data_4G5Q # _model_server_result.job_id XuAC5EOHlK89cvag6AUA6w _model_server_result.datetime_utc '2024-11-29 03:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4g5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":402}' # _entry.id 4G5Q # _exptl.entry_id 4G5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4G5Q _cell.length_a 207.376 _cell.length_b 207.376 _cell.length_c 236.661 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4G5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,M,HA,LA 1 1 B,F,N,O,P,Q,R,S,T,IA,MA 2 1 C,G,U,V,W,X,Y,Z,JA,NA 3 1 D,H,AA,BA,CA,DA,EA,FA,GA,KA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 V N N ? 5 BA N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4G5Q _atom_sites.fract_transf_matrix[1][1] 0.004822 _atom_sites.fract_transf_matrix[1][2] 0.002784 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GDP A 1 401 1 GDP GDP . J 4 SO4 A 1 402 3 SO4 SO4 . K 4 SO4 A 1 403 5 SO4 SO4 . L 4 SO4 A 1 404 7 SO4 SO4 . M 4 SO4 A 1 405 16 SO4 SO4 . N 3 GDP B 1 401 1 GDP GDP . O 5 CIT B 1 402 1 CIT CIT . P 5 CIT B 1 403 1 CIT CIT . Q 4 SO4 B 1 404 1 SO4 SO4 . R 4 SO4 B 1 405 4 SO4 SO4 . S 4 SO4 B 1 406 8 SO4 SO4 . T 4 SO4 B 1 407 18 SO4 SO4 . U 3 GDP C 1 401 1 GDP GDP . V 5 CIT C 1 402 1 CIT CIT . W 4 SO4 C 1 403 2 SO4 SO4 . X 4 SO4 C 1 404 6 SO4 SO4 . Y 4 SO4 C 1 405 11 SO4 SO4 . Z 4 SO4 C 1 406 13 SO4 SO4 . AA 3 GDP D 1 401 1 GDP GDP . BA 5 CIT D 1 402 1 CIT CIT . CA 4 SO4 D 1 403 9 SO4 SO4 . DA 4 SO4 D 1 404 10 SO4 SO4 . EA 4 SO4 D 1 405 15 SO4 SO4 . FA 4 SO4 D 1 406 17 SO4 SO4 . GA 4 SO4 D 1 407 19 SO4 SO4 . HA 6 HOH A 1 501 1 HOH HOH . HA 6 HOH A 2 502 14 HOH HOH . HA 6 HOH A 3 503 15 HOH HOH . HA 6 HOH A 4 504 22 HOH HOH . HA 6 HOH A 5 505 31 HOH HOH . HA 6 HOH A 6 506 32 HOH HOH . HA 6 HOH A 7 507 35 HOH HOH . IA 6 HOH B 1 501 4 HOH HOH . IA 6 HOH B 2 502 9 HOH HOH . IA 6 HOH B 3 503 11 HOH HOH . IA 6 HOH B 4 504 13 HOH HOH . IA 6 HOH B 5 505 24 HOH HOH . IA 6 HOH B 6 506 26 HOH HOH . IA 6 HOH B 7 507 27 HOH HOH . IA 6 HOH B 8 508 33 HOH HOH . JA 6 HOH C 1 501 2 HOH HOH . JA 6 HOH C 2 502 17 HOH HOH . JA 6 HOH C 3 503 21 HOH HOH . JA 6 HOH C 4 504 23 HOH HOH . JA 6 HOH C 5 505 25 HOH HOH . JA 6 HOH C 6 506 28 HOH HOH . JA 6 HOH C 7 507 29 HOH HOH . JA 6 HOH C 8 508 30 HOH HOH . JA 6 HOH C 9 509 34 HOH HOH . KA 6 HOH D 1 501 5 HOH HOH . KA 6 HOH D 2 502 6 HOH HOH . KA 6 HOH D 3 503 7 HOH HOH . KA 6 HOH D 4 504 12 HOH HOH . KA 6 HOH D 5 505 19 HOH HOH . KA 6 HOH D 6 506 20 HOH HOH . KA 6 HOH D 7 507 36 HOH HOH . LA 6 HOH E 1 701 18 HOH HOH . MA 6 HOH F 1 701 10 HOH HOH . NA 6 HOH G 1 701 3 HOH HOH . NA 6 HOH G 2 702 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . V 5 59.324 -91.041 -10.684 1 63.31 ? C1 CIT 402 C 1 HETATM 2 O O1 CIT . . . V 5 59.308 -91.02 -9.453 1 76.03 ? O1 CIT 402 C 1 HETATM 3 O O2 CIT . . . V 5 58.417 -90.515 -11.365 1 66.31 ? O2 CIT 402 C 1 HETATM 4 C C2 CIT . . . V 5 60.503 -91.749 -11.287 1 64.21 ? C2 CIT 402 C 1 HETATM 5 C C3 CIT . . . V 5 60.315 -92.036 -12.764 1 60.06 ? C3 CIT 402 C 1 HETATM 6 O O7 CIT . . . V 5 60.849 -93.17 -13.444 1 72.47 ? O7 CIT 402 C 1 HETATM 7 C C4 CIT . . . V 5 59.361 -91.028 -13.501 1 53.95 ? C4 CIT 402 C 1 HETATM 8 C C5 CIT . . . V 5 59.805 -89.581 -13.664 1 55.63 ? C5 CIT 402 C 1 HETATM 9 O O3 CIT . . . V 5 59.974 -88.865 -12.657 1 54.62 ? O3 CIT 402 C 1 HETATM 10 O O4 CIT . . . V 5 59.928 -89.105 -14.814 1 55.5 ? O4 CIT 402 C 1 HETATM 11 C C6 CIT . . . V 5 59.363 -93.134 -12.289 1 63.26 ? C6 CIT 402 C 1 HETATM 12 O O5 CIT . . . V 5 59.776 -94.169 -11.614 1 47.38 ? O5 CIT 402 C 1 HETATM 13 O O6 CIT . . . V 5 58.174 -92.963 -12.639 1 72.89 ? O6 CIT 402 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #