data_4G5J # _model_server_result.job_id xe0XCsdfYlUzcyFCY_nUJw _model_server_result.datetime_utc '2024-11-23 12:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 4G5J # _exptl.entry_id 4G5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-N-{4-[(3-chloro-4-fluorophenyl)amino]-7-[(3S)-tetrahydrofuran-3-yloxy]quinazolin-6-yl}-4-(dimethylamino)but-2-enamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G5J _cell.length_a 144.468 _cell.length_b 144.468 _cell.length_c 144.468 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 144.468 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 105 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id 0WN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 0WN _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.841 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H25 Cl F N5 O3' _chem_comp.formula_weight 485.938 _chem_comp.id 0WM _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-N-{4-[(3-chloro-4-fluorophenyl)amino]-7-[(3S)-tetrahydrofuran-3-yloxy]quinazolin-6-yl}-4-(dimethylamino)but-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Afatinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 0WM doub 1 n y C1 N3 0WM sing 2 n y C1 H1 0WM sing 3 n n N2 C4 0WM sing 4 n y N3 C5 0WM doub 5 n y C4 N11 0WM sing 6 n n C4 C6 0WM doub 7 n y C5 C6 0WM sing 8 n y C5 C10 0WM sing 9 n y C6 C8 0WM sing 10 n y C8 C7 0WM doub 11 n y C7 C9 0WM sing 12 n y C7 N26 0WM sing 13 n n C8 H8 0WM sing 14 n n C10 C9 0WM doub 15 n y C9 O20 0WM sing 16 n n C10 H10 0WM sing 17 n n N11 C16 0WM sing 18 n n N11 HN11 0WM sing 19 n n C13 C12 0WM doub 20 n y C14 C12 0WM sing 21 n y C12 CL1 0WM sing 22 n n C15 C13 0WM sing 23 n y C13 F18 0WM sing 24 n n C16 C14 0WM doub 25 n y C14 H14 0WM sing 26 n n C17 C15 0WM doub 27 n y C15 H15 0WM sing 28 n n C17 C16 0WM sing 29 n y C17 H17 0WM sing 30 n n O20 C21 0WM sing 31 n n C21 C22 0WM sing 32 n n C21 C25 0WM sing 33 n n C21 H21 0WM sing 34 n n C22 O23 0WM sing 35 n n C22 H22 0WM sing 36 n n C22 H22A 0WM sing 37 n n O23 C24 0WM sing 38 n n C25 C24 0WM sing 39 n n C24 H24 0WM sing 40 n n C24 H24A 0WM sing 41 n n C25 H25 0WM sing 42 n n C25 H25A 0WM sing 43 n n N26 C27 0WM sing 44 n n N26 HN26 0WM sing 45 n n O29 C27 0WM doub 46 n n C27 C28 0WM sing 47 n n C28 C30 0WM doub 48 e n C28 H28 0WM sing 49 n n C30 C31 0WM sing 50 n n C30 H30 0WM sing 51 n n N32 C31 0WM sing 52 n n C31 H31 0WM sing 53 n n C31 H31A 0WM sing 54 n n C33 N32 0WM sing 55 n n C34 N32 0WM sing 56 n n C33 H33 0WM sing 57 n n C33 H33A 0WM sing 58 n n C33 H33B 0WM sing 59 n n C34 H34 0WM sing 60 n n C34 H34A 0WM sing 61 n n C34 H34B 0WM sing 62 n n # _atom_sites.entry_id 4G5J _atom_sites.fract_transf_matrix[1][1] 0.006922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0WN A 1 1101 1 0WN 0WM . C 3 0WM A 1 1102 1 0WM 0WM . D 3 0WM A 1 1103 2 0WM 0WM . E 4 HOH A 1 1201 1 HOH HOH . E 4 HOH A 2 1202 2 HOH HOH . E 4 HOH A 3 1203 3 HOH HOH . E 4 HOH A 4 1204 4 HOH HOH . E 4 HOH A 5 1205 5 HOH HOH . E 4 HOH A 6 1206 6 HOH HOH . E 4 HOH A 7 1207 7 HOH HOH . E 4 HOH A 8 1208 8 HOH HOH . E 4 HOH A 9 1209 9 HOH HOH . E 4 HOH A 10 1210 10 HOH HOH . E 4 HOH A 11 1211 11 HOH HOH . E 4 HOH A 12 1212 12 HOH HOH . E 4 HOH A 13 1213 13 HOH HOH . E 4 HOH A 14 1214 14 HOH HOH . E 4 HOH A 15 1215 15 HOH HOH . E 4 HOH A 16 1216 16 HOH HOH . E 4 HOH A 17 1217 17 HOH HOH . E 4 HOH A 18 1218 18 HOH HOH . E 4 HOH A 19 1219 19 HOH HOH . E 4 HOH A 20 1220 20 HOH HOH . E 4 HOH A 21 1221 21 HOH HOH . E 4 HOH A 22 1222 22 HOH HOH . E 4 HOH A 23 1223 23 HOH HOH . E 4 HOH A 24 1224 24 HOH HOH . E 4 HOH A 25 1225 25 HOH HOH . E 4 HOH A 26 1226 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0WM . . . D 3 56.887 2.459 1.378 1 209.36 ? C1 0WM 1103 A 1 HETATM 2 N N2 0WM . . . D 3 57.963 1.602 1.382 1 202.28 ? N2 0WM 1103 A 1 HETATM 3 N N3 0WM . . . D 3 57.115 3.813 1.496 1 208.24 ? N3 0WM 1103 A 1 HETATM 4 C C4 0WM . . . D 3 59.264 2.068 1.514 1 192.9 ? C4 0WM 1103 A 1 HETATM 5 C C5 0WM . . . D 3 58.4 4.299 1.624 1 200.62 ? C5 0WM 1103 A 1 HETATM 6 C C6 0WM . . . D 3 59.507 3.442 1.629 1 192.54 ? C6 0WM 1103 A 1 HETATM 7 C C7 0WM . . . D 3 60.953 5.394 1.862 1 187.39 ? C7 0WM 1103 A 1 HETATM 8 C C8 0WM . . . D 3 60.789 4.006 1.754 1 184.16 ? C8 0WM 1103 A 1 HETATM 9 C C9 0WM . . . D 3 59.836 6.23 1.867 1 197.28 ? C9 0WM 1103 A 1 HETATM 10 C C10 0WM . . . D 3 58.558 5.67 1.743 1 202.71 ? C10 0WM 1103 A 1 HETATM 11 N N11 0WM . . . D 3 60.306 1.112 1.571 1 187.16 ? N11 0WM 1103 A 1 HETATM 12 C C12 0WM . . . D 3 58.883 -2.359 2.013 1 201.87 ? C12 0WM 1103 A 1 HETATM 13 C C13 0WM . . . D 3 60.038 -3.107 1.841 1 193.43 ? C13 0WM 1103 A 1 HETATM 14 C C14 0WM . . . D 3 58.922 -0.972 1.951 1 198.1 ? C14 0WM 1103 A 1 HETATM 15 C C15 0WM . . . D 3 61.232 -2.453 1.612 1 184.18 ? C15 0WM 1103 A 1 HETATM 16 C C16 0WM . . . D 3 60.132 -0.304 1.714 1 189.83 ? C16 0WM 1103 A 1 HETATM 17 C C17 0WM . . . D 3 61.28 -1.07 1.548 1 182.92 ? C17 0WM 1103 A 1 HETATM 18 F F18 0WM . . . D 3 60.018 -4.438 1.894 1 195.22 ? F18 0WM 1103 A 1 HETATM 19 CL CL1 0WM . . . D 3 57.39 -3.157 2.318 1 218.83 ? CL1 0WM 1103 A 1 HETATM 20 O O20 0WM . . . D 3 60.045 7.585 1.989 1 198.77 ? O20 0WM 1103 A 1 HETATM 21 C C21 0WM . . . D 3 59.018 8.587 1.993 1 209.77 ? C21 0WM 1103 A 1 HETATM 22 C C22 0WM . . . D 3 59.616 10.003 2.051 1 209.32 ? C22 0WM 1103 A 1 HETATM 23 O O23 0WM . . . D 3 59.457 10.537 3.371 1 216.21 ? O23 0WM 1103 A 1 HETATM 24 C C24 0WM . . . D 3 58.826 9.536 4.161 1 221.18 ? C24 0WM 1103 A 1 HETATM 25 C C25 0WM . . . D 3 58.131 8.584 3.212 1 219.54 ? C25 0WM 1103 A 1 HETATM 26 N N26 0WM . . . D 3 62.208 6.053 2.014 1 181.66 ? N26 0WM 1103 A 1 HETATM 27 C C27 0WM . . . D 3 63.512 5.566 2.038 1 177.04 ? C27 0WM 1103 A 1 HETATM 28 C C28 0WM . . . D 3 64.589 6.573 2.273 1 173.13 ? C28 0WM 1103 A 1 HETATM 29 O O29 0WM . . . D 3 63.763 4.386 1.908 1 170.01 ? O29 0WM 1103 A 1 HETATM 30 C C30 0WM . . . D 3 65.877 6.228 2.467 1 173.14 ? C30 0WM 1103 A 1 HETATM 31 C C31 0WM . . . D 3 66.893 7.343 2.738 1 172.59 ? C31 0WM 1103 A 1 HETATM 32 N N32 0WM . . . D 3 68.28 7.173 2.221 1 167.53 ? N32 0WM 1103 A 1 HETATM 33 C C33 0WM . . . D 3 68.471 6.074 1.226 1 161.54 ? C33 0WM 1103 A 1 HETATM 34 C C34 0WM . . . D 3 68.809 8.455 1.675 1 165.54 ? C34 0WM 1103 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #