data_4G5O # _model_server_result.job_id G8faOnJfxiAxRah0AVUQxQ _model_server_result.datetime_utc '2024-11-22 12:51:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":402}' # _entry.id 4G5O # _exptl.entry_id 4G5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G5O _cell.length_a 207.326 _cell.length_b 207.326 _cell.length_c 236.545 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,M,N,O,HA 1 1 B,F,P,Q,R,S,T,IA,LA 2 1 C,G,U,V,W,X,Y,Z,JA,MA 3 1 D,H,AA,BA,CA,DA,EA,FA,GA,KA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 V N N ? 4 BA N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4G5O _atom_sites.fract_transf_matrix[1][1] 0.004823 _atom_sites.fract_transf_matrix[1][2] 0.002785 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GDP A 1 401 1 GDP GDP . J 4 CIT A 1 402 2 CIT CIT . K 4 CIT A 1 403 4 CIT CIT . L 5 SO4 A 1 404 3 SO4 SO4 . M 5 SO4 A 1 405 5 SO4 SO4 . N 5 SO4 A 1 406 7 SO4 SO4 . O 5 SO4 A 1 407 16 SO4 SO4 . P 3 GDP B 1 401 2 GDP GDP . Q 5 SO4 B 1 402 1 SO4 SO4 . R 5 SO4 B 1 403 4 SO4 SO4 . S 5 SO4 B 1 404 8 SO4 SO4 . T 5 SO4 B 1 405 18 SO4 SO4 . U 3 GDP C 1 401 3 GDP GDP . V 4 CIT C 1 402 1 CIT CIT . W 5 SO4 C 1 403 2 SO4 SO4 . X 5 SO4 C 1 404 6 SO4 SO4 . Y 5 SO4 C 1 405 11 SO4 SO4 . Z 5 SO4 C 1 406 13 SO4 SO4 . AA 3 GDP D 1 401 4 GDP GDP . BA 4 CIT D 1 402 3 CIT CIT . CA 5 SO4 D 1 403 9 SO4 SO4 . DA 5 SO4 D 1 404 10 SO4 SO4 . EA 5 SO4 D 1 405 15 SO4 SO4 . FA 5 SO4 D 1 406 17 SO4 SO4 . GA 5 SO4 D 1 407 19 SO4 SO4 . HA 6 HOH A 1 501 14 HOH HOH . HA 6 HOH A 2 502 37 HOH HOH . IA 6 HOH B 1 501 11 HOH HOH . JA 6 HOH C 1 501 2 HOH HOH . JA 6 HOH C 2 502 8 HOH HOH . JA 6 HOH C 3 503 25 HOH HOH . JA 6 HOH C 4 504 34 HOH HOH . KA 6 HOH D 1 501 5 HOH HOH . KA 6 HOH D 2 502 7 HOH HOH . KA 6 HOH D 3 503 12 HOH HOH . LA 6 HOH F 1 701 10 HOH HOH . MA 6 HOH G 1 701 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . V 4 51.515 -77.455 -4.313 1 56.09 ? C1 CIT 402 C 1 HETATM 2 O O1 CIT . . . V 4 52.647 -77.786 -3.899 1 60.92 ? O1 CIT 402 C 1 HETATM 3 O O2 CIT . . . V 4 50.877 -76.507 -3.839 1 59.67 ? O2 CIT 402 C 1 HETATM 4 C C2 CIT . . . V 4 50.856 -78.247 -5.408 1 52.44 ? C2 CIT 402 C 1 HETATM 5 C C3 CIT . . . V 4 51.612 -78.165 -6.7 1 47.51 ? C3 CIT 402 C 1 HETATM 6 O O7 CIT . . . V 4 52.946 -77.742 -6.872 1 47.89 ? O7 CIT 402 C 1 HETATM 7 C C4 CIT . . . V 4 50.839 -78.296 -7.996 1 49.91 ? C4 CIT 402 C 1 HETATM 8 C C5 CIT . . . V 4 51.281 -79.341 -9.023 1 48.09 ? C5 CIT 402 C 1 HETATM 9 O O3 CIT . . . V 4 51.601 -78.95 -10.162 1 47.48 ? O3 CIT 402 C 1 HETATM 10 O O4 CIT . . . V 4 51.272 -80.562 -8.754 1 47.48 ? O4 CIT 402 C 1 HETATM 11 C C6 CIT . . . V 4 52.123 -79.592 -6.348 1 48.89 ? C6 CIT 402 C 1 HETATM 12 O O5 CIT . . . V 4 51.403 -80.47 -5.8 1 45.53 ? O5 CIT 402 C 1 HETATM 13 O O6 CIT . . . V 4 53.32 -79.906 -6.544 1 49.44 ? O6 CIT 402 C 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #