HOH . 
N 7 HOH A 10 510 721 HOH HOH . 
N 7 HOH A 11 511 722 HOH HOH . 
N 7 HOH A 12 512 723 HOH HOH . 
N 7 HOH A 13 513 724 HOH HOH . 
N 7 HOH A 14 514 725 HOH HOH . 
N 7 HOH A 15 515 726 HOH HOH . 
N 7 HOH A 16 516 727 HOH HOH . 
N 7 HOH A 17 517 728 HOH HOH . 
N 7 HOH A 18 518 730 HOH HOH . 
N 7 HOH A 19 519 732 HOH HOH . 
N 7 HOH A 20 520 733 HOH HOH . 
N 7 HOH A 21 521 735 HOH HOH . 
N 7 HOH A 22 522 736 HOH HOH . 
N 7 HOH A 23 523 737 HOH HOH . 
N 7 HOH A 24 524 738 HOH HOH . 
N 7 HOH A 25 525 739 HOH HOH . 
N 7 HOH A 26 526 740 HOH HOH . 
N 7 HOH A 27 527 741 HOH HOH . 
N 7 HOH A 28 528 742 HOH HOH . 
N 7 HOH A 29 529 743 HOH HOH . 
N 7 HOH A 30 530 744 HOH HOH . 
N 7 HOH A 31 531 745 HOH HOH . 
N 7 HOH A 32 532 746 HOH HOH . 
N 7 HOH A 33 533 748 HOH HOH . 
N 7 HOH A 34 534 749 HOH HOH . 
N 7 HOH A 35 535 750 HOH HOH . 
N 7 HOH A 36 536 752 HOH HOH . 
N 7 HOH A 37 537 753 HOH HOH . 
N 7 HOH A 38 538 754 HOH HOH . 
N 7 HOH A 39 539 755 HOH HOH . 
N 7 HOH A 40 540 756 HOH HOH . 
N 7 HOH A 41 541 757 HOH HOH . 
N 7 HOH A 42 542 759 HOH HOH . 
N 7 HOH A 43 543 760 HOH HOH . 
N 7 HOH A 44 544 761 HOH HOH . 
N 7 HOH A 45 545 762 HOH HOH . 
N 7 HOH A 46 546 764 HOH HOH . 
N 7 HOH A 47 547 766 HOH HOH . 
N 7 HOH A 48 548 767 HOH HOH . 
N 7 HOH A 49 549 768 HOH HOH . 
N 7 HOH A 50 550 769 HOH HOH . 
N 7 HOH A 51 551 771 HOH HOH . 
N 7 HOH A 52 552 772 HOH HOH . 
N 7 HOH A 53 553 773 HOH HOH . 
N 7 HOH A 54 554 774 HOH HOH . 
N 7 HOH A 55 555 776 HOH HOH . 
N 7 HOH A 56 556 777 HOH HOH . 
N 7 HOH A 57 557 778 HOH HOH . 
N 7 HOH A 58 558 779 HOH HOH . 
N 7 HOH A 59 559 780 HOH HOH . 
N 7 HOH A 60 560 781 HOH HOH . 
N 7 HOH A 61 561 782 HOH HOH . 
N 7 HOH A 62 562 788 HOH HOH . 
N 7 HOH A 63 563 807 HOH HOH . 
N 7 HOH A 64 564 868 HOH HOH . 
N 7 HOH A 65 565 882 HOH HOH . 
N 7 HOH A 66 566 884 HOH HOH . 
N 7 HOH A 67 567 885 HOH HOH . 
N 7 HOH A 68 568 886 HOH HOH . 
N 7 HOH A 69 569 887 HOH HOH . 
N 7 HOH A 70 570 888 HOH HOH . 
N 7 HOH A 71 571 889 HOH HOH . 
N 7 HOH A 72 572 891 HOH HOH . 
N 7 HOH A 73 573 892 HOH HOH . 
N 7 HOH A 74 574 893 HOH HOH . 
N 7 HOH A 75 575 894 HOH HOH . 
N 7 HOH A 76 576 895 HOH HOH . 
N 7 HOH A 77 577 897 HOH HOH . 
N 7 HOH A 78 578 898 HOH HOH . 
N 7 HOH A 79 579 899 HOH HOH . 
N 7 HOH A 80 580 900 HOH HOH . 
N 7 HOH A 81 581 901 HOH HOH . 
N 7 HOH A 82 582 902 HOH HOH . 
N 7 HOH A 83 583 903 HOH HOH . 
N 7 HOH A 84 584 905 HOH HOH . 
N 7 HOH A 85 585 906 HOH HOH . 
N 7 HOH A 86 586 907 HOH HOH . 
N 7 HOH A 87 587 909 HOH HOH . 
N 7 HOH A 88 588 910 HOH HOH . 
N 7 HOH A 89 589 911 HOH HOH . 
N 7 HOH A 90 590 913 HOH HOH . 
N 7 HOH A 91 591 914 HOH HOH . 
N 7 HOH A 92 592 916 HOH HOH . 
N 7 HOH A 93 593 917 HOH HOH . 
N 7 HOH A 94 594 918 HOH HOH . 
N 7 HOH A 95 595 919 HOH HOH . 
N 7 HOH A 96 596 923 HOH HOH . 
N 7 HOH A 97 597 925 HOH HOH . 
N 7 HOH A 98 598 926 HOH HOH . 
N 7 HOH A 99 599 927 HOH HOH . 
N 7 HOH A 100 600 933 HOH HOH . 
N 7 HOH A 101 601 935 HOH HOH . 
N 7 HOH A 102 602 942 HOH HOH . 
N 7 HOH A 103 603 943 HOH HOH . 
N 7 HOH A 104 604 944 HOH HOH . 
N 7 HOH A 105 605 946 HOH HOH . 
N 7 HOH A 106 606 950 HOH HOH . 
O 7 HOH B 1 501 720 HOH HOH . 
O 7 HOH B 2 502 731 HOH HOH . 
O 7 HOH B 3 503 751 HOH HOH . 
O 7 HOH B 4 504 758 HOH HOH . 
O 7 HOH B 5 505 783 HOH HOH . 
O 7 HOH B 6 506 784 HOH HOH . 
O 7 HOH B 7 507 785 HOH HOH . 
O 7 HOH B 8 508 786 HOH HOH . 
O 7 HOH B 9 509 787 HOH HOH . 
O 7 HOH B 10 510 789 HOH HOH . 
O 7 HOH B 11 511 790 HOH HOH . 
O 7 HOH B 12 512 791 HOH HOH . 
O 7 HOH B 13 513 792 HOH HOH . 
O 7 HOH B 14 514 793 HOH HOH . 
O 7 HOH B 15 515 794 HOH HOH . 
O 7 HOH B 16 516 795 HOH HOH . 
O 7 HOH B 17 517 796 HOH HOH . 
O 7 HOH B 18 518 797 HOH HOH . 
O 7 HOH B 19 519 798 HOH HOH . 
O 7 HOH B 20 520 799 HOH HOH . 
O 7 HOH B 21 521 800 HOH HOH . 
O 7 HOH B 22 522 801 HOH HOH . 
O 7 HOH B 23 523 802 HOH HOH . 
O 7 HOH B 24 524 803 HOH HOH . 
O 7 HOH B 25 525 804 HOH HOH . 
O 7 HOH B 26 526 805 HOH HOH . 
O 7 HOH B 27 527 806 HOH HOH . 
O 7 HOH B 28 528 808 HOH HOH . 
O 7 HOH B 29 529 809 HOH HOH . 
O 7 HOH B 30 530 810 HOH HOH . 
O 7 HOH B 31 531 811 HOH HOH . 
O 7 HOH B 32 532 812 HOH HOH . 
O 7 HOH B 33 533 813 HOH HOH . 
O 7 HOH B 34 534 814 HOH HOH . 
O 7 HOH B 35 535 815 HOH HOH . 
O 7 HOH B 36 536 816 HOH HOH . 
O 7 HOH B 37 537 817 HOH HOH . 
O 7 HOH B 38 538 818 HOH HOH . 
O 7 HOH B 39 539 819 HOH HOH . 
O 7 HOH B 40 540 820 HOH HOH . 
O 7 HOH B 41 541 821 HOH HOH . 
O 7 HOH B 42 542 822 HOH HOH . 
O 7 HOH B 43 543 823 HOH HOH . 
O 7 HOH B 44 544 824 HOH HOH . 
O 7 HOH B 45 545 825 HOH HOH . 
O 7 HOH B 46 546 826 HOH HOH . 
O 7 HOH B 47 547 828 HOH HOH . 
O 7 HOH B 48 548 829 HOH HOH . 
O 7 HOH B 49 549 830 HOH HOH . 
O 7 HOH B 50 550 831 HOH HOH . 
O 7 HOH B 51 551 832 HOH HOH . 
O 7 HOH B 52 552 833 HOH HOH . 
O 7 HOH B 53 553 834 HOH HOH . 
O 7 HOH B 54 554 835 HOH HOH . 
O 7 HOH B 55 555 836 HOH HOH . 
O 7 HOH B 56 556 837 HOH HOH . 
O 7 HOH B 57 557 838 HOH HOH . 
O 7 HOH B 58 558 839 HOH HOH . 
O 7 HOH B 59 559 840 HOH HOH . 
O 7 HOH B 60 560 841 HOH HOH . 
O 7 HOH B 61 561 842 HOH HOH . 
O 7 HOH B 62 562 843 HOH HOH . 
O 7 HOH B 63 563 844 HOH HOH . 
O 7 HOH B 64 564 845 HOH HOH . 
O 7 HOH B 65 565 846 HOH HOH . 
O 7 HOH B 66 566 847 HOH HOH . 
O 7 HOH B 67 567 848 HOH HOH . 
O 7 HOH B 68 568 849 HOH HOH . 
O 7 HOH B 69 569 850 HOH HOH . 
O 7 HOH B 70 570 852 HOH HOH . 
O 7 HOH B 71 571 853 HOH HOH . 
O 7 HOH B 72 572 854 HOH HOH . 
O 7 HOH B 73 573 855 HOH HOH . 
O 7 HOH B 74 574 856 HOH HOH . 
O 7 HOH B 75 575 857 HOH HOH . 
O 7 HOH B 76 576 858 HOH HOH . 
O 7 HOH B 77 577 859 HOH HOH . 
O 7 HOH B 78 578 860 HOH HOH . 
O 7 HOH B 79 579 861 HOH HOH . 
O 7 HOH B 80 580 862 HOH HOH . 
O 7 HOH B 81 581 863 HOH HOH . 
O 7 HOH B 82 582 864 HOH HOH . 
O 7 HOH B 83 583 865 HOH HOH . 
O 7 HOH B 84 584 866 HOH HOH . 
O 7 HOH B 85 585 867 HOH HOH . 
O 7 HOH B 86 586 869 HOH HOH . 
O 7 HOH B 87 587 870 HOH HOH . 
O 7 HOH B 88 588 871 HOH HOH . 
O 7 HOH B 89 589 872 HOH HOH . 
O 7 HOH B 90 590 873 HOH HOH . 
O 7 HOH B 91 591 875 HOH HOH . 
O 7 HOH B 92 592 877 HOH HOH . 
O 7 HOH B 93 593 879 HOH HOH . 
O 7 HOH B 94 594 881 HOH HOH . 
O 7 HOH B 95 595 883 HOH HOH . 
O 7 HOH B 96 596 922 HOH HOH . 
O 7 HOH B 97 597 924 HOH HOH . 
O 7 HOH B 98 598 928 HOH HOH . 
O 7 HOH B 99 599 929 HOH HOH . 
O 7 HOH B 100 600 930 HOH HOH . 
O 7 HOH B 101 601 931 HOH HOH . 
O 7 HOH B 102 602 932 HOH HOH . 
O 7 HOH B 103 603 936 HOH HOH . 
O 7 HOH B 104 604 938 HOH HOH . 
O 7 HOH B 105 605 940 HOH HOH . 
O 7 HOH B 106 606 941 HOH HOH . 
O 7 HOH B 107 607 945 HOH HOH . 
O 7 HOH B 108 608 947 HOH HOH . 
O 7 HOH B 109 609 948 HOH HOH . 
O 7 HOH B 110 610 949 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA 0JD . A . D 3 15.351 12.938 3.735 0.5 48.29 ? OAA 0JD 402 A 1 
HETATM 2 C CAJ 0JD . A . D 3 15.398 11.806 3.478 0.5 49.17 ? CAJ 0JD 402 A 1 
HETATM 3 O OAB 0JD . A . D 3 15.669 11.367 2.365 0.5 48.95 ? OAB 0JD 402 A 1 
HETATM 4 C CAM 0JD . A . D 3 15.171 10.663 4.45 0.5 49.32 ? CAM 0JD 402 A 1 
HETATM 5 O OAI 0JD . A . D 3 14.54 11.201 5.588 0.5 50.44 ? OAI 0JD 402 A 1 
HETATM 6 C CAL 0JD . A . D 3 14.09 10.245 6.441 0.5 50.84 ? CAL 0JD 402 A 1 
HETATM 7 C CAF 0JD . A . D 3 13.678 10.639 7.674 0.5 51.51 ? CAF 0JD 402 A 1 
HETATM 8 C CAD 0JD . A . D 3 13.358 9.691 8.61 0.5 51.66 ? CAD 0JD 402 A 1 
HETATM 9 C CAC 0JD . A . D 3 13.44 8.371 8.306 0.5 52.53 ? CAC 0JD 402 A 1 
HETATM 10 C CAE 0JD . A . D 3 13.838 7.963 7.057 0.5 51.53 ? CAE 0JD 402 A 1 
HETATM 11 C CAK 0JD . A . D 3 14.155 8.9 6.124 0.5 51.63 ? CAK 0JD 402 A 1 
HETATM 12 O OAH 0JD . A . D 3 14.367 8.467 4.849 0.5 50.9 ? OAH 0JD 402 A 1 
HETATM 13 C CAG 0JD . A . D 3 14.436 9.492 3.883 0.5 49.37 ? CAG 0JD 402 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           374 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#