data_4G5P # _model_server_result.job_id 8ASVYG8IGhbEo2P1OGr1Ew _model_server_result.datetime_utc '2024-12-22 06:08:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 4G5P # _exptl.entry_id 4G5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 487.954 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(3-chloro-4-fluorophenyl)amino]-7-[(3S)-tetrahydrofuran-3-yloxy]quinazolin-6-yl}-4-(dimethylamino)butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4G5P _cell.length_a 51.23 _cell.length_b 89.43 _cell.length_c 164.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 A,B,C,D,E 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 105 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id 0WN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 0WN _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.828 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H27 Cl F N5 O3' _chem_comp.formula_weight 487.954 _chem_comp.id 0WN _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(3-chloro-4-fluorophenyl)amino]-7-[(3S)-tetrahydrofuran-3-yloxy]quinazolin-6-yl}-4-(dimethylamino)butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Afatinib, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F18 C13 0WN sing 1 n n C13 C15 0WN doub 2 n y C13 C12 0WN sing 3 n y CL1 C12 0WN sing 4 n n C15 C17 0WN sing 5 n y C12 C14 0WN doub 6 n y C17 C16 0WN doub 7 n y C14 C16 0WN sing 8 n y C16 N11 0WN sing 9 n n N11 C4 0WN sing 10 n n N2 C4 0WN doub 11 n y N2 C1 0WN sing 12 n y C4 C6 0WN sing 13 n y C1 N3 0WN doub 14 n y C6 C8 0WN doub 15 n y C6 C5 0WN sing 16 n y C33 N32 0WN sing 17 n n C8 C7 0WN sing 18 n y N3 C5 0WN sing 19 n y C5 C10 0WN doub 20 n y O29 C27 0WN doub 21 n n N32 C34 0WN sing 22 n n N32 C31 0WN sing 23 n n C7 N26 0WN sing 24 n n C7 C9 0WN doub 25 n y C10 C9 0WN sing 26 n y C27 N26 0WN sing 27 n n C27 C28 0WN sing 28 n n C9 O20 0WN sing 29 n n C31 C30 0WN sing 30 n n C30 C28 0WN sing 31 n n O20 C21 0WN sing 32 n n C22 C21 0WN sing 33 n n C22 O23 0WN sing 34 n n C21 C25 0WN sing 35 n n O23 C24 0WN sing 36 n n C25 C24 0WN sing 37 n n C1 H1 0WN sing 38 n n C8 H2 0WN sing 39 n n C10 H3 0WN sing 40 n n N11 H4 0WN sing 41 n n C14 H5 0WN sing 42 n n C15 H6 0WN sing 43 n n C17 H7 0WN sing 44 n n C21 H8 0WN sing 45 n n C22 H9 0WN sing 46 n n C22 H10 0WN sing 47 n n C24 H11 0WN sing 48 n n C24 H12 0WN sing 49 n n C25 H13 0WN sing 50 n n C25 H14 0WN sing 51 n n N26 H15 0WN sing 52 n n C28 H16 0WN sing 53 n n C28 H17 0WN sing 54 n n C30 H18 0WN sing 55 n n C30 H19 0WN sing 56 n n C31 H20 0WN sing 57 n n C31 H21 0WN sing 58 n n C33 H23 0WN sing 59 n n C33 H24 0WN sing 60 n n C33 H25 0WN sing 61 n n C34 H26 0WN sing 62 n n C34 H27 0WN sing 63 n n C34 H28 0WN sing 64 n n # _atom_sites.entry_id 4G5P _atom_sites.fract_transf_matrix[1][1] 0.01952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0WN A 1 1101 1 0WN 0WN . D 3 HOH A 1 1201 2 HOH HOH . D 3 HOH A 2 1202 3 HOH HOH . D 3 HOH A 3 1203 4 HOH HOH . D 3 HOH A 4 1204 5 HOH HOH . D 3 HOH A 5 1205 6 HOH HOH . D 3 HOH A 6 1206 7 HOH HOH . D 3 HOH A 7 1207 8 HOH HOH . D 3 HOH A 8 1208 9 HOH HOH . D 3 HOH A 9 1209 10 HOH HOH . D 3 HOH A 10 1210 11 HOH HOH . D 3 HOH A 11 1211 12 HOH HOH . D 3 HOH A 12 1212 28 HOH HOH . D 3 HOH A 13 1213 37 HOH HOH . D 3 HOH A 14 1214 1 HOH HOH . E 3 HOH B 1 1101 13 HOH HOH . E 3 HOH B 2 1102 14 HOH HOH . E 3 HOH B 3 1103 15 HOH HOH . E 3 HOH B 4 1104 16 HOH HOH . E 3 HOH B 5 1105 17 HOH HOH . E 3 HOH B 6 1106 18 HOH HOH . E 3 HOH B 7 1107 19 HOH HOH . E 3 HOH B 8 1108 20 HOH HOH . E 3 HOH B 9 1109 21 HOH HOH . E 3 HOH B 10 1110 22 HOH HOH . E 3 HOH B 11 1111 23 HOH HOH . E 3 HOH B 12 1112 24 HOH HOH . E 3 HOH B 13 1113 25 HOH HOH . E 3 HOH B 14 1114 26 HOH HOH . E 3 HOH B 15 1115 27 HOH HOH . E 3 HOH B 16 1116 29 HOH HOH . E 3 HOH B 17 1117 30 HOH HOH . E 3 HOH B 18 1118 31 HOH HOH . E 3 HOH B 19 1119 32 HOH HOH . E 3 HOH B 20 1120 33 HOH HOH . E 3 HOH B 21 1121 34 HOH HOH . E 3 HOH B 22 1122 35 HOH HOH . E 3 HOH B 23 1123 36 HOH HOH . E 3 HOH B 24 1124 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0WN . . . C 2 -7.041 19.709 30.157 1 60.16 ? C1 0WN 1101 A 1 HETATM 2 N N2 0WN . . . C 2 -8.107 20.561 29.996 1 59.59 ? N2 0WN 1101 A 1 HETATM 3 N N3 0WN . . . C 2 -7.19 18.596 30.951 1 60.52 ? N3 0WN 1101 A 1 HETATM 4 C C4 0WN . . . C 2 -9.326 20.335 30.613 1 60.32 ? C4 0WN 1101 A 1 HETATM 5 C C5 0WN . . . C 2 -8.395 18.353 31.581 1 60.05 ? C5 0WN 1101 A 1 HETATM 6 C C6 0WN . . . C 2 -9.492 19.203 31.432 1 59.85 ? C6 0WN 1101 A 1 HETATM 7 C C7 0WN . . . C 2 -10.777 17.729 32.897 1 59.9 ? C7 0WN 1101 A 1 HETATM 8 C C8 0WN . . . C 2 -10.684 18.878 32.105 1 59.37 ? C8 0WN 1101 A 1 HETATM 9 C C9 0WN . . . C 2 -9.652 16.905 33.022 1 59.61 ? C9 0WN 1101 A 1 HETATM 10 C C10 0WN . . . C 2 -8.476 17.229 32.367 1 59.81 ? C10 0WN 1101 A 1 HETATM 11 N N11 0WN . . . C 2 -10.381 21.241 30.319 1 61.18 ? N11 0WN 1101 A 1 HETATM 12 C C12 0WN . . . C 2 -9.497 23.277 27.26 1 63.87 ? C12 0WN 1101 A 1 HETATM 13 C C13 0WN . . . C 2 -10.618 24.101 27.233 1 63.36 ? C13 0WN 1101 A 1 HETATM 14 C C14 0WN . . . C 2 -9.395 22.311 28.256 1 63.45 ? C14 0WN 1101 A 1 HETATM 15 C C15 0WN . . . C 2 -11.62 23.962 28.183 1 63.04 ? C15 0WN 1101 A 1 HETATM 16 C C16 0WN . . . C 2 -10.396 22.168 29.23 1 61.59 ? C16 0WN 1101 A 1 HETATM 17 C C17 0WN . . . C 2 -11.51 22.999 29.169 1 62.44 ? C17 0WN 1101 A 1 HETATM 18 F F18 0WN . . . C 2 -10.742 25.035 26.3 1 63.66 ? F18 0WN 1101 A 1 HETATM 19 CL CL1 0WN . . . C 2 -8.245 23.449 26.066 1 62.16 ? CL1 0WN 1101 A 1 HETATM 20 O O20 0WN . . . C 2 -9.704 15.777 33.796 1 59.76 ? O20 0WN 1101 A 1 HETATM 21 C C21 0WN . . . C 2 -9.079 14.526 33.498 1 55.52 ? C21 0WN 1101 A 1 HETATM 22 C C22 0WN . . . C 2 -9.355 14.029 32.075 1 54.45 ? C22 0WN 1101 A 1 HETATM 23 O O23 0WN . . . C 2 -9.433 12.608 32.123 1 54.16 ? O23 0WN 1101 A 1 HETATM 24 C C24 0WN . . . C 2 -10.032 12.322 33.381 1 54.77 ? C24 0WN 1101 A 1 HETATM 25 C C25 0WN . . . C 2 -9.622 13.411 34.356 1 54.56 ? C25 0WN 1101 A 1 HETATM 26 N N26 0WN . . . C 2 -11.964 17.359 33.626 1 61.22 ? N26 0WN 1101 A 1 HETATM 27 C C27 0WN . . . C 2 -13.351 17.428 33.408 1 60.55 ? C27 0WN 1101 A 1 HETATM 28 C C28 0WN . . . C 2 -14.247 16.928 34.516 1 59.02 ? C28 0WN 1101 A 1 HETATM 29 O O29 0WN . . . C 2 -13.82 17.856 32.373 1 60.65 ? O29 0WN 1101 A 1 HETATM 30 C C30 0WN . . . C 2 -14.961 18.083 35.296 1 58.66 ? C30 0WN 1101 A 1 HETATM 31 C C31 0WN . . . C 2 -16.513 18.016 35.315 1 61.59 ? C31 0WN 1101 A 1 HETATM 32 N N32 0WN . . . C 2 -17.161 19.027 34.431 1 64.06 ? N32 0WN 1101 A 1 HETATM 33 C C33 0WN . . . C 2 -17.307 18.539 33.039 1 62.66 ? C33 0WN 1101 A 1 HETATM 34 C C34 0WN . . . C 2 -18.494 19.458 34.915 1 64.28 ? C34 0WN 1101 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #