data_4G5H # _model_server_result.job_id v2GDmUWXVmSWsId0kzwhmA _model_server_result.datetime_utc '2024-12-22 06:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 4G5H # _exptl.entry_id 4G5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G5H _cell.length_a 124.03 _cell.length_b 124.03 _cell.length_c 103.161 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.015 107.413131 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -124.03 0 0 4 'crystal symmetry operation' 10_555 -y,-x,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 51.5805 5 'crystal symmetry operation' 11_455 -x+y-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -124.03 0 51.5805 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -62.015 107.413131 51.5805 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 170 A SER 149 1_555 S NA NA . A NA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 A O ILE 173 A ILE 152 1_555 S NA NA . A NA 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc3 S NA NA . A NA 418 1_555 T O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 S NA NA . A NA 418 1_555 T O HOH . A HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 S NA NA . A NA 418 1_555 T O HOH . A HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 4G5H _atom_sites.fract_transf_matrix[1][1] 0.008063 _atom_sites.fract_transf_matrix[1][2] 0.004655 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 500 NAP NAP . C 3 UD7 A 1 402 600 UD7 UD6 . D 3 UD7 A 1 403 601 UD7 UD6 . E 4 FMT A 1 404 1400 FMT FMT . F 4 FMT A 1 405 1401 FMT FMT . G 4 FMT A 1 406 1402 FMT FMT . H 4 FMT A 1 407 1403 FMT FMT . I 4 FMT A 1 408 1404 FMT FMT . J 4 FMT A 1 409 1406 FMT FMT . K 4 FMT A 1 410 1407 FMT FMT . L 4 FMT A 1 411 1408 FMT FMT . M 4 FMT A 1 412 1409 FMT FMT . N 4 FMT A 1 413 1410 FMT FMT . O 4 FMT A 1 414 1411 FMT FMT . P 4 FMT A 1 415 1412 FMT FMT . Q 4 FMT A 1 416 1413 FMT FMT . R 4 FMT A 1 417 1414 FMT FMT . S 5 NA A 1 418 1500 NA NA . T 6 HOH A 1 501 1000 HOH HOH . T 6 HOH A 2 502 1001 HOH HOH . T 6 HOH A 3 503 1002 HOH HOH . T 6 HOH A 4 504 1003 HOH HOH . T 6 HOH A 5 505 1004 HOH HOH . T 6 HOH A 6 506 1005 HOH HOH . T 6 HOH A 7 507 1007 HOH HOH . T 6 HOH A 8 508 1008 HOH HOH . T 6 HOH A 9 509 1009 HOH HOH . T 6 HOH A 10 510 1010 HOH HOH . T 6 HOH A 11 511 1011 HOH HOH . T 6 HOH A 12 512 1012 HOH HOH . T 6 HOH A 13 513 1015 HOH HOH . T 6 HOH A 14 514 1016 HOH HOH . T 6 HOH A 15 515 1017 HOH HOH . T 6 HOH A 16 516 1018 HOH HOH . T 6 HOH A 17 517 1020 HOH HOH . T 6 HOH A 18 518 1021 HOH HOH . T 6 HOH A 19 519 1022 HOH HOH . T 6 HOH A 20 520 1023 HOH HOH . T 6 HOH A 21 521 1025 HOH HOH . T 6 HOH A 22 522 1026 HOH HOH . T 6 HOH A 23 523 1027 HOH HOH . T 6 HOH A 24 524 1028 HOH HOH . T 6 HOH A 25 525 1030 HOH HOH . T 6 HOH A 26 526 1031 HOH HOH . T 6 HOH A 27 527 1032 HOH HOH . T 6 HOH A 28 528 1033 HOH HOH . T 6 HOH A 29 529 1034 HOH HOH . T 6 HOH A 30 530 1035 HOH HOH . T 6 HOH A 31 531 1036 HOH HOH . T 6 HOH A 32 532 1038 HOH HOH . T 6 HOH A 33 533 1039 HOH HOH . T 6 HOH A 34 534 1040 HOH HOH . T 6 HOH A 35 535 1041 HOH HOH . T 6 HOH A 36 536 1042 HOH HOH . T 6 HOH A 37 537 1043 HOH HOH . T 6 HOH A 38 538 1044 HOH HOH . T 6 HOH A 39 539 1045 HOH HOH . T 6 HOH A 40 540 1046 HOH HOH . T 6 HOH A 41 541 1047 HOH HOH . T 6 HOH A 42 542 1049 HOH HOH . T 6 HOH A 43 543 1050 HOH HOH . T 6 HOH A 44 544 1051 HOH HOH . T 6 HOH A 45 545 1052 HOH HOH . T 6 HOH A 46 546 1055 HOH HOH . T 6 HOH A 47 547 1056 HOH HOH . T 6 HOH A 48 548 1057 HOH HOH . T 6 HOH A 49 549 1058 HOH HOH . T 6 HOH A 50 550 1059 HOH HOH . T 6 HOH A 51 551 1060 HOH HOH . T 6 HOH A 52 552 1061 HOH HOH . T 6 HOH A 53 553 1062 HOH HOH . T 6 HOH A 54 554 1063 HOH HOH . T 6 HOH A 55 555 1064 HOH HOH . T 6 HOH A 56 556 1065 HOH HOH . T 6 HOH A 57 557 1066 HOH HOH . T 6 HOH A 58 558 1067 HOH HOH . T 6 HOH A 59 559 1068 HOH HOH . T 6 HOH A 60 560 1069 HOH HOH . T 6 HOH A 61 561 1070 HOH HOH . T 6 HOH A 62 562 1071 HOH HOH . T 6 HOH A 63 563 1072 HOH HOH . T 6 HOH A 64 564 1073 HOH HOH . T 6 HOH A 65 565 1074 HOH HOH . T 6 HOH A 66 566 1075 HOH HOH . T 6 HOH A 67 567 1076 HOH HOH . T 6 HOH A 68 568 1077 HOH HOH . T 6 HOH A 69 569 1078 HOH HOH . T 6 HOH A 70 570 1079 HOH HOH . T 6 HOH A 71 571 1080 HOH HOH . T 6 HOH A 72 572 1081 HOH HOH . T 6 HOH A 73 573 1082 HOH HOH . T 6 HOH A 74 574 1084 HOH HOH . T 6 HOH A 75 575 1085 HOH HOH . T 6 HOH A 76 576 1086 HOH HOH . T 6 HOH A 77 577 1087 HOH HOH . T 6 HOH A 78 578 1088 HOH HOH . T 6 HOH A 79 579 1090 HOH HOH . T 6 HOH A 80 580 1091 HOH HOH . T 6 HOH A 81 581 1092 HOH HOH . T 6 HOH A 82 582 1093 HOH HOH . T 6 HOH A 83 583 1094 HOH HOH . T 6 HOH A 84 584 1096 HOH HOH . T 6 HOH A 85 585 1097 HOH HOH . T 6 HOH A 86 586 1102 HOH HOH . T 6 HOH A 87 587 1103 HOH HOH . T 6 HOH A 88 588 1104 HOH HOH . T 6 HOH A 89 589 1105 HOH HOH . T 6 HOH A 90 590 1107 HOH HOH . T 6 HOH A 91 591 1108 HOH HOH . T 6 HOH A 92 592 1109 HOH HOH . T 6 HOH A 93 593 1110 HOH HOH . T 6 HOH A 94 594 1111 HOH HOH . T 6 HOH A 95 595 1113 HOH HOH . T 6 HOH A 96 596 1115 HOH HOH . T 6 HOH A 97 597 1116 HOH HOH . T 6 HOH A 98 598 1117 HOH HOH . T 6 HOH A 99 599 1118 HOH HOH . T 6 HOH A 100 600 1119 HOH HOH . T 6 HOH A 101 601 1120 HOH HOH . T 6 HOH A 102 602 1122 HOH HOH . T 6 HOH A 103 603 1123 HOH HOH . T 6 HOH A 104 604 1124 HOH HOH . T 6 HOH A 105 605 1125 HOH HOH . T 6 HOH A 106 606 1126 HOH HOH . T 6 HOH A 107 607 1127 HOH HOH . T 6 HOH A 108 608 1128 HOH HOH . T 6 HOH A 109 609 1129 HOH HOH . T 6 HOH A 110 610 1132 HOH HOH . T 6 HOH A 111 611 1133 HOH HOH . T 6 HOH A 112 612 1134 HOH HOH . T 6 HOH A 113 613 1135 HOH HOH . T 6 HOH A 114 614 1136 HOH HOH . T 6 HOH A 115 615 1137 HOH HOH . T 6 HOH A 116 616 1138 HOH HOH . T 6 HOH A 117 617 1139 HOH HOH . T 6 HOH A 118 618 1140 HOH HOH . T 6 HOH A 119 619 1142 HOH HOH . T 6 HOH A 120 620 1143 HOH HOH . T 6 HOH A 121 621 1144 HOH HOH . T 6 HOH A 122 622 1146 HOH HOH . T 6 HOH A 123 623 1147 HOH HOH . T 6 HOH A 124 624 1148 HOH HOH . T 6 HOH A 125 625 1151 HOH HOH . T 6 HOH A 126 626 1153 HOH HOH . T 6 HOH A 127 627 1154 HOH HOH . T 6 HOH A 128 628 1155 HOH HOH . T 6 HOH A 129 629 1156 HOH HOH . T 6 HOH A 130 630 1157 HOH HOH . T 6 HOH A 131 631 1158 HOH HOH . T 6 HOH A 132 632 1160 HOH HOH . T 6 HOH A 133 633 1161 HOH HOH . T 6 HOH A 134 634 1162 HOH HOH . T 6 HOH A 135 635 1163 HOH HOH . T 6 HOH A 136 636 1164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . H 4 -80.311 10.768 9.381 1 52 ? C FMT 407 A 1 HETATM 2 O O1 FMT . . . H 4 -79.851 10.098 8.438 1 56.29 ? O1 FMT 407 A 1 HETATM 3 O O2 FMT . . . H 4 -81.624 10.927 9.69 1 65.01 ? O2 FMT 407 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #